* Package: dev-python/tables-3.9.2:0 * Repository: gentoo * Maintainer: python@gentoo.org sci@gentoo.org * USE: abi_x86_64 amd64 cpudetection elibc_glibc examples kernel_linux python_targets_python3_11 * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking tables-3.9.2.tar.gz to /var/tmp/portage/dev-python/tables-3.9.2/work >>> Source unpacked in /var/tmp/portage/dev-python/tables-3.9.2/work >>> Preparing source in /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2 ... * Build system packages: * dev-python/gpep517 : 15 * dev-python/installer : 0.7.0 * dev-python/cython : 0.29.37.1 * dev-python/setuptools : 69.0.3 * dev-python/setuptools-rust : 1.8.1 * dev-python/setuptools-scm : 8.0.4 * dev-python/wheel : 0.42.0 >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2 ... * python3_11: running distutils-r1_run_phase distutils-r1_python_compile * Building the wheel for tables-3.9.2 via setuptools.build_meta python3.11 -m gpep517 build-wheel --prefix=/usr --backend setuptools.build_meta --output-fd 3 --wheel-dir /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/wheel 2024-01-24 23:51:39,420 gpep517 INFO Building wheel via backend setuptools.build_meta [01/24/24 23:51:41] WARNING pyproject.toml does not contain a setuptools.py:119 tool.setuptools_scm section * Using Python 3.11.7 (main, Jan 18 2024, 06:21:42) [GCC 13.2.1 20240113] * Found cython 0.29.37 * USE_PKGCONFIG: True * Found HDF5 headers at ``/usr/include``, library at ``/usr/lib64``. * Found LZO 2 headers at ``/usr/include``, library at ``/usr/lib64``. .. WARNING:: Could not find the LZO 2 runtime. The LZO 2 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. * Skipping detection of LZO 1 since LZO 2 has already been found. * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``. .. WARNING:: Could not find the bzip2 runtime. The bzip2 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. * Found blosc headers at ``/usr/include``, library at ``/usr/lib64``. * Run 'blosc2_find_directories_hook' * Unable to find blosc2 wheel. * Found blosc2 headers at ``/usr/include``, library at ``/usr/lib64``. [1/1] Cythonizing tables/utilsextension.pyx [1/1] Cythonizing tables/hdf5extension.pyx [1/1] Cythonizing tables/tableextension.pyx [1/1] Cythonizing tables/linkextension.pyx [1/1] Cythonizing tables/_comp_lzo.pyx [1/1] Cythonizing tables/_comp_bzip2.pyx [1/1] Cythonizing tables/lrucacheextension.pyx [1/1] Cythonizing tables/indexesextension.pyx [01/24/24 23:51:48] WARNING pyproject.toml does not contain a setuptools.py:119 tool.setuptools_scm section 2024-01-24 23:51:49,895 setuptools.config._apply_pyprojecttoml WARNING ModuleNotFoundError while trying to load entry-point lint: No module named 'tasks' 2024-01-24 23:51:49,895 setuptools.config._apply_pyprojecttoml WARNING ModuleNotFoundError while trying to load entry-point test: No module named 'tasks' 2024-01-24 23:51:49,989 root INFO running bdist_wheel 2024-01-24 23:51:50,458 root INFO running build 2024-01-24 23:51:50,527 root INFO running build_py 2024-01-24 23:51:50,593 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build 2024-01-24 23:51:50,593 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311 2024-01-24 23:51:50,593 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,593 root INFO copying tables/__init__.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,594 root INFO copying tables/_version.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,594 root INFO copying tables/array.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,594 root INFO copying tables/atom.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,594 root INFO copying tables/attributeset.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,595 root INFO copying tables/carray.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,595 root INFO copying tables/conditions.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,595 root INFO copying tables/description.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,595 root INFO copying tables/earray.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,596 root INFO copying tables/exceptions.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,596 root INFO copying tables/expression.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,596 root INFO copying tables/file.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,597 root INFO copying tables/filters.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,597 root INFO copying tables/flavor.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,597 root INFO copying tables/group.py -> 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23:51:50,599 root INFO copying tables/node.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,599 root INFO copying tables/parameters.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,599 root INFO copying tables/path.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,600 root INFO copying tables/registry.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,600 root INFO copying tables/req_versions.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,600 root INFO copying tables/table.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,601 root INFO copying tables/undoredo.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,601 root INFO copying tables/unimplemented.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,601 root INFO copying tables/utils.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,602 root INFO copying tables/vlarray.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:50,602 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/misc 2024-01-24 23:51:50,602 root INFO copying tables/misc/__init__.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/misc 2024-01-24 23:51:50,602 root INFO copying tables/misc/enum.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/misc 2024-01-24 23:51:50,603 root INFO copying tables/misc/proxydict.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/misc 2024-01-24 23:51:50,603 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/nodes 2024-01-24 23:51:50,603 root INFO copying tables/nodes/__init__.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/nodes 2024-01-24 23:51:50,603 root INFO copying tables/nodes/filenode.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/nodes 2024-01-24 23:51:50,604 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/scripts 2024-01-24 23:51:50,604 root INFO copying tables/scripts/__init__.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/scripts 2024-01-24 23:51:50,604 root INFO copying tables/scripts/pt2to3.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/scripts 2024-01-24 23:51:50,604 root INFO copying tables/scripts/ptdump.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/scripts 2024-01-24 23:51:50,605 root INFO copying tables/scripts/ptrepack.py -> 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/var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:50,615 root INFO copying tables/tests/test_tables.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:50,616 root INFO copying tables/tests/test_tablesMD.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:50,616 root INFO copying tables/tests/test_timestamps.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:50,617 root INFO copying tables/tests/test_timetype.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:50,617 root INFO copying tables/tests/test_tree.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:50,617 root INFO copying tables/tests/test_types.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:50,618 root INFO copying tables/tests/test_utils.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:50,618 root INFO copying tables/tests/test_vlarray.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:50,619 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/nodes/tests 2024-01-24 23:51:50,619 root INFO copying tables/nodes/tests/__init__.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/nodes/tests 2024-01-24 23:51:50,619 root INFO copying tables/nodes/tests/test_filenode.py -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/nodes/tests 2024-01-24 23:51:50,620 root INFO running egg_info 2024-01-24 23:51:50,692 root INFO writing tables.egg-info/PKG-INFO 2024-01-24 23:51:50,694 root INFO writing dependency_links to tables.egg-info/dependency_links.txt 2024-01-24 23:51:50,694 root INFO writing entry points to tables.egg-info/entry_points.txt 2024-01-24 23:51:50,694 root INFO writing requirements to tables.egg-info/requires.txt 2024-01-24 23:51:50,695 root INFO writing top-level names to tables.egg-info/top_level.txt [01/24/24 23:51:50] ERROR listing git files failed - pretending git.py:24 there aren't any 2024-01-24 23:51:51,155 root INFO reading manifest file 'tables.egg-info/SOURCES.txt' 2024-01-24 23:51:51,161 root INFO reading manifest template 'MANIFEST.in' 2024-01-24 23:51:51,210 root WARNING warning: no previously-included files matching '*.c' found under directory 'tables' 2024-01-24 23:51:51,229 root WARNING warning: no files found matching '*.c' under directory 'c-blosc/blosc' 2024-01-24 23:51:51,230 root WARNING warning: no files found matching '*.h' under directory 'c-blosc/blosc' 2024-01-24 23:51:51,230 root WARNING warning: no files found matching '*.inc' under directory 'c-blosc/blosc' 2024-01-24 23:51:51,230 root WARNING warning: no files found matching '*.c' under directory 'c-blosc/internal-complibs' 2024-01-24 23:51:51,230 root WARNING warning: no files found matching '*.cc' under directory 'c-blosc/internal-complibs' 2024-01-24 23:51:51,230 root WARNING warning: no files found matching '*.h' under directory 'c-blosc/internal-complibs' 2024-01-24 23:51:51,254 root WARNING warning: no files found matching '*.conf' under directory 'doc' 2024-01-24 23:51:51,282 root WARNING warning: no files found matching '*.*_t' under directory 'doc' 2024-01-24 23:51:51,312 root WARNING warning: no files found matching '*.js' under directory 'doc' 2024-01-24 23:51:51,326 root WARNING warning: no files found matching '*.css' under directory 'doc' 2024-01-24 23:51:51,381 root WARNING warning: no files found matching '*' under directory 'doc/sphinxext' 2024-01-24 23:51:51,381 root WARNING warning: no previously-included files matching '*' found under directory 'doc/build' 2024-01-24 23:51:51,412 root WARNING warning: no files found matching '*.h5' under directory 'bench' 2024-01-24 23:51:51,418 root INFO adding license file 'LICENSE.txt' 2024-01-24 23:51:51,423 root INFO writing manifest file 'tables.egg-info/SOURCES.txt' 2024-01-24 23:51:51,428 root INFO copying tables/_comp_bzip2.pyx -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,428 root INFO copying tables/_comp_lzo.pyx -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,429 root INFO copying tables/definitions.pxd -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,429 root INFO copying tables/hdf5extension.pxd -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,429 root INFO copying tables/hdf5extension.pyx -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,430 root INFO copying tables/indexesextension.pyx -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,430 root INFO copying tables/linkextension.pyx -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,431 root INFO copying tables/lrucacheextension.pxd -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,431 root INFO copying tables/lrucacheextension.pyx -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,432 root INFO copying tables/tableextension.pyx -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,432 root INFO copying tables/utilsextension.pxd -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,433 root INFO copying tables/utilsextension.pyx -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,433 root INFO copying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,433 root INFO copying tables/tests/Tables_lzo1.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,434 root INFO copying tables/tests/Tables_lzo1_shuffle.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,434 root INFO copying tables/tests/Tables_lzo2.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,435 root INFO copying tables/tests/Tables_lzo2_shuffle.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,435 root INFO copying tables/tests/array_mdatom.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,436 root INFO copying tables/tests/attr-u16.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,436 root INFO copying tables/tests/b2nd-no-chunkshape.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,436 root INFO copying tables/tests/blosc_bigendian.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,437 root INFO copying tables/tests/bug-idx.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,437 root INFO copying tables/tests/elink.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,437 root INFO copying tables/tests/elink2.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,438 root INFO copying tables/tests/ex-noattr.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,438 root INFO copying tables/tests/flavored_vlarrays-format1.6.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,439 root INFO copying tables/tests/float.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,439 root INFO copying tables/tests/idx-std-1.x.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,439 root INFO copying tables/tests/indexes_2_0.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,440 root INFO copying tables/tests/indexes_2_1.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,440 root INFO copying tables/tests/issue_368.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,441 root INFO copying tables/tests/issue_560.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,441 root INFO copying tables/tests/itemsize.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,442 root INFO copying tables/tests/matlab_file.mat -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,442 root INFO copying tables/tests/nested-type-with-gaps.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,442 root INFO copying tables/tests/non-chunked-table.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,443 root INFO copying tables/tests/oldflavor_numeric.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,443 root INFO copying tables/tests/out_of_order_types.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,444 root INFO copying tables/tests/python2.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,445 root INFO copying tables/tests/python3.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,445 root INFO copying tables/tests/scalar.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,446 root INFO copying tables/tests/slink.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,446 root INFO copying tables/tests/smpl_SDSextendible.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,446 root INFO copying tables/tests/smpl_compound_chunked.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,447 root INFO copying tables/tests/smpl_enum.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,447 root INFO copying tables/tests/smpl_f64be.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,448 root INFO copying tables/tests/smpl_f64le.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,449 root INFO copying tables/tests/smpl_i32be.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,450 root INFO copying tables/tests/smpl_i32le.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,450 root INFO copying tables/tests/smpl_i64be.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,451 root INFO copying tables/tests/smpl_i64le.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,451 root INFO copying tables/tests/smpl_unsupptype.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,452 root INFO copying tables/tests/test_ref_array1.mat -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,452 root INFO copying tables/tests/test_ref_array2.mat -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,452 root INFO copying tables/tests/test_szip.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,453 root INFO copying tables/tests/time-table-vlarray-1_x.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,453 root INFO copying tables/tests/times-nested-be.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,454 root INFO copying tables/tests/vlstr_attr.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,454 root INFO copying tables/tests/vlunicode_endian.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,455 root INFO copying tables/tests/zerodim-attrs-1.3.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,455 root INFO copying tables/tests/zerodim-attrs-1.4.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/tests 2024-01-24 23:51:51,456 root INFO copying tables/nodes/tests/test_filenode.dat -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/nodes/tests 2024-01-24 23:51:51,456 root INFO copying tables/nodes/tests/test_filenode.xbm -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/nodes/tests 2024-01-24 23:51:51,457 root INFO copying tables/nodes/tests/test_filenode_v1.h5 -> /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/nodes/tests 2024-01-24 23:51:51,459 root WARNING warning: build_py: byte-compiling is disabled, skipping. 2024-01-24 23:51:51,459 root INFO running build_ext 2024-01-24 23:51:51,615 root INFO building 'tables.utilsextension' extension 2024-01-24 23:51:51,616 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311 2024-01-24 23:51:51,616 root INFO building 'tables.hdf5extension' extension 2024-01-24 23:51:51,616 root INFO building 'tables.tableextension' extension 2024-01-24 23:51:51,616 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc 2024-01-24 23:51:51,617 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc 2024-01-24 23:51:51,617 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc/src 2024-01-24 23:51:51,617 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc/src 2024-01-24 23:51:51,617 root INFO building 'tables._comp_lzo' extension 2024-01-24 23:51:51,618 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/src 2024-01-24 23:51:51,619 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc2 2024-01-24 23:51:51,619 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/tables 2024-01-24 23:51:51,619 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc2 2024-01-24 23:51:51,619 root INFO creating /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc2/src 2024-01-24 23:51:51,619 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c src/H5Zlzo.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/src/H5Zlzo.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:51,620 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:51,620 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:51,620 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:51,823 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c tables/_comp_lzo.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/tables/_comp_lzo.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:51,838 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c hdf5-blosc2/src/blosc2_filter.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc2/src/blosc2_filter.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:51,847 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c hdf5-blosc2/src/blosc2_filter.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc2/src/blosc2_filter.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:51,847 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c hdf5-blosc2/src/blosc2_filter.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc2/src/blosc2_filter.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:52,530 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/src/H5Zlzo.o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/tables/_comp_lzo.o -L/usr/lib64 -lhdf5 -llzo2 -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/_comp_lzo.cpython-311-x86_64-linux-gnu.so 2024-01-24 23:51:52,576 root INFO building 'tables._comp_bzip2' extension 2024-01-24 23:51:52,576 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c src/H5Zbzip2.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/src/H5Zbzip2.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION In file included from hdf5-blosc2/src/blosc2_filter.c:18: /usr/include/b2nd.h:30:10: fatal error: blosc-private.h: No such file or directory 30 | #include "blosc-private.h" | ^~~~~~~~~~~~~~~~~ compilation terminated. In file included from hdf5-blosc2/src/blosc2_filter.c:18: /usr/include/b2nd.h:30:10: fatal error: blosc-private.h: No such file or directory 30 | #include "blosc-private.h" | ^~~~~~~~~~~~~~~~~ compilation terminated. 2024-01-24 23:51:52,636 root INFO building 'tables.linkextension' extension 2024-01-24 23:51:52,636 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c tables/linkextension.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/tables/linkextension.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:52,638 root INFO building 'tables.lrucacheextension' extension 2024-01-24 23:51:52,643 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c tables/lrucacheextension.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/tables/lrucacheextension.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION In file included from hdf5-blosc2/src/blosc2_filter.c:18: /usr/include/b2nd.h:30:10: fatal error: blosc-private.h: No such file or directory 30 | #include "blosc-private.h" | ^~~~~~~~~~~~~~~~~ compilation terminated. 2024-01-24 23:51:52,677 root INFO building 'tables.indexesextension' extension 2024-01-24 23:51:52,678 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:52,723 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c tables/_comp_bzip2.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/tables/_comp_bzip2.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:52,846 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/src -I/usr/lib/python3.11/site-packages/numpy/core/include -I/usr/include/python3.11 -c hdf5-blosc2/src/blosc2_filter.c -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/hdf5-blosc2/src/blosc2_filter.o -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -Isrc -DH5_USE_110_API -DH5Rdereference_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION 2024-01-24 23:51:53,394 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/src/H5Zbzip2.o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/tables/_comp_bzip2.o -L/usr/lib64 -lhdf5 -lbz2 -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/_comp_bzip2.cpython-311-x86_64-linux-gnu.so In file included from hdf5-blosc2/src/blosc2_filter.c:18: /usr/include/b2nd.h:30:10: fatal error: blosc-private.h: No such file or directory 30 | #include "blosc-private.h" | ^~~~~~~~~~~~~~~~~ compilation terminated. 2024-01-24 23:51:56,067 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/tables/linkextension.o -L/usr/lib64 -lhdf5 -lblosc -lblosc2 -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/linkextension.cpython-311-x86_64-linux-gnu.so 2024-01-24 23:51:57,804 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/temp.linux-x86_64-cpython-311/tables/lrucacheextension.o -L/usr/lib64 -o /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/lib.linux-x86_64-cpython-311/tables/lrucacheextension.cpython-311-x86_64-linux-gnu.so error: command '/usr/bin/x86_64-pc-linux-gnu-gcc' failed with exit code 1 * ERROR: dev-python/tables-3.9.2::gentoo failed (compile phase): * Wheel build failed * * Call stack: * ebuild.sh, line 136: Called src_compile * environment, line 4170: Called distutils-r1_src_compile * environment, line 1985: Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile' * environment, line 774: Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 3766: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 3226: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 3224: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 1245: Called distutils-r1_run_phase 'distutils-r1_python_compile' * environment, line 1967: Called distutils-r1_python_compile * environment, line 1782: Called distutils_pep517_install '/var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/install' * environment, line 2323: Called die * The specific snippet of code: * local wheel=$("${cmd[@]}" 3>&1 1>&2 || die "Wheel build failed"); * * If you need support, post the output of `emerge --info '=dev-python/tables-3.9.2::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-python/tables-3.9.2::gentoo'`. * The complete build log is located at '/var/log/portage/dev-python:tables-3.9.2:20240124-235134.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-python/tables-3.9.2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/tables-3.9.2/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2' * S: '/var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2'