| Summary: | sci-biology/paml-4.9j - treesub.c: error: passing argument 3 of printSeqs from incompatible pointer type [-Wincompatible-pointer-types] | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | Keywords: | PullRequest |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| See Also: | https://github.com/gentoo/gentoo/pull/36048 | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 870412 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tar.xz qlist-info.txt sci-biology:paml-4.9j:20231214-144044.log temp.tar.xz |
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Created attachment 879402 [details]
emerge-info.txt
Created attachment 879403 [details]
emerge-history.txt
Created attachment 879404 [details]
environment
Created attachment 879405 [details]
etc.portage.tar.xz
Created attachment 879406 [details]
qlist-info.txt
Created attachment 879407 [details]
sci-biology:paml-4.9j:20231214-144044.log
Created attachment 879408 [details]
temp.tar.xz
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8a73a8d755084a19bb9071502667bf7783f86baa commit 8a73a8d755084a19bb9071502667bf7783f86baa Author: NHOrus <jy6x2b32pie9@yahoo.com> AuthorDate: 2024-04-01 18:08:48 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2024-05-08 16:56:04 +0000 sci-biology/paml: add 4.10.7 Project source is now hosted on github. Closes: https://bugs.gentoo.org/831488 Closes: https://bugs.gentoo.org/919885 Signed-off-by: NHOrus <jy6x2b32pie9@yahoo.com> Closes: https://github.com/gentoo/gentoo/pull/36048 Signed-off-by: Sam James <sam@gentoo.org> sci-biology/paml/Manifest | 1 + sci-biology/paml/metadata.xml | 3 +++ sci-biology/paml/paml-4.10.7.ebuild | 37 +++++++++++++++++++++++++++++++++++++ 3 files changed, 41 insertions(+) |
too long lines were shrinked: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wno-unused-result -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 baseml.c tools.o paml.h -lm -o baseml x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wno-unused-result -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 basemlg.c tools.o paml.h -lm -o basemlg x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wno-unused-result -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 codeml.c tools.o paml.h -lm -o codeml x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wno-unused-result -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 evolver.c tools.o paml.h -lm -o evolver In file included from baseml.c:131: treesub.c: In function IdenticalSeqs: treesub.c:1310:33: error: passing argument 3 of printSeqs from incompatible pointer type [-Wincompatible-pointer-types] 1310 | printSeqs(ftmp, com.z, com.spname, com.ns, com.ls, com.npatt, com.fpatt, NULL, keep, 1); | ~~~^~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no_multilib_systemd-20231213-230004 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-14 * clang/llvm (if any): Python 3.11.6 The following VMs are available for generation-2: *) Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm php cli (if any): go version go1.21.5 linux/amd64 HEAD of ::gentoo commit 31d5d452f5bcee9fb8c11b4e584d032af10326d4 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Thu Dec 14 14:02:01 2023 +0000 2023-12-14 14:02:01 UTC emerge -qpvO sci-biology/paml [ebuild N ] sci-biology/paml-4.9j