| Summary: | sci-biology/bfast-0.7.0a - RGMatch.c: error: passing argument 1 of feof from incompatible pointer type [-Wincompatible-pointer-types] | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | Keywords: | PullRequest |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| See Also: | https://github.com/gentoo/gentoo/pull/41322 | ||
| Whiteboard: | ~arch only | ||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 870412 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt.xz environment etc.clang.tar.xz etc.portage.tar.xz logs.tar.xz qlist-info.txt.xz sci-biology:bfast-0.7.0a:20231205-064340.log temp.tar.xz |
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Created attachment 877301 [details]
emerge-info.txt
Created attachment 877302 [details]
emerge-history.txt.xz
Created attachment 877303 [details]
environment
Created attachment 877304 [details]
etc.clang.tar.xz
Created attachment 877305 [details]
etc.portage.tar.xz
Created attachment 877306 [details]
logs.tar.xz
Created attachment 877307 [details]
qlist-info.txt.xz
Created attachment 877308 [details]
sci-biology:bfast-0.7.0a:20231205-064340.log
Created attachment 877309 [details]
temp.tar.xz
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=50d985100206472488c09036e81b226b3757f279 commit 50d985100206472488c09036e81b226b3757f279 Author: NHOrus <jy6x2b32pie9@yahoo.com> AuthorDate: 2025-03-27 16:30:19 +0000 Commit: Arthur Zamarin <arthurzam@gentoo.org> CommitDate: 2025-04-07 18:59:20 +0000 sci-biology/bfast: update EAPI 7 -> 8, fix build with C99 Closes: https://bugs.gentoo.org/919254 Signed-off-by: NHOrus <jy6x2b32pie9@yahoo.com> Closes: https://github.com/gentoo/gentoo/pull/41322 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> sci-biology/bfast/bfast-0.7.0a-r1.ebuild | 30 ++++++++++++++++++++++++ sci-biology/bfast/files/bfast-0.7.0a-gzeof.patch | 13 ++++++++++ 2 files changed, 43 insertions(+) |
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread -c -o RGIndexAccuracy.o RGIndexAccuracy.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread -c -o RGIndexExons.o RGIndexExons.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread -c -o RGIndexLayout.o RGIndexLayout.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread -c -o RGMatch.o RGMatch.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -O2 -pipe -march=native -fno-diagnostics-color -Wall -pthread -c -o RGMatches.o RGMatches.c RGMatch.c: In function RGMatchRead: RGMatch.c:23:25: error: passing argument 1 of feof from incompatible pointer type [-Wincompatible-pointer-types] 23 | if(feof(fp) != 0) { | ^~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_gnome_systemd-20231123-162118 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10 [2] x86_64-pc-linux-gnu-14 * clang/llvm (if any): clang version 17.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/17/bin Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg /usr/lib/llvm/17 17.0.6 Python 3.11.7 Available Ruby profiles: [1] ruby31 (with Rubygems) * Available Rust versions: [1] rust-bin-1.73.0 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.20.1_p1 [openjdk-bin-11] 2) Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17] *) Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21] 4) Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 [4] openjdk-bin-21 system-vm The Glorious Glasgow Haskell Compilation System, version 9.2.8 php cli (if any): [1] php8.1 [2] php8.2 * go version go1.21.4 linux/amd64 HEAD of ::gentoo commit c244819d9d10956900204b1f0d54b0b1424a6b57 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Tue Dec 5 06:01:57 2023 +0000 2023-12-05 06:01:56 UTC emerge -qpvO sci-biology/bfast [ebuild N ] sci-biology/bfast-0.7.0a USE="-test"