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Bug 913632

Summary: sci-biology/iedera-1.05-r2 - [clang] ./automaton.h: fatal error: ext/slist file not found
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: CONFIRMED ---    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: emerge-info.txt
emerge-history.txt
environment
etc.clang.tar.xz
etc.portage.tar.xz
logs.tar.xz
sci-biology:iedera-1.05-r2:20230903-205739.log
temp.tar.xz

Description Toralf Förster gentoo-dev 2023-09-04 17:49:11 UTC
too long lines were shrinked:

make -j5 
clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS
clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS
clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS
clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS
In file included from automaton.cc:4:
./automaton.h:14:10: fatal error: 'ext/slist' file not found
#include <ext/slist>
         ^~~~~~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_clang-20230902-205829

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 16.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/16/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/16
16.0.6+libcxx
Python 3.11.5
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.72.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.19_p7 [openjdk-bin-11]
*)	Eclipse Temurin JDK 17.0.7_p7 [openjdk-bin-17]
3)	Eclipse Temurin JDK 8.372_p07 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.0.2
php cli (if any):
  [1]   php8.1 *
  [2]   php8.2
go version go1.21.0 linux/amd64

  HEAD of ::gentoo
commit bcb8ebf60c5bdf18333e6e81e1d4910f58c9127e
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Sun Sep 3 20:02:01 2023 +0000

    2023-09-03 20:02:01 UTC

emerge -qpvO sci-biology/iedera
[ebuild  N    ] sci-biology/iedera-1.05-r2
Comment 1 Toralf Förster gentoo-dev 2023-09-04 17:49:12 UTC
Created attachment 869592 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2023-09-04 17:49:13 UTC
Created attachment 869593 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2023-09-04 17:49:14 UTC
Created attachment 869594 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2023-09-04 17:49:15 UTC
Created attachment 869595 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2023-09-04 17:49:15 UTC
Created attachment 869596 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2023-09-04 17:49:16 UTC
Created attachment 869597 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2023-09-04 17:49:17 UTC
Created attachment 869598 [details]
sci-biology:iedera-1.05-r2:20230903-205739.log
Comment 8 Toralf Förster gentoo-dev 2023-09-04 17:49:18 UTC
Created attachment 869599 [details]
temp.tar.xz