* Package: sci-biology/iedera-1.05-r2:0 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking iedera-1.05.tar.gz to /var/tmp/portage/sci-biology/iedera-1.05-r2/work >>> Source unpacked in /var/tmp/portage/sci-biology/iedera-1.05-r2/work >>> Preparing source in /var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05 ... * Applying iedera-1.05-fix-buildsystem.patch ... [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05' ... * Running 'aclocal --system-acdir=/var/tmp/portage/sci-biology/iedera-1.05-r2/temp/aclocal' ... [ ok ] * Moving configure.in to configure.ac (bug #426262) * Running 'autoconf --force' ... [ ok ] * Running 'automake --add-missing --copy --force-missing' ... [ ok ] * Running elibtoolize in: iedera-1.05/ >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05 ... * econf: updating iedera-1.05/config.sub with /usr/share/gnuconfig/config.sub * econf: updating iedera-1.05/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/iedera-1.05-r2 --htmldir=/usr/share/doc/iedera-1.05-r2/html --libdir=/usr/lib64 checking for a BSD-compatible install... /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++ accepts -g... yes checking for clang++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of clang++... none checking for x86_64-pc-linux-gnu-gcc... clang checking whether the compiler supports GNU C... yes checking whether clang accepts -g... yes checking for clang option to enable C11 features... none needed checking whether clang understands -c and -o together... yes checking dependency style of clang... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05 ... make -j5 clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o main.o main.cc clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o automaton.o automaton.cc clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o seed.o seed.cc clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o macro.o macro.cc In file included from automaton.cc:4: ./automaton.h:14:10: fatal error: 'ext/slist' file not found #include ^~~~~~~~~~~ 1 error generated. make: *** [Makefile:401: automaton.o] Error 1 make: *** Waiting for unfinished jobs.... In file included from main.cc:77: ./automaton.h:14:10: fatal error: 'ext/slist' file not found #include ^~~~~~~~~~~ 1 error generated. make: *** [Makefile:401: main.o] Error 1 * ERROR: sci-biology/iedera-1.05-r2::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-biology/iedera-1.05-r2::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/iedera-1.05-r2::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:iedera-1.05-r2:20230903-205739.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/iedera-1.05-r2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/iedera-1.05-r2/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05' * S: '/var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05'