Bug 907989

Summary:	sci-chemistry/gromacs-2023.1 fails tests (MUSL-SYSTEM)
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Alexey Shvetsov <alexxy>
Status:	CONFIRMED ---
Severity:	normal	CC:	sci-chemistry
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log.xz

Description Agostino Sarubbo gentoo-dev

2023-06-07 09:12:00 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-chemistry/gromacs-2023.1 fails tests (MUSL-SYSTEM).
Discovered on: amd64 (internal ref: tinderbox_musl)

NOTE:
(MUSL-SYSTEM) in the summary means that bug was found on a machine that runs MUSL libc but this bug MAY or MAY NOT BE related to musl.

Comment 1 Agostino Sarubbo gentoo-dev

2023-06-07 09:12:02 UTC

Created attachment 863466 [details]
build.log.xz

build log and emerge --info (compressed because it exceeds attachment limit, use 'xzless' to read it)

Comment 2 Agostino Sarubbo gentoo-dev

2023-06-07 09:12:03 UTC

Error(s) that match a know pattern:


	 84 - regressiontests/complex (Timeout)
	 85 - regressiontests/freeenergy (Timeout)
--   Package 'mpi-cxx', required by 'virtual:world', not found
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
-- Could NOT find MPI (missing: MPI_CXX_FOUND CXX) 
-- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) 
-- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0")
FAILED: CMakeFiles/run-ctest-nophys /var/tmp/portage/sci-chemistry/gromacs-2023.1/work/gromacs-2023.1_float/CMakeFiles/run-ctest-nophys