Bug 894622

Summary:	sci-biology/seqan-3.1.0: The SDSL library is required, but wasn't found
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	CONFIRMED ---
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt CMakeError.log CMakeOutput.log emerge-history.txt environment etc.portage.tar.bz2 logs.tar.bz2 sci-biology:seqan-3.1.0:20230215-081121.log temp.tar.bz2

Description Toralf Förster gentoo-dev

2023-02-15 18:30:37 UTC

  https://github.com/xxsds/sdsl-lite
Call Stack (most recent call first):
  build_system/seqan3-config.cmake:379 (seqan3_config_error)
  CMakeLists.txt:29 (find_package)


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/CMakeFiles/CMakeOutput.log".
See also "/var/tmp/portage/sci-biology/seqan-3.1.0/work/seqan3-3.1.0-Source_build/CMakeFiles/CMakeError.log".

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_systemd-j4-20230214-180043

  -------------------------------------------------------------------

GNUMAKEFLAGS="$GNUMAKEFLAGS --jobserver-style=pipe"
gcc-config -l:
 [1] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
/usr/lib/llvm/15
15.0.7
Python 3.10.10
Available Rust versions:
  [1]   rust-1.67.1 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 17.0.6_p10 [openjdk-bin-17]
2)	Eclipse Temurin JDK 8.362_p09 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17  system-vm

php cli (if any):
  [1]   php7.4
  [2]   php8.2 *

  HEAD of ::gentoo
commit 1dadff5210287977554e4a44e4483d61f7588166
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Wed Feb 15 07:02:05 2023 +0000

    2023-02-15 07:02:04 UTC

emerge -qpvO sci-biology/seqan
[ebuild  N    ] sci-biology/seqan-3.1.0  CPU_FLAGS_X86="sse4_2"

Comment 1 Toralf Förster gentoo-dev

2023-02-15 18:30:38 UTC

Created attachment 851352 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2023-02-15 18:30:39 UTC

Created attachment 851354 [details]
CMakeError.log

Comment 3 Toralf Förster gentoo-dev

2023-02-15 18:30:41 UTC

Created attachment 851356 [details]
CMakeOutput.log

Comment 4 Toralf Förster gentoo-dev

2023-02-15 18:30:42 UTC

Created attachment 851358 [details]
emerge-history.txt

Comment 5 Toralf Förster gentoo-dev

2023-02-15 18:30:44 UTC

Created attachment 851360 [details]
environment

Comment 6 Toralf Förster gentoo-dev

2023-02-15 18:30:45 UTC

Created attachment 851362 [details]
etc.portage.tar.bz2

Comment 7 Toralf Förster gentoo-dev

2023-02-15 18:30:46 UTC

Created attachment 851364 [details]
logs.tar.bz2

Comment 8 Toralf Förster gentoo-dev

2023-02-15 18:30:47 UTC

Created attachment 851366 [details]
sci-biology:seqan-3.1.0:20230215-081121.log

Comment 9 Toralf Förster gentoo-dev

2023-02-15 18:30:48 UTC

Created attachment 851368 [details]
temp.tar.bz2