Bug 887683

Summary:	sci-chemistry/gromacs-2023_rc1 - !!! newdoc: .../manual-2023_rc1.pdf does not exist
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Alexey Shvetsov <alexxy>
Status:	RESOLVED FIXED
Severity:	normal	CC:	sci-chemistry
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt emerge-history.txt.bz2 environment etc.clang.tar.bz2 etc.portage.tar.bz2 logs.tar.bz2 sci-chemistry:gromacs-2023_rc1:20221220-220856.log.bz2 temp.tar.bz2

Description Toralf Förster gentoo-dev

2022-12-21 10:20:31 UTC

-- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-grompp.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-bar.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-help.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-distance.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/image/usr/share/man/man1/gmx-sasa.1
 * ERROR: sci-chemistry/gromacs-2023_rc1::gentoo failed (install phase):
 *   !!! newdoc: /var/tmp/portage/sci-chemistry/gromacs-2023_rc1/distdir/manual-2023_rc1.pdf does not exist
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/gromacs-2023_rc1::gentoo'`,

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome_systemd_merged_usr-j4-20221218-160004

  -------------------------------------------------------------------

GNUMAKEFLAGS="$GNUMAKEFLAGS --jobserver-style=pipe"
GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle"
gcc-config -l:
 [1] x86_64-pc-linux-gnu-12 *
clang/llvm (if any):
clang version 15.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/15/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/15
15.0.6
Python 3.10.9
Available Rust versions:
  [1]   rust-bin-1.66.0 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JRE 17.0.5_p8 [openjdk-jre-bin-17]
2)	Eclipse Temurin JRE 8.352_p08 [openjdk-jre-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-jre-bin-8 
  [2]   openjdk-jre-bin-17  system-vm

php cli (if any):
  [1]   php8.2 *

  HEAD of ::gentoo
commit 68bd2e4321ba8d1be072f06e536ecd896c5e79a6
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Tue Dec 20 21:32:11 2022 +0000

    2022-12-20 21:32:11 UTC

emerge -qpvO sci-chemistry/gromacs
[ebuild   R   ] sci-chemistry/gromacs-2023_rc1  USE="custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive openmp single-precision threads tng -blas -build-manual -clang% -clang-cuda% (-cuda) -double-precision -lapack -mkl -mpi -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_10 -python3_8 -python3_9 -python3_11"

Comment 1 Toralf Förster gentoo-dev

2022-12-21 10:20:32 UTC

Created attachment 844395 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2022-12-21 10:20:33 UTC

Created attachment 844397 [details]
emerge-history.txt.bz2

Comment 3 Toralf Förster gentoo-dev

2022-12-21 10:20:34 UTC

Created attachment 844399 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2022-12-21 10:20:35 UTC

Created attachment 844401 [details]
etc.clang.tar.bz2

Comment 5 Toralf Förster gentoo-dev

2022-12-21 10:20:38 UTC

Created attachment 844403 [details]
etc.portage.tar.bz2

Comment 6 Toralf Förster gentoo-dev

2022-12-21 10:20:39 UTC

Created attachment 844405 [details]
logs.tar.bz2

Comment 7 Toralf Förster gentoo-dev

2022-12-21 10:20:40 UTC

Created attachment 844407 [details]
sci-chemistry:gromacs-2023_rc1:20221220-220856.log.bz2

Comment 8 Toralf Förster gentoo-dev

2022-12-21 10:20:41 UTC

Created attachment 844409 [details]
temp.tar.bz2

Comment 9 Larry the Git Cow gentoo-dev

2022-12-22 16:53:36 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e8387da1f4d652ed6404a48d7dca5c4bae9f8e32

commit e8387da1f4d652ed6404a48d7dca5c4bae9f8e32
Author:     Alexey Shvetsov <alexxy@gentoo.org>
AuthorDate: 2022-12-22 16:53:15 +0000
Commit:     Alexey Shvetsov <alexxy@gentoo.org>
CommitDate: 2022-12-22 16:53:15 +0000

    sci-chemistry/gromacs: Fix manual build
    
    Closes: https://bugs.gentoo.org/887611
    Closes: https://bugs.gentoo.org/887683
    Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>

 sci-chemistry/gromacs/gromacs-2023.9999.ebuild | 2 +-
 sci-chemistry/gromacs/gromacs-2023_rc1.ebuild  | 2 +-
 sci-chemistry/gromacs/gromacs-9999.ebuild      | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)