Bug 880413

Summary:	dev-python/netcdf4-1.5.8 - error: Command clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-de
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Related Packages <sci>
Status:	CONFIRMED ---
Severity:	normal	CC:	alex.fan.q, python
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
URL:	https://github.com/Unidata/netcdf4-python/pull/1229
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	870412
Attachments:	emerge-info.txt dev-python:netcdf4-python-1.5.8:20221108-114045.log emerge-history.txt environment etc.portage.tar.bz2 temp.tar.bz2

Description Toralf Förster gentoo-dev

2022-11-08 11:48:09 UTC

too long lines were shrinked:

INFO: Pythran support for package 'scipy.special' will be reduced: this module is not available at runtime.
Pythran support for package 'scipy.special' will be reduced: this module is not available at runtime.
/usr/lib/python3.10/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8/src/netCDF4/_netCDF4.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
error: Command "clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/include -I/usr/lib/python3.10/site-packages/numpy/core/include -Iinclude -I/usr/include/python3.10 -c src/netCDF4/_
 * ERROR: dev-python/netcdf4-python-1.5.8::gentoo failed (compile phase):
 *   (no error message)

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma-j4-20221108-020049

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-12 *
clang/llvm (if any):
clang version 15.0.4
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/15/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/15
15.0.4
Python 3.10.8
Available Rust versions:
  [1]   rust-bin-1.64.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.4.1_p1 [openjdk-bin-17]
*)	Eclipse Temurin JDK 8.345_p01 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm
  [2]   openjdk-bin-17 

The Glorious Glasgow Haskell Compilation System, version 9.0.2
php cli (if any):
GNU Make 4.4

  HEAD of ::gentoo
commit 6b7d18af98afa39f106439075c424fa5b5d90739
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Tue Nov 8 10:16:53 2022 +0000

    2022-11-08 10:16:52 UTC

emerge -qpvO dev-python/netcdf4-python
[ebuild  N    ] dev-python/netcdf4-python-1.5.8  USE="-test" PYTHON_TARGETS="python3_10 -python3_8 -python3_9 -python3_11"

Comment 1 Toralf Förster gentoo-dev

2022-11-08 11:48:09 UTC

Created attachment 829229 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2022-11-08 11:48:10 UTC

Created attachment 829231 [details]
dev-python:netcdf4-python-1.5.8:20221108-114045.log

Comment 3 Toralf Förster gentoo-dev

2022-11-08 11:48:11 UTC

Created attachment 829233 [details]
emerge-history.txt

Comment 4 Toralf Förster gentoo-dev

2022-11-08 11:48:13 UTC

Created attachment 829235 [details]
environment

Comment 5 Toralf Förster gentoo-dev

2022-11-08 11:48:14 UTC

Created attachment 829237 [details]
etc.portage.tar.bz2

Comment 6 Toralf Förster gentoo-dev

2022-11-08 11:48:15 UTC

Created attachment 829239 [details]
temp.tar.bz2

Comment 7 Sam James archtester

2023-01-07 09:03:21 UTC

Thanks for the work on these Alex - pls backport fixes where appropriate into Gentoo. CHeers!