* Package: dev-python/netcdf4-python-1.5.8:0 * Repository: gentoo * Maintainer: sci@gentoo.org python@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python3_10 userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking netCDF4-1.5.8.tar.gz to /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work >>> Source unpacked in /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work >>> Preparing source in /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8 ... * Build system packages: * dev-python/setuptools : 65.5.1 >>> Source prepared. * Clang 16 testing: this build is using a /etc/portage/bashrc hook! >>> Configuring source in /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8 ... * python3_10: running distutils-r1_run_phase distutils-r1_python_compile python3.10 setup.py build -j 4 Package hdf5 was not found in the pkg-config search path. Perhaps you should add the directory containing `hdf5.pc' to the PKG_CONFIG_PATH environment variable Package 'hdf5', required by 'virtual:world', not found reading from setup.cfg... using nc-config... checking /usr/include ... HDF5 library version: 1.12.2 headers found in /usr/include using netcdf library version b'4.9.0' using Cython to compile netCDF4.pyx... netcdf lib has group rename capability netcdf lib has nc_inq_path function netcdf lib has nc_inq_format_extended function netcdf lib has nc_open_mem function netcdf lib has nc_create_mem function netcdf lib has cdf-5 format capability netcdf lib does not have netcdf4 parallel functions netcdf lib does not have pnetcdf parallel functions running build running build_py creating /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8-python3_10/lib/netCDF4 copying src/netCDF4/utils.py -> /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8-python3_10/lib/netCDF4 copying src/netCDF4/__init__.py -> /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8-python3_10/lib/netCDF4 warning: build_py: byte-compiling is disabled, skipping. running build_ext cythoning src/netCDF4/_netCDF4.pyx to src/netCDF4/_netCDF4.c INFO: Disabling color, you really want to install colorlog. Disabling color, you really want to install colorlog. INFO: Pythran support for package 'scipy' will be reduced: this module is not available at runtime. Pythran support for package 'scipy' will be reduced: this module is not available at runtime. INFO: Pythran support for package 'scipy.special' will be reduced: this module is not available at runtime. Pythran support for package 'scipy.special' will be reduced: this module is not available at runtime. /usr/lib/python3.10/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8/src/netCDF4/_netCDF4.pyx tree = Parsing.p_module(s, pxd, full_module_name) error: Command "clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/usr/include -I/usr/lib/python3.10/site-packages/numpy/core/include -Iinclude -I/usr/include/python3.10 -c src/netCDF4/_netCDF4.c -o /var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8-python3_10/temp.linux-x86_64-3.10/src/netCDF4/_netCDF4.o" failed with exit status 1 * ERROR: dev-python/netcdf4-python-1.5.8::gentoo failed (compile phase): * (no error message) * * Call stack: * ebuild.sh, line 122: Called src_compile * environment, line 3528: Called distutils-r1_src_compile * environment, line 1592: Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile' * environment, line 725: Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 3211: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 2617: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 2615: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile' * environment, line 1052: Called distutils-r1_run_phase 'distutils-r1_python_compile' * environment, line 1574: Called distutils-r1_python_compile * environment, line 1383: Called esetup.py 'build' '-j' '4' * environment, line 2156: Called die * The specific snippet of code: * "${@}" || die -n; * * If you need support, post the output of `emerge --info '=dev-python/netcdf4-python-1.5.8::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-python/netcdf4-python-1.5.8::gentoo'`. * The complete build log is located at '/var/log/portage/dev-python:netcdf4-python-1.5.8:20221108-114045.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-python/netcdf4-python-1.5.8/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/netcdf4-python-1.5.8/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8' * S: '/var/tmp/portage/dev-python/netcdf4-python-1.5.8/work/netCDF4-1.5.8'