Bug 873310

Summary:	sci-libs/htslib-1.15.1 fails tests (MUSL)
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	RESOLVED FIXED
Severity:	normal	Keywords:	PullRequest
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
See Also:	https://github.com/gentoo/gentoo/pull/29661
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2022-09-28 14:40:25 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-libs/htslib-1.15.1 fails tests (MUSL).
Discovered on: amd64 (internal ref: tinderbox_musl)

NOTE:
This machine uses MUSL libc

Comment 1 Agostino Sarubbo gentoo-dev

2022-09-28 14:40:28 UTC

Created attachment 814504 [details]
build.log

build log and emerge --info

Comment 2 Agostino Sarubbo gentoo-dev

2022-09-28 14:40:29 UTC

Error(s) that match a know pattern:


Testing rans4x16 -r -o1 on ./dat/q4	./rans4x16.test: line 12:  7908 Segmentation fault      ./rans4x16pr -r -o$o $out/r4x16-nl $out/r4x16.comp 2>> $out/r4x16.stderr

Comment 3 Larry the Git Cow gentoo-dev

2023-02-19 15:44:30 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d16051f7223082375cc255d34da4a12737092748

commit d16051f7223082375cc255d34da4a12737092748
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2023-02-19 15:44:21 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2023-02-19 15:44:21 +0000

    sci-libs/htslib: drop 1.15.1
    
    Closes: https://github.com/gentoo/gentoo/pull/29661
    Closes: https://bugs.gentoo.org/873310
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-libs/htslib/Manifest             |  1 -
 sci-libs/htslib/htslib-1.15.1.ebuild | 52 ------------------------------------
 2 files changed, 53 deletions(-)