Bug 873025

Summary:	sci-biology/augustus-3.4.0-r2 fails tests (MUSL)
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	CONFIRMED ---
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2022-09-26 09:21:45 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/augustus-3.4.0-r2 fails tests (MUSL).
Discovered on: amd64 (internal ref: tinderbox_musl)

NOTE:
This machine uses MUSL libc

Comment 1 Agostino Sarubbo gentoo-dev

2022-09-26 09:21:49 UTC

Created attachment 814237 [details]
build.log

build log and emerge --info

Comment 2 Agostino Sarubbo gentoo-dev

2022-09-26 09:21:50 UTC

Error(s) that match a know pattern:


' != ''
' != '' : *** expected_results/test_ab_initio_prediction/augustus.gff
' != '' : *** expected_results/test_format_and_error_out/augustus.gff3
' != '' : *** expected_results/test_training_new_species/test.out
AssertionError: '*** ../../tests/examples/expected_results[4451 chars]";
AssertionError: '*** ../../tests/examples/expected_results[5307 chars]";
AssertionError: '*** ../../tests/examples/expected_results[5421 chars]";
AssertionError: '*** expected_results/test_ab_initio_predi[405399 chars]";
AssertionError: '*** expected_results/test_format_and_erro[264026 chars]t1
AssertionError: '*** expected_results/test_training_new_sp[136692 chars]";
FAIL: test_ab_initio_prediction (__main__.TestAugustus)
FAIL: test_cgp (__main__.TestAugustus)
FAIL: test_cgp_sqlite (__main__.TestAugustus)
FAIL: test_cgp_sqlite_hints (__main__.TestAugustus)
FAIL: test_format_and_error_out (__main__.TestAugustus)
FAIL: test_training_new_species (__main__.TestAugustus)
FAILED (failures=6)