Bug 833482

Summary:	sci-chemistry/ParmEd-3.4.3 fails tests: ModuleNotFoundError: No module named numpy - ModuleNotFoundError: No module named simtk
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Alexey Shvetsov <alexxy>
Status:	RESOLVED FIXED
Severity:	normal	CC:	sci-chemistry
Priority:	Normal	Keywords:	PMASKED
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2022-02-16 13:17:37 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-chemistry/ParmEd-3.4.3 fails tests.
Discovered on: amd64 (internal ref: ci)

NOTE:
If you think this is a GCC-11 related issue, please block bug 732706.

Comment 1 Agostino Sarubbo gentoo-dev

2022-02-16 13:17:39 UTC

Created attachment 765260 [details]
build.log

build log and emerge --info

Comment 2 Agostino Sarubbo gentoo-dev

2022-02-16 13:17:40 UTC

Error(s) that match a know pattern in addition to what has been reported in the summary:


E   ModuleNotFoundError: No module named 'numpy'
E   ModuleNotFoundError: No module named 'simtk'

Comment 3 Larry the Git Cow gentoo-dev

2025-04-03 16:19:55 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=399d0df71e48065c5e92d18e9d8ae05da5b286e9

commit 399d0df71e48065c5e92d18e9d8ae05da5b286e9
Author:     Alexey Shvetsov <alexxy@gentoo.org>
AuthorDate: 2025-04-03 16:18:36 +0000
Commit:     Alexey Shvetsov <alexxy@gentoo.org>
CommitDate: 2025-04-03 16:19:46 +0000

    sci-chemistry/ParmEd: add 4.3.0, drop 3.4.3
    
    Closes: https://bugs.gentoo.org/833482
    Closes: https://bugs.gentoo.org/897196
    Closes: https://bugs.gentoo.org/910018
    Closes: https://bugs.gentoo.org/923273
    Closes: https://bugs.gentoo.org/929760
    Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>

 sci-chemistry/ParmEd/Manifest                      |   2 +-
 .../{ParmEd-3.4.3.ebuild => ParmEd-4.3.0.ebuild}   |  19 +-
 .../ParmEd/files/ParmEd-4.3.0-tests.patch          | 191 +++++++++++++++++++++
 3 files changed, 209 insertions(+), 3 deletions(-)