| Summary: | sci-biology/ncbi-tools-2.2.26-r2 - ncbi_socket.c: internal compiler error:<snip> Segmentation fault | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | treecleaner |
| Priority: | Normal | Keywords: | PMASKED |
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tar.bz2 logs.tar.bz2 sci-biology:ncbi-tools-2.2.26-r2:20210413-235608.log |
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Created attachment 699762 [details]
emerge-info.txt
Created attachment 699765 [details]
emerge-history.txt
Created attachment 699768 [details]
environment
Created attachment 699771 [details]
etc.portage.tar.bz2
Created attachment 699774 [details]
logs.tar.bz2
Created attachment 699777 [details]
sci-biology:ncbi-tools-2.2.26-r2:20210413-235608.log
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=59b2be273d92b67c4c7f581657151a5e7cbb63ae commit 59b2be273d92b67c4c7f581657151a5e7cbb63ae Author: Jakov Smolić <jsmolic@gentoo.org> AuthorDate: 2021-08-30 17:17:23 +0000 Commit: Jakov Smolić <jsmolic@gentoo.org> CommitDate: 2021-08-30 17:38:50 +0000 sci-biology/ncbi-tools: Remove last-rited package Closes: https://bugs.gentoo.org/649930 Closes: https://bugs.gentoo.org/782790 Closes: https://bugs.gentoo.org/741188 Closes: https://bugs.gentoo.org/715636 Closes: https://bugs.gentoo.org/710338 Closes: https://bugs.gentoo.org/701340 Closes: https://bugs.gentoo.org/586982 Closes: https://bugs.gentoo.org/295584 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> profiles/package.mask | 6 - sci-biology/ncbi-tools/Manifest | 1 - sci-biology/ncbi-tools/files/21ncbi-r1 | 6 - .../files/ncbi-tools-2.2.26-_DEFAULT_SOURCE.patch | 81 ---------- .../files/ncbi-tools-2.2.26-bfr-overflow.patch | 103 ------------- .../files/ncbi-tools-2.2.26-format-security.patch | 124 --------------- .../ncbi-tools/files/ncbi-tools-extra_vib.patch | 37 ----- sci-biology/ncbi-tools/files/ncbi-tools-lop.patch | 15 -- sci-biology/ncbi-tools/files/ncbirc | 2 - sci-biology/ncbi-tools/metadata.xml | 8 - sci-biology/ncbi-tools/ncbi-tools-2.2.26-r3.ebuild | 169 --------------------- 11 files changed, 552 deletions(-) |
during GIMPLE pass: strlen ncbi_socket.c: In function ‘DSOCK_SendMsg’: ncbi_socket.c:6631:19: internal compiler error: Segmentation fault 6631 | extern EIO_Status DSOCK_SendMsg(SOCK sock, | ^~~~~~~~~~~~~ 0xb158af crash_signal ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_hardened-20210410-191300 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10.3.0 * clang version 11.1.0 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/11/bin /usr/lib/llvm/11 11.1.0 Python 3.8.9 Available Ruby profiles: [1] ruby26 (with Rubygems) [2] ruby30 (with Rubygems) * Available Rust versions: [1] rust-1.51.0 * The following VMs are available for generation-2: *) AdoptOpenJDK 8.282_p08 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm The Glorious Glasgow Haskell Compilation System, version 8.10.4 timestamp(s) of HEAD at this tinderbox image: /var/db/repos/gentoo Tue Apr 13 23:20:17 UTC 2021 emerge -qpvO sci-biology/ncbi-tools [ebuild N ] sci-biology/ncbi-tools-2.2.26-r2 USE="-X -doc -static-libs"