Bug 777840 – sci-libs/coinor-clp-1.17.6 - /.../ld: /.../libdmumps.so: undefined reference to dorgqr_

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Toralf Förster 2021-03-23 08:06:47 UTC]

/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libdmumps.so: undefined reference to `dorgqr_'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libzmumps.so: undefined reference to `zungqr_'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libdmumps.so: undefined reference to `dormqr_'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/libcmumps.so: undefined reference to `cunmqr_'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_systemd-20210320-151517

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10.2.0 *
/usr/lib/llvm/11
11.1.0
Python 3.8.8
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby27 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.50.0 *
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.282_p08 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Mon Mar 22 20:06:02 UTC 2021

emerge -qpvO sci-libs/coinor-clp
[ebuild  N    ] sci-libs/coinor-clp-1.17.6  USE="metis mumps -doc -examples -glpk -sparse -static-libs -test"

[Comment 1 Toralf Förster 2021-03-23 08:06:48 UTC]

Created attachment 693159 [details]
logs.tar.bz2

[Comment 2 Toralf Förster 2021-03-23 08:06:50 UTC]

Created attachment 693162 [details]
sci-libs:coinor-clp-1.17.6:20210322-221525.log

[Comment 3 Toralf Förster 2021-03-23 08:11:24 UTC]

appeared recently at the tinderbox image 17.1_systemd-20210320-151517

[Comment 4 Toralf Förster 2021-03-23 08:11:25 UTC]

Created attachment 693165 [details]
emerge-info.txt

[Comment 5 Toralf Förster 2021-03-23 08:11:26 UTC]

Created attachment 693168 [details]
emerge-history.txt

[Comment 6 Toralf Förster 2021-03-23 08:11:28 UTC]

Created attachment 693171 [details]
environment

[Comment 7 Toralf Förster 2021-03-23 08:11:29 UTC]

Created attachment 693174 [details]
etc.portage.tar.bz2

[Comment 8 Toralf Förster 2021-03-23 08:11:30 UTC]

Created attachment 693177 [details]
logs.tar.bz2

[Comment 9 Toralf Förster 2021-03-23 08:11:32 UTC]

Created attachment 693180 [details]
sci-libs:coinor-clp-1.17.6:20210322-221525.log

[Comment 10 Agostino Sarubbo 2021-03-23 08:17:14 UTC]

*** This bug has been marked as a duplicate of bug 703598 ***

[Comment 11 Michael Orlitzky 2021-03-23 12:25:49 UTC]

Hm, we should keep one of these open. This bug fulfils the "test request" in the other one, so I'll reopen this one for the newer package.

[Comment 12 Alessandro Barbieri 2021-09-06 22:37:33 UTC]

it's mumps that's severely underlinked

[Comment 13 Larry the Git Cow 2021-09-07 17:56:41 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c6902b80403a506ebe337818c849f7d468294927

commit c6902b80403a506ebe337818c849f7d468294927
Author:     Michael Orlitzky <[e-mail]>
AuthorDate: 2021-09-07 17:53:50 +0000
Commit:     Michael Orlitzky <[e-mail]>
CommitDate: 2021-09-07 17:54:41 +0000

    sci-libs/mumps: new revision to fix more underlinking.
    
    When building without USE=mpi, the various lib*mumps libraries use
    LAPACK symbols without actually linking to liblapack. There are
    already a bunch of hacks in the mumps ebuild to work around these
    issues, so all I've done is add one more. As a simple test case,
    you can try to run the test suite for sci-libs/coinor-clp with
    USE="mumps metis", which now works.
    
    Closes: https://bugs.gentoo.org/777840
    Package-Manager: Portage-3.0.20, Repoman-3.0.3
    Signed-off-by: Michael Orlitzky <[e-mail]>

 sci-libs/mumps/{mumps-5.3.5.ebuild => mumps-5.3.5-r1.ebuild} | 4 ++++
 1 file changed, 4 insertions(+)