| Summary: | sci-libs/vtk-8.2.0 fails to compile - projects.h no such file | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Bob Johnson <bob> |
| Component: | Current packages | Assignee: | Gentoo Science Related Packages <sci> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | aballier, fordfrog, jfostiguy, jstein, lotgyero, phobosk, zoltan |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: | bzip2 build log | ||
Created attachment 635582 [details]
bzip2 build log
Yeah seems the dev doesn't yet support sci-libs/proj-7.0.0 and in his repo he has restricted to 6.0.0 https://github.com/waebbl/waebbl-gentoo/commit/1794e4b6b387b508b8d04f9adf3bb00f89e058fb It looks like they changed the Cmake flag for disabling system libproj usage. In <=8.1 it was "-DVTK_USE_SYSTEM_LIBPROJ4=OFF", in >=8.2 it is now "-DVTK_USE_SYSTEM_LIBPROJ=OFF". It's on line 170 of the 8.2.0 ebuild. That should be the only change necessary. The 8.2 release still only supports proj v4. The master branch supports up to v6, but this was not backported to 8.2. I briefly looked into how easy it would be to backport the patch, but it depends on some other changes to the build system that also didn't make it into 8.2. *** This bug has been marked as a duplicate of bug 721412 *** The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3f2c91135dfa6781d30f033979b5c751bb4a849b commit 3f2c91135dfa6781d30f033979b5c751bb4a849b Author: Matthias Maier <tamiko@gentoo.org> AuthorDate: 2020-05-12 13:57:45 +0000 Commit: Matthias Maier <tamiko@gentoo.org> CommitDate: 2020-05-12 15:34:15 +0000 sci-libs/vtk: fix 8.2.0 ebuild - fix bundled libproj configuration. Thanks to Tiernan Hubble for pointing this out - use system mpi4py Closes: https://bugs.gentoo.org/720372 Closes: https://bugs.gentoo.org/721412 Closes: https://bugs.gentoo.org/721802 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org> sci-libs/vtk/vtk-8.2.0.ebuild | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) |
The vtk build fails with: In file included from /var/tmp/portage/sci-libs/vtk-8.2.0/work/VTK-8.2.0/Geovis/Core/vtkGeoProjection.cxx:30: ThirdParty/libproj/vtk_libproj.h:21:11: fatal error: projects.h: No such file or directory 21 | # include <projects.h> | ^~~~~~~~~~~~ compilation terminated. Reproducible: Always # emerge -pv sci-libs/vtk These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ~] sci-libs/vtk-8.2.0::gentoo [8.1.0-r6::gentoo] USE="X doc java odbc postgres qt5 rendering theora -R -all-modules (-aqua) -boost (-examples) -ffmpeg -gdal -imaging -json -mpi -offscreen -python -tbb -tcl -test -tk -views -web -xdmf2 (-mysql%)" PYTHON_SINGLE_TARGET="python3_6" VIDEO_CARDS="-nvidia" 0 KiB # emerge --info Portage 2.3.89 (python 3.6.10-final-0, default/linux/amd64/17.1/desktop/plasma, gcc-9.3.0, glibc-2.30-r8, 5.4.28-gentoo x86_64) ================================================================= System uname: Linux-5.4.28-gentoo-x86_64-Intel-R-_Core-TM-_i5-3570_CPU_@_3.40GHz-with-gentoo-2.6 KiB Mem: 32928784 total, 7031852 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Sat, 02 May 2020 02:15:02 +0000 Head commit of repository gentoo: f6962f3d6b96d6cb64bdb8ae0fd04658cefcdd73 Timestamp of repository stefantalpalaru: Fri, 01 May 2020 10:40:34 +0000 Head commit of repository stefantalpalaru: bbb121aa1b38fc1eb17be77bc98f7d0e98589cc9 sh bash 4.4_p23-r1 ld GNU ld (Gentoo 2.33.1 p2) 2.33.1 app-shells/bash: 4.4_p23-r1::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.30.1::gentoo dev-lang/python: 2.7.18::gentoo, 3.6.10-r2::gentoo, 3.7.7-r2::gentoo, 3.8.2-r2::gentoo dev-util/cmake: 3.16.5::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.42.1::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.16.1-r1::gentoo sys-devel/binutils: 2.33.1-r1::gentoo sys-devel/gcc: 9.3.0::gentoo sys-devel/gcc-config: 2.2.1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.4::gentoo (virtual/os-headers) sys-libs/glibc: 2.30-r8::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.namerica.gentoo.org/gentoo-portage/ priority: -1000 sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-verify-max-age: 24 local location: /usr/local/portage masters: gentoo stefantalpalaru location: /var/db/repos/stefantalpalaru sync-type: git sync-uri: https://github.com/gentoo-mirror/stefantalpalaru.git masters: gentoo ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="@FREE vmware" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.4/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/vmware-installer" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-march=native -O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-march=native -O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en en_US" MAKEOPTS="-j5" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi activities alsa amd64 apache2 berkdb bluetooth branding bzip2 cairo cdda cdr cli colord crypt cups curl dbus declarative doc dri dts dvd dvdr elogind emboss encode examples exif flac fontconfig fortran gcj gd gdbm gif gtk gtk-doc handbook iconv icu ipv6 jack java jbig jpeg kde kipi kpathsea kwallet lcms ldap libnotify libtirpc lzma mad mbox mng mp3 mp4 mpeg multilib ncurses nls nptl odbc ogg openexr opengl openmp pam pango pcre pdf phonon plasma png policykit postgres ppds qml qt5 readline sdl seccomp semantic-desktop source spell split-usr ssl startup-notification svg t1lib tcpd threads tiff truetype udev udisks unicode upower usb vim-syntax vorbis webp widgets wxwidgets x264 xattr xcb xcomposite xinerama xml xpm xv xvid zlib" ABI_X86="64 32" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_core authn_dbd authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers http2 ident imagemap include info lbmethod_byrequests log_config log_forensic logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="libinput vmmouse wacom joystick" KERNEL="linux" L10N="en en-US" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver presenter-minimizer wiki-publisher" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24 ruby25" SANE_BACKENDS="epson2" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel radeonsi vesa vmware" XFCE_PLUGINS="clock trash" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS Possibly an issue with current stable sci-libs/proj? See: https://github.com/waebbl/waebbl-gentoo/issues/86