| Summary: | sci-biology/lagan-2.0-r3 : fails to build with -fno-common or gcc-10 | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 705764 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 sci-biology:lagan-2.0-r3:20200130-000914.log temp.tbz2 |
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Created attachment 608686 [details]
emerge-info.txt
Created attachment 608688 [details]
emerge-history.txt
Created attachment 608690 [details]
environment
Created attachment 608692 [details]
etc.portage.tbz2
Created attachment 608694 [details]
sci-biology:lagan-2.0-r3:20200130-000914.log
Created attachment 608696 [details]
temp.tbz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=053ec438e912e15f1a98959c59d4f08903d31138 commit 053ec438e912e15f1a98959c59d4f08903d31138 Author: David Seifert <soap@gentoo.org> AuthorDate: 2020-11-01 18:36:21 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2020-11-01 18:36:21 +0000 sci-biology/lagan: Port to EAPI 7 * Fix building against GCC 10 / -fno-common * Fix building against C99 / -O0 * Fix broken build system * Import patches from Debian Closes: https://bugs.gentoo.org/685736 Closes: https://bugs.gentoo.org/688700 Closes: https://bugs.gentoo.org/707404 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> .../lagan/files/lagan-2.0-C99-static-inline.patch | 258 +++++++++++ .../lagan/files/lagan-2.0-ambiguous-end.patch | 49 +++ .../files/lagan-2.0-conflicting-getline.patch | 24 ++ sci-biology/lagan/files/lagan-2.0-fix-c++14.patch | 473 --------------------- sci-biology/lagan/files/lagan-2.0-gcc-10.patch | 27 ++ sci-biology/lagan/files/lagan-2.0-gcc-4.8.patch | 25 ++ sci-biology/lagan/files/lagan-2.0-gcc-9.patch | 25 ++ sci-biology/lagan/files/lagan-2.0-gcc4.3.patch | 23 - ...an-2.0-flags.patch => lagan-2.0-makefile.patch} | 109 ++--- .../files/lagan-2.0-qa-implicit-declarations.patch | 63 +-- sci-biology/lagan/lagan-2.0-r3.ebuild | 71 ---- sci-biology/lagan/lagan-2.0-r4.ebuild | 67 +++ 12 files changed, 550 insertions(+), 664 deletions(-) |
| ~^ ~~~~~~~~~~~ | | | | unsigned int void * | %p /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-biology/lagan-2.0-r3/temp/ccaWaStg.o:(.bss+0x20): multiple definition of `indeces'; /var/tmp/portage/sci-biology/lagan-2.0-r3/temp/ccI50tNk.o:(.bss+0x40080): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-biology/lagan-2.0-r3/temp/ccI50tNk.o: in function `connectToPrev': ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no-multilib-20200124-204141 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * clang: clang version 9.0.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/9/bin llvm: 9.0.1 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 [3] python3.6 [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.40.0 * java-config: The following VMs are available for generation-2: *) AdoptOpenJDK 8.242_p08 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm ghc: The Glorious Glasgow Haskell Compilation System, version 8.0.2 repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Wed, 29 Jan 2020 23:06:23 +0000 emerge -qpvO sci-biology/lagan [ebuild N ] sci-biology/lagan-2.0-r3