Summary: | sci-visualization/paraview-5.6.1[openmp]: ... error: ‘numVals’ is predetermined ‘shared’ for ‘shared’ | ||
---|---|---|---|
Product: | Gentoo Linux | Reporter: | Jouni Kosonen <jouni.kosonen> |
Component: | Current packages | Assignee: | Matthias Maier <tamiko> |
Status: | RESOLVED FIXED | ||
Severity: | normal | CC: | dan, hangglider, ilovekiruna, mail, progenyx, richard.kenney, scott, skruppy+gentoo, tb, thomas |
Priority: | Normal | ||
Version: | unspecified | ||
Hardware: | All | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- | |
Attachments: | build.log |
Description
Jouni Kosonen
2019-07-01 00:41:36 UTC
Oh, also this:
...
> >>> Configuring source in /var/tmp/portage/sci-visualization/paraview-5.6.1/work/ParaView-v5.6.1 ...
> /var/tmp/portage/sci-visualization/paraview-5.6.1/temp/environment: line 3853: qt5_get_bindir: command not found
> /var/tmp/portage/sci-visualization/paraview-5.6.1/temp/environment: line 3853: qt5_get_bindir: command not found
> /var/tmp/portage/sci-visualization/paraview-5.6.1/temp/environment: line 3853: qt5_get_bindir: command not found
> >>> Working in BUILD_DIR: "/var/tmp/portage/sci-visualization/paraview-5.6.1/work/paraview-5.6.1_build"
> cmake -C ... -DQT_MOC_EXECUTABLE=/moc -DQT_UIC_EXECUTABLE=/uic -DQT_QMAKE_EXECUTABLE=/qmake ...
qt5_get_bindir is defined in qmake-utils.eclass but the ebuild doesn't inherit that.
i run into the same issue, ... > With USE=-openmp it builds successfully. ... and this fixed it here, too. emerge --info sci-visualization/paraview [69/1861] Portage 2.3.66 (python 3.6.5-final-0, default/linux/amd64/17.0/desktop, gcc-8.3.0, glibc-2.29-r2, 5.1.15-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-5.1.15-gentoo-x86_64-Intel_Xeon_E312xx_-Sandy_Bridge-with-gentoo-2.6 KiB Mem: 49354276 total, 43127920 free KiB Swap: 33554428 total, 33554428 free Timestamp of repository gentoo: Wed, 03 Jul 2019 00:15:01 +0000 Head commit of repository gentoo: 6161e3ea01caecf1f49bdfd29702b8ac0d9a5dd7 sh bash 4.4_p23-r1 ld GNU ld (Gentoo 2.31.1 p7) 2.31.1 app-shells/bash: 4.4_p23-r1::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.28.2-r1::gentoo dev-lang/python: 2.7.15::gentoo, 3.6.5::gentoo dev-util/cmake: 3.14.3::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.41.2::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.11.6-r3::gentoo, 1.13.4-r2::gentoo, 1.15.1-r2::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.31.1-r6::gentoo, 2.32-r1::gentoo sys-devel/gcc: 8.3.0-r1::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r3::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.0-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://192.168.45.107/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: x-portage location: /usr/local/portage masters: gentoo priority: 0 barzog-overlay location: /var/lib/layman/barzog-overlay masters: gentoo priority: 50 java location: /var/lib/layman/java masters: gentoo priority: 50 python location: /var/lib/layman/python masters: gentoo priority: 50 rion location: /var/lib/layman/rion masters: gentoo priority: 50 science location: /var/lib/layman/science masters: gentoo priority: 50 seden location: /var/lib/layman/seden masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=sandybridge -fomit-frame-pointer -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/fax /usr/share/gnupg/qualified.txt /var/spool/fax/etc /var/spool/munin-async/.ssh" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php7.2/ext-active/ /etc/php/apache2-php7.3/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php7.2/ext-active/ /etc/php/cgi-php7.3/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php7.2/ext-active/ /etc/php/cli-php7.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /var/spool/fax/etc/xferfaxlog" CXXFLAGS="-march=sandybridge -fomit-frame-pointer -O2 -pipe" DISTDIR="/mnt/gentoo/distfiles/" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" INSTALL_MASK="/usr/lib/systemd/" LANG="en_IE.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en_GB en en_US de_DE de" MAKEOPTS="-j128" PKGDIR="/mnt/gentoo/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/mnt/gentoo/tmp" USE="R X X509 a52 aac aalib accounting acl acpi adns aim aio alsa amd64 amr ansi ao aot apache2 apng applet archive ass audio audiofile automount avahi avx awt bacula-console bash-completion bazaar bcmath berkdb bidi bind-mysql bittorrent blas bluetooth bluray bonobo boost bzip2 cacert cairo caja calendar caps ccache cdb cdda cddb cdio cdparanoia cdr cgi chipcard chroot clang colord command-args corefonts cpudetection cpulimit cracklib cramfs crypt cscope css csv ctype cups curl curlwrappers customlog cvs cvsgraph cxx cyrus dba dbi dbm dbus dbx devhelp device-mapper devmap dga dhcp dirac directfb djvu dlna dlopen dnsdb dri dri3 drm dts dv dvb dvd dvdr dvi ecc egl elogind enchant encode excel exif expat faad fam fastcgi fat fdk ffmpeg fftw fits flac flash flatfile fltk fontconfig fonts fpx ftp fuse fusefs gallium gd gdal gdbm gdu geoclue geoip geos ggi gif gimp ginac git glib glpk glut gmp gnome-keyring gnuplot gpg gphoto2 graphviz gs gsf gsl gsm gssapi gstreamer gtk gtk2 gtk3 gudev gzip h323 hardened hardenedphp hddtemp hdf5 hdri highlight hpn html http hunspell hwdb iconv icq icu idea idled idn imagemagick imap imlib imlib2 inifile innodb int64 introspection ios ipalias ipc ipod ipv6 iso jabber jack java javascript jbig jingle jit jpeg jpeg2k json kdrive kerberos keymap kmod kpathsea lame lapack latex lcms ldap less libass libcaca libcerf libcxx libnotify libsamplerate libv4l libv4l2 libwww live llvm lm_sensors lmtp logrotate logwatch lua lz4 lzma lzo mad magic mathml matplotlib matroska mbox mcal md5sum memlimit mercurial metis mgetty mhash midi milter mime mimencode ming mmap mms mmx mmxext mng mp3 mp4 mpeg mpir mplayer msn mtp multilib mumps musepack musicbrainz mysql mysqli nagios-dns nagios-game nagios-ntp nagios-ping nagios-ssh natspec ncurses net netboot netcdf netlink network network-uri networkmanager nfs nis nls nntp nptl nsplugin nss ntfs ntp oav ocaml ocamlopt ocatve ocr octave odbc offensive ogg openal openexr opengl openh264 openrc openssh openssl opus orc ortp osc oscar pam pam_chroot pam_console pam_timestamp pango parse-clocks pcf pci pcntl pcre pda pdf pdfkit pdflib perl pgo php pic plotutils png policykit portaudio posix postfix postgis postgres postproc postscript ppds procmail ps pulseaudio pwdb python qdbm qt5 quotas quvi radius raw rdesktop rdp readline recode reiserfs rpc rrdtool rss rtmp ruby samba sample sasl scanner schroedinger scotch screen sendfile sensord session sftp sftplogging shaper shared sharedext shorten shout sieve simplexml slang slp smartcard smime smp sms smtp sna sndfile snmp snortsam soap sockets socks5 sound sox spamassassin sparse spatialite speex spell spice spl split-usr sql sqlite sqlite3 sse sse2 sse3 sse4 sse4_1 ssh ssl ssse3 stream subversion svg sysfs syslog sysvipc szip t1lib taglib tcpd telepathy test-programs theora threads tidy tiff timidity tokenizer tools transparent-proxy truetype truetype-fonts tslib twolame type1-fonts udev udisks unicode upnp upnp-av upower usb userlocales utf8 uuid v4l vaapi vala vcd vdpau vhosts video vim-syntax virtual-users virus-scan vnc vorbis vpx vte wayland wddx weather webdav webkit webm webp wifi win32codecs withsamplescripts wmf x264 x265 xattr xcb xcomposite xetex xface xfs xft xinerama xinetd xml xml2 xmlrpc xmp xmpp xorg xosd xpdf-headers xpm xps xrandr xscreensaver xsl xslt xv xvfb xvid xvmc xz yahoo yaml yaz zeromq zlib zvbi" ABI_X86="32 64" APACHE2_MODULES="access auth auth_basic auth_digest authn_default authn_core authn_file authn_dbm authn_dbd authn_alias authn_anon authz_core authz_groupfile authz_host authz_user authz_dbd authz_dbm authz_owner authz_default dbd ident imagemap alias echo charset_lite cache file_cache disk_cache mem_cache ext_filter case_filter case-filter-in deflate filter mime_magic cern_meta proxy proxy_connect proxy_ftp http2 proxy_html proxy_http proxy_ajp proxy_balancer proxy_fcgi proxy_wstunnel expires headers usertrack info include cgi cgid dav dav_lock dav_fs vhost_alias speling rewrite log_config logio env setenvif mime status substitute autoindex asis negotiation dir imap actions userdir so unique_id version dumpio log_forensic reqtimeout socache_shmcb unixd slotmem_shm ratelimit remoteip lbmethod_bybusyness lbmethod_byrequests lbmethod_bytraffic lbmethod_heartbeat xml2enc brotli watchdog" APACHE2_MPMS="worker" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="openssl" ELIBC="glibc" FFTOOLS="cws2fws ffhash pktdumper sidxindex qt-faststart aviocat ismindex" GPSD_PROTOCOLS="aivdm sirf mtk3301 gpsclock superstar2 timing nmea" GRUB_PLATFORMS="pc multiboot efi coreboot efi-64" INPUT_DEVICES="keyboard mouse evdev wacom synaptics" KERNEL="linux" L10N="en_GB en en_US de_DE de" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer nlpsolver pdfimport wiki-publisher" LLVM_TARGETS="X86 NVPTX" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-2 php7-3" POSTGRES_TARGETS="postgres11 postgres12" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby24" SANE_BACKENDS="net hp" USERLAND="GNU" VIDEO_CARDS="vga intel i915 i965 fbdev vesa" XFCE_PLUGINS="clock multiload-nandhp power trash" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= sci-visualization/paraview-5.6.1::gentoo was built with the following: USE="boost ffmpeg mysql plugins qt5 sqlite -cg -coprocessing -development -doc -examples -mpi -nvcontrol -offscreen -openmp -python -tcl -test -tk" ABI_X86="(64)" PYTHON_SINGLE_TARGET="python3_6 -python2_7 -python3_5" PYTHON_TARGETS="python2_7 python3_6 -python3_5" FEATURES="sfperms usersync strict network-sandbox multilib-strict unmerge-orphans binpkg-docompress userpriv buildpkg protect-owned sandbox fixlafiles parallel-fetch preserve-libs binpkg-logs userfetch news usersandbox ebuild-locks xattr binpkg-dostrip merge-sync unmerge-logs config-protect-if-modified unknown-features-warn distlocks ipc-sandbox pid-sandbox assume-digests" same here. Same error. Yes, wel'll need a couple of patches for openmp-4 support. (In reply to Matthias Maier from comment #5) > Yes, wel'll need a couple of patches for openmp-4 support. The problem is not the current openmp-4 support patch existing, it's that it blindly assumes >=gcc-9. It's definitely not needed for gcc-8 and I frankly don't know if it's been tested to work with _any_ version of clang. I've just been applying the reverse of that patch locally to get things to work. (In reply to Jouni Kosonen from comment #6) > (In reply to Matthias Maier from comment #5) > > Yes, wel'll need a couple of patches for openmp-4 support. > > The problem is not the current openmp-4 support patch existing, it's that it > blindly assumes >=gcc-9. It's definitely not needed for gcc-8 and I frankly > don't know if it's been tested to work with _any_ version of clang. I've > just been applying the reverse of that patch locally to get things to work. You're absolutely right. I forgot that I already merged some OpenMP 4 patches for Paraview. I will apply the proper upstream patch (that takes care of compatibility). The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=73ae0aa9dc7cfada6451f57398faf2e0adf47d7b commit 73ae0aa9dc7cfada6451f57398faf2e0adf47d7b Author: Matthias Maier <tamiko@gentoo.org> AuthorDate: 2019-08-04 22:47:26 +0000 Commit: Matthias Maier <tamiko@gentoo.org> CommitDate: 2019-08-05 00:07:38 +0000 sci-visualization/paraview: apply proper OpenMP 4 fix Let's apply the proper upstream fix for OpenMP 4. This fixes compilation issues with older gcc. Closes: https://bugs.gentoo.org/689054 Package-Manager: Portage-2.3.70, Repoman-2.3.16 Signed-off-by: Matthias Maier <tamiko@gentoo.org> .../files/paraview-5.6.1-fix_openmp_4.0.patch | 77 ++++++++++++++++++---- 1 file changed, 63 insertions(+), 14 deletions(-) |