Bug 673340 – sci-chemistry/gromacs-2019_rc1 : ninja: build stopped: subcommand failed.

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Toralf Förster 2018-12-17 16:10:44 UTC]

Output written on gromacs.pdf (578 pages, 12358730 bytes).
Transcript written on gromacs.log.
ninja: build stopped: subcommand failed.
 * ERROR: sci-chemistry/gromacs-2019_rc1::gentoo failed (compile phase):
 *   ninja -v -j1 -l0 manual failed
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0-desktop-gnome_20181212-070935

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-8.2.0 *

Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.6
  [3]   python2.7 (fallback)
  [4]   pypy (fallback)
Available Ruby profiles:
  [1]   ruby23 (with Rubygems)
  [2]   ruby24 (with Rubygems)
  [3]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.31.0 *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.9.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpvO sci-chemistry/gromacs
[ebuild  N    ] sci-chemistry/gromacs-2019_rc1  USE="X doc fftw gmxapi hwloc lmfit offensive openmp single-precision threads tng -blas -cuda -double-precision -lapack -mkl -mpi -opencl -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -fma4" PYTHON_TARGETS="python2_7"

[Comment 1 Toralf Förster 2018-12-17 16:10:47 UTC]

Created attachment 557996 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2018-12-17 16:10:50 UTC]

Created attachment 557998 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2018-12-17 16:10:53 UTC]

Created attachment 558000 [details]
environment

[Comment 4 Toralf Förster 2018-12-17 16:10:56 UTC]

Created attachment 558002 [details]
etc.portage.tbz2

[Comment 5 Toralf Förster 2018-12-17 16:10:58 UTC]

Created attachment 558004 [details]
logs.tbz2

[Comment 6 Toralf Förster 2018-12-17 16:11:01 UTC]

Created attachment 558006 [details]
sci-chemistry:gromacs-2019_rc1:20181217-153654.log.bz2

[Comment 7 Toralf Förster 2018-12-17 16:11:04 UTC]

Created attachment 558008 [details]
temp.tbz2

[Comment 8 Larry the Git Cow 2019-02-18 11:55:38 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3815b25d5f2b4606ad17095b3f8591e827f0a876

commit 3815b25d5f2b4606ad17095b3f8591e827f0a876
Author:     Alexey Shvetsov <[e-mail]>
AuthorDate: 2019-02-18 11:54:28 +0000
Commit:     Alexey Shvetsov <[e-mail]>
CommitDate: 2019-02-18 11:55:10 +0000

    sci-chemistry/gromacs: Version bump
    
    Closes: https://bugs.gentoo.org/673350
    Closes: https://bugs.gentoo.org/673340
    Closes: https://bugs.gentoo.org/670846
    Closes: https://bugs.gentoo.org/669460
    Closes: https://bugs.gentoo.org/591952
    Package-Manager: Portage-2.3.61, Repoman-2.3.12
    Signed-off-by: Alexey Shvetsov <[e-mail]>

 sci-chemistry/gromacs/Manifest              |   2 +
 sci-chemistry/gromacs/gromacs-2019.1.ebuild | 307 ++++++++++++++++++++++++++++
 2 files changed, 309 insertions(+)

[Comment 9 Toralf Förster 2019-02-19 19:39:38 UTC]

got at the unstable amd64 chroot image 17.1-desktop-gnome_20190214-164528 this : ninja: build stopped: subcommand failed.

[Comment 10 Toralf Förster 2019-02-19 19:39:40 UTC]

Created attachment 565910 [details]
emerge-info.txt

[Comment 11 Toralf Förster 2019-02-19 19:39:43 UTC]

Created attachment 565912 [details]
emerge-history.txt

[Comment 12 Toralf Förster 2019-02-19 19:39:46 UTC]

Created attachment 565914 [details]
environment

[Comment 13 Toralf Förster 2019-02-19 19:39:48 UTC]

Created attachment 565916 [details]
etc.portage.tbz2

[Comment 14 Toralf Förster 2019-02-19 19:39:51 UTC]

Created attachment 565918 [details]
logs.tbz2

[Comment 15 Toralf Förster 2019-02-19 19:39:54 UTC]

Created attachment 565920 [details]
sci-chemistry:gromacs-2019.1:20190219-184539.log.bz2

[Comment 16 Toralf Förster 2019-02-19 19:39:56 UTC]

Created attachment 565922 [details]
temp.tbz2

[Comment 17 Alexey Shvetsov 2019-06-03 07:06:16 UTC]

Was fixed somewhere around 2019.1