| Summary: | sci-biology/express-1.5.1 : /.../targets.cpp:116:62: error: no matching function for call to ‘Target::cached_effective_length(const boost::shared_ptr<BiasBoss>&) const’ | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | plevine457 |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 582084 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 sci-biology:express-1.5.1:20170223-123807.log |
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Created attachment 464862 [details]
emerge-info.txt
Created attachment 464864 [details]
emerge-history.txt
Created attachment 464866 [details]
environment
Created attachment 464868 [details]
etc.portage.tbz2
Created attachment 464870 [details]
sci-biology:express-1.5.1:20170223-123807.log
commit 61d3ecd7b439ebd0d08613df3dd92b272bb523de Author: Peter Levine <plevine457@gmail.com> Date: Sat Jul 22 21:31:58 2017 -0400 sci-biology/express: Fix building with GCC-6 Bug: https://bugs.gentoo.org/show_bug.cgi?id=610692 |
cd /var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1_build/src && /usr/bin/x86_64-pc-linux-gnu-g++ -I/usr/include/bamtools -DNDEBUG -Werror=terminate -O2 -pipe -march=native -o CMakeFiles/express.dir/targets.cpp.o -c /var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1-src/src/targets.cpp /var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1-src/src/targets.cpp: In member function ‘double Target::sample_likelihood(bool, const std::vector<const Target*>*) const’: /var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1-src/src/targets.cpp:116:62: error: no matching function for call to ‘Target::cached_effective_length(const boost::shared_ptr<BiasBoss>&) const’ double tot_eff_len = cached_effective_length(lib.bias_table); ^ In file included from /var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1-src/src/targets.cpp:10:0: ----------------------------------------------------------------- This is an unstable amd64 chroot image (named desktop-libressl-abi32+64_20170215-185650) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-6.3.0 * llvm-config: 3.9.1 Available Python interpreters, in order of preference: [1] python3.4 [2] python3.5 (fallback) [3] python2.7 (fallback) [4] jython2.7 (fallback) java-config: The following VMs are available for generation-2: 1) IcedTea JDK 7.2.6.8 [icedtea-7] 2) IcedTea JDK 7.2.6.8 [icedtea-bin-7] *) IcedTea JDK 3.3.0 [icedtea-bin-8] Available Java Virtual Machines: [1] icedtea-7 [2] icedtea-bin-7 [3] icedtea-bin-8 system-vm