| Summary: | sci-mathematics/drgeo-1.1.0 : checking dynamic linker characteristics... gcc-config: error: could not run/locate 'x86_64-pc-linux-gnu-gfortran' | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Mathematics related packages <sci-mathematics> |
| Status: | RESOLVED WONTFIX | ||
| Severity: | normal | CC: | pacho |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
config.log
emerge-history.txt environment etc.portage.tbz2 sci-mathematics:drgeo-1.1.0:20161207-072707.log |
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Created attachment 455374 [details]
config.log
Created attachment 455376 [details]
emerge-history.txt
Created attachment 455378 [details]
environment
Created attachment 455380 [details]
etc.portage.tbz2
Created attachment 455382 [details]
sci-mathematics:drgeo-1.1.0:20161207-072707.log
are you still able to reproduce? (In reply to Pacho Ramos from comment #6) yes, eg at 17.0-developer_20180623-161401 did you run revdep-rebuild after updating gcc? (In reply to Pacho Ramos from comment #8) no, burt @preserved-rebuild is run : tinderbox@mr-fox ~ $ head -n 30 run/17.0-developer_20180623-161401/tmp/task.history %emerge -u sys-devel/gcc %SwitchGCC %emerge --unmerge sys-devel/gcc:6.4.0 %emerge -u sys-kernel/vanilla-sources %BuildKernel media-libs/jpeg @system %emerge --resume --skip-first @system %emerge --resume --skip-first @preserved-rebuild %SwitchGCC @preserved-rebuild @world %emerge --resume --skip-first %SwitchGCC @preserved-rebuild @world dev-util/cmake @system dev-python/dominate dev-haskell/distributive dev-perl/Devel-CheckBin media-gfx/frogr net-p2p/torrentinfo dev-ros/smach ... try running revdep-rebuild as preserved-rebuild doesn't catch the breakage caused by gcc-config when switching gcc versions -> bug 459038 (In reply to Pacho Ramos from comment #10) oha, I was told that it should not be necessary to run revdep-rebuild suually. Ok, but it gaves nothing here: tinderbox@mr-fox ~ $ tail -f run/17.0-developer_20180623-161401/tmp/task.log Tue Jun 26 22:06:32 CEST 2018 * This is the new python coded version * Please report any bugs found using it. * The original revdep-rebuild script is installed as revdep-rebuild.sh * Please file bugs at: https://bugs.gentoo.org/ * Collecting system binaries and libraries * Checking dynamic linking consistency * Assign files to packages emerge --oneshot --complete-graph=y net-wireless/unifi:0/5.8 These are the packages that would be merged, in reverse order: Calculating dependencies .... done! !!! All ebuilds that could satisfy "net-wireless/unifi:0/5.8" have been masked. !!! One of the following masked packages is required to complete your request: - net-wireless/unifi-5.8.23::gentoo (masked by: ubiquiti license(s)) A copy of the 'ubiquiti' license is located at '/usr/portage/licenses/ubiquiti'. For more information, see the MASKED PACKAGES section in the emerge man page or refer to the Gentoo Handbook. (In reply to Toralf Förster from comment #11) ui, after unmerging the blocking package I now run into bug 592188 FWIW the GCC switch is at the tinderbox images the very first step after unapcking astage3 and cofniguring it a little bit - so revdep-rebuild should not have an effect here for this bug well... if it shows no broken package, ok. In my case after gcc-config set to gcc7 from gcc6, some packages broke due to soname bump of fortran libs Package removed. |
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... no checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... gcc-config: error: could not run/locate 'x86_64-pc-linux-gnu-gfortran' GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-gnome-libressl-unstable_20161203-191532) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- USE flags in make.conf: USE=" -openssl -gnutls libressl pax_kernel xtpax -cdinstall -oci8 -bindist ssp cdda clang curl custom-cflags dnssec emacs exif fluidsynth -fortran -gif git -graphtft -gstreamer latex mad mdnsresponder-compat modplug -mp4 multimedia ncurses -obj odbc opencv pam png postgres pwquality -qt4 -sasl smpeg source sourceview system-jpeg -szip threads ufed vaapi vdpau video webgl webstart widgets wxwidgets x264 ziffy zip -zlib" ----------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-6.2.0 * llvm-config --version: 3.9.0 Available Java Virtual Machines: [1] icedtea-bin-7 system-vm [2] icedtea-bin-8 [3] jamvm Available Python interpreters, in order of preference: [1] python3.4 [2] python2.7 (fallback) [3] jython2.7 (fallback) java-config: The following VMs are available for generation-2: *) IcedTea JDK 7.2.6.8 [icedtea-bin-7] 2) IcedTea JDK 3.2.0 [icedtea-bin-8] 3) JamVM JDK 2.0.0 [jamvm] ----------------------------------------------------------------- Portage 2.3.3 (python 3.4.5-final-0, default/linux/amd64/13.0/desktop/gnome, gcc-6.2.0, glibc-2.23-r3, 4.8.12-hardened x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.8.12-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3 KiB Mem: 65285560 total, 1896912 free KiB Swap: 67108860 total, 67108860 free Timestamp of repository gentoo: Tue, 06 Dec 2016 21:19:28 +0000 sh bash 4.4_p5-r1 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 app-shells/bash: 4.4_p5-r1::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.24.1_rc4::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo dev-util/cmake: 3.7.1::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.3::gentoo sys-apps/openrc: 0.22.4::gentoo sys-apps/sandbox: 2.10-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.25.1-r1::gentoo, 2.27::gentoo sys-devel/gcc: 6.2.0-r1::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.8::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r3::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 1 tinderbox location: /tmp/tb/data/portage masters: gentoo priority: 2 local location: /usr/local/portage masters: gentoo priority: 99 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/fax /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/spool/fax/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-Werror=terminate -march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr clang cli colord consolekit cracklib crypt cups curl custom-cflags cxx dbus dnssec dri dts dvd dvdr eds emacs emboss encode evo exif fam firefox flac fluidsynth gdbm git glamor gnome gnome-keyring gnome-online-accounts gpm gtk iconv introspection ipv6 jpeg latex lcms ldap libnotify libressl libsecret mad mdnsresponder-compat mmx mmxext mng modplug modules mp3 mpeg multilib multimedia nautilus ncurses nls nptl odbc ogg opencv opengl openmp pam pango pax_kernel pcre pdf png policykit postgres ppds pulseaudio pwquality qt3support readline sdl seccomp session smpeg source sourceview spell sse sse2 ssl ssp startup-notification svg system-jpeg tcpd threads tiff tracker truetype udev udisks ufed unicode upower usb vaapi vdpau video vorbis webgl webstart widgets wxwidgets x264 xattr xcb xml xtpax xv xvid ziffy zip" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="libressl" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" L10N="pl" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON