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Bug 529770

Summary: sci-libs/libmems-1.6_p1: fails to build
Product: Gentoo Linux Reporter: Diego Elio Pettenò (RETIRED) <flameeyes>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: RESOLVED FIXED    
Severity: normal CC: jlec, toralf
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 495124    
Attachments: build.log

Description Diego Elio Pettenò (RETIRED) gentoo-dev 2014-11-19 00:35:01 UTC
https://tinderboxlogs.s3.amazonaws.com/tbamd64.excelsior.flameeyes.eu/sci-libs%3Alibmems-1.6_p1%3A20141111-234036.html

Portage 2.2.14_rc1 (python 2.7.8-final-0, default/linux/amd64/13.0, gcc-4.9.1-asneeded, glibc-2.20, 3.15.5-hardened-r2 x86_64)
=================================================================
System uname: Linux-3.15.5-hardened-r2-x86_64-AMD_Opteron-TM-_Processor_6272-with-gentoo-2.2
KiB Mem:    65962672 total,  16391156 free
KiB Swap:          0 total,         0 free
Timestamp of tree: Unknown
ld ld di GNU (Gentoo 2.24 p1.4) 2.24
distcc 3.1 x86_64-pc-linux-gnu [disabled]
ccache version 3.1.9 [disabled]
app-shells/bash:          4.2_p53
dev-java/java-config:     2.2.0
dev-lang/perl:            5.18.2-r2
dev-lang/python:          2.7.8, 3.2.5-r6, 3.3.5-r1, 3.4.1
dev-util/ccache:          3.1.9
dev-util/cmake:           2.8.12.2-r2
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.13.1
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.4_p6-r1, 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.13.2, 1.14.1
sys-devel/binutils:       2.24-r3
sys-devel/gcc:            4.6.4, 4.7.4, 4.8.3, 4.9.1
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2-r1
sys-devel/make:           4.1
sys-kernel/linux-headers: 3.17 (virtual/os-headers)
sys-libs/glibc:           2.20
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/entropy /opt/openjms/config /usr/share/bufrtables /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/themes/oxygen-gtk/gtk-2.0 /var/bind /var/lib/hsqldb /var/lib/neatx/home /var/spool/torque /var/yp/Makefile"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches"
DISTDIR="/var/cache/portage/distfiles"
FCFLAGS="-O2 -pipe -ggdb -march=native -frecord-gcc-switches"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict test test-fail-continue unknown-features-warn unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe -ggdb -march=native -frecord-gcc-switches"
GENTOO_MIRRORS="http://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ http://gentoo.mirrors.hoobly.com/ http://gentoo.llarian.net/"
LANG="en_US.utf8"
LC_ALL="C"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j24"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/tmp"
PORTDIR="/var/cache/tinderbox/tree"
PORTDIR_OVERLAY=""
SYNC="rsync://excelsior.flameeyes.eu/gentoo-portage"
USE="3dnow 3dnowex acl amd64 berkdb blas bzip2 cli cracklib crypt cxx doc dri emacs ffmpeg fortran freetype iconv icu intl introspection ipv6 lapack mmx modules multilib ncurses nls nptl openmp pam pax_kernel pcre pdf plasma qt3support readline semantic-desktop session snmp sse sse2 sse3 sse4 ssl ssse3 tcmalloc tcpd truetype udev unicode vhosts xft zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Ian Stakenvicius (RETIRED) gentoo-dev 2014-11-21 16:48:56 UTC
Created attachment 390018 [details]
build.log

Autoattach of build.log -- if there are any issues with this file please add bug to tracker bug 527870
Comment 2 Pacho Ramos gentoo-dev 2015-10-01 14:34:29 UTC
*** Bug 538052 has been marked as a duplicate of this bug. ***
Comment 3 Ted Tanberry 2015-12-24 23:33:43 UTC
https://github.com/gentoo/gentoo/pull/524

In addition, I've fixed a QA issue and updated the ebuild to EAPI=6
Comment 4 Justin Lecher (RETIRED) gentoo-dev 2015-12-25 11:48:51 UTC
commit 3091393072e75e598e35a8ff323ddb6f283858ff
Author: Justin Lecher <jlec@gentoo.org>
Date:   Fri Dec 25 12:05:54 2015 +0100

    sci-libs/libmems: Bump to EAPI=6

    Package-Manager: portage-2.2.26
    Signed-off-by: Justin Lecher <jlec@gentoo.org>

    https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3091393072e75e598e35a8ff323ddb6f283858ff

commit ed3b6ab5a4cee65f11f68a91f8abb883fcedc6ef
Author: Justin Lecher <jlec@gentoo.org>
Date:   Fri Dec 25 12:04:12 2015 +0100

    sci-libs/libmems: Drop old

    Package-Manager: portage-2.2.26
    Signed-off-by: Justin Lecher <jlec@gentoo.org>

    https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ed3b6ab5a4cee65f11f68a91f8abb883fcedc6ef

commit 52486aed57b047d4c834cc10d4f70229e5e67891
Author: Justin Lecher <jlec@gentoo.org>
Date:   Fri Dec 25 12:01:28 2015 +0100

    sci-libs/libmems: Fix for format-security

    Package-Manager: portage-2.2.26
    Signed-off-by: Justin Lecher <jlec@gentoo.org>

    https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=52486aed57b047d4c834cc10d4f70229e5e67891

commit 319e280a8e026786b319d48de907e440049f490c
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date:   Fri Dec 25 00:32:17 2015 +0100

    sci-libs/libmems: Version bump, fix bug 529770 and QA issues.

    Package-Manager: portage-2.2.26

    https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=319e280a8e026786b319d48de907e440049f490c