| Summary: | sci-biology/cufflinks-2.2.1 should not depend on <sci-biology/samtools-1.0 | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Michael Schubert <mschu.dev> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | jlec |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: | cufflinks-2.2.1 ebuild for samtools-1.0 | ||
25 Sep 2014; Justin Lecher <jlec@gentoo.org> cufflinks-1.3.0-r1.ebuild: Fix dep due to uncompatible samtools release This kind of crappy solutions happen a lot? +*cufflinks-2.2.1-r1 (02 Oct 2014) + + 02 Oct 2014; Justin Lecher <jlec@gentoo.org> +cufflinks-2.2.1-r1.ebuild, + +files/cufflinks-2.2.1-flags.patch, +files/cufflinks-2.2.1-hts.patch: + Drop debugging flags, fix compatibility with newer samtools, #524252 + |
Created attachment 385922 [details] cufflinks-2.2.1 ebuild for samtools-1.0 When using -lhts for BAM library, cufflinks-2.2.1 works perfectly fine with samtools-1.0 See attached ebuild for an example (at src_compile, ignore src_configure, that's what I came up with without known the CFLAGS patch).