Created attachment 385922 [details] cufflinks-2.2.1 ebuild for samtools-1.0 When using -lhts for BAM library, cufflinks-2.2.1 works perfectly fine with samtools-1.0 See attached ebuild for an example (at src_compile, ignore src_configure, that's what I came up with without known the CFLAGS patch).
25 Sep 2014; Justin Lecher <jlec@gentoo.org> cufflinks-1.3.0-r1.ebuild: Fix dep due to uncompatible samtools release This kind of crappy solutions happen a lot?
+*cufflinks-2.2.1-r1 (02 Oct 2014) + + 02 Oct 2014; Justin Lecher <jlec@gentoo.org> +cufflinks-2.2.1-r1.ebuild, + +files/cufflinks-2.2.1-flags.patch, +files/cufflinks-2.2.1-hts.patch: + Drop debugging flags, fix compatibility with newer samtools, #524252 +