Bug 228183 – sys-cluster/lam-mpi-7.1.4 fails with libtool 2.2

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Evil Compile Person 2008-06-18 22:01:23 UTC]

config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: Unrecognized options: --without-trillium, --with-threads, --without-romio, --with-rsh, --with-fc, --enable-ltdl-convenience

configure: /bin/sh './configure' succeeded for share/libltdl
checking for libtool-supplied linker flags... libtool error!
configure: error: Cannot continue

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sys-cluster/lam-mpi-7.1.4/work/lam-7.1.4/config.log
 *
 * ERROR: sys-cluster/lam-mpi-7.1.4 failed.

config.log has many lines like this:
/var/tmp/portage/sys-cluster/lam-mpi-7.1.4/work/lam-7.1.4/share/libltdl/libtool: line 463: CDPATH: command not found
/var/tmp/portage/sys-cluster/lam-mpi-7.1.4/work/lam-7.1.4/share/libltdl/libtool: line 1148: func_opt_split: command not found
libtool: Version mismatch error.  This is libtool 2.2.4, but the
libtool: definition of this LT_INIT comes from an older release.
libtool: You should recreate aclocal.m4 with macros from libtool 2.2.4
libtool: and run autoconf again.
configure:39634: $? = 0

Portage 2.1.4.4 (default-linux/amd64/2007.0, gcc-4.3.1, glibc-2.8_p20080602-r0, 2.6.25.1 x86_64)
=================================================================
System uname: 2.6.25.1 x86_64 Dual-Core AMD Opteron(tm) Processor 2212 HE
Timestamp of tree: Tue, 17 Jun 2008 20:45:01 +0000
app-shells/bash:     3.2_p39
dev-lang/python:     2.5.2-r4
sys-apps/baselayout: 2.0.0
sys-apps/openrc:     0.2.5
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.62
sys-devel/automake:  1.10.1-r1
sys-devel/binutils:  2.18-r1
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   2.2.4
virtual/os-headers:  2.6.25-r4
ACCEPT_KEYWORDS="amd64 ~amd64"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/terminfo /etc/udev/rules.d"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="buildpkg distlocks metadata-transfer sandbox sfperms strict unmerge-orphans userfetch"
GENTOO_MIRRORS="http://216.165.129.134/gentoo http://gentoo.mirrors.tds.net/gentoo http://gentoo.osuosl.org/"
LANG="en_US"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://208.71.112.51/gentoo-portage"
USE="X acl amd64 berkdb cli cracklib crypt cups dri fortran gcj gdbm gpm iconv ipv6 isdnlog midi mmx mudflap ncurses nls nptl nptlonly objc openmp pam pcre perl pppd python readline reflection session spl sse sse2 ssl tcpd unicode xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU" VIDEO_CARDS="vga"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LDFLAGS, LINGUAS, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY

[Comment 1 Justin Bronder (RETIRED) 2008-06-19 01:01:25 UTC]

Be a little bit before I can mess with this as I guess I'll need a chroot.  I think I just need to remove the included libltdl stuff and use the system versions instead, but we'll see :)

Thanks for reporting and if you have better ideas/patches, let me know.

[Comment 2 Boian Berberov 2008-08-05 17:34:10 UTC]

Created attachment 162280 [details, diff]
files/lam-mpi-7.1.4-libtool-compatibility.patch

[Comment 3 Boian Berberov 2008-08-05 17:40:42 UTC]

Created attachment 162281 [details, diff]
lam-mpi-7.1.4.ebuild.patch

With these changes it compiles for me.  Unfortunately, I cannot test it.  Hope this helps.

[Comment 4 Justin Bronder (RETIRED) 2008-11-24 21:39:11 UTC]

*** Bug 248415 has been marked as a duplicate of this bug. ***

[Comment 5 Justin Bronder (RETIRED) 2009-01-25 18:21:43 UTC]

(In reply to comment #3)
> Created an attachment (id=162281) [edit]
> lam-mpi-7.1.4.ebuild.patch
> 
> With these changes it compiles for me.  Unfortunately, I cannot test it.  Hope
> this helps.
> 

Sadly that makes lam think it needs 'libtool: link:' in the LDFLAGS.

mejis lam-7.1.4 # mpicc --showme
x86_64-pc-linux-gnu-gcc -pthread libtool: link: -pthread -L/usr/lib64 -llamf77mpi -lmpi -llam -lutil -ldl

Haven't figure out how to strip that junk out yet.

[Comment 6 Justin Bronder (RETIRED) 2009-01-25 21:02:26 UTC]

lam-mpi-7.1.4-r1 appears to be working.  Thanks for the patch that got me started Boian!