sci-biology:iedera-1.05-r2:20230903-205739.log

sci-biology:iedera-1.05-r2:20230903-205739.log (text/plain), 6.28 KB, created by Toralf Förster on 2023-09-04 17:49:17 UTC

 * Package:    sci-biology/iedera-1.05-r2:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking iedera-1.05.tar.gz to /var/tmp/portage/sci-biology/iedera-1.05-r2/work
>>> Source unpacked in /var/tmp/portage/sci-biology/iedera-1.05-r2/work
>>> Preparing source in /var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05 ...
 * Applying iedera-1.05-fix-buildsystem.patch ...
 [ ok ]
 * Running eautoreconf in '/var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05' ...
 * Running 'aclocal --system-acdir=/var/tmp/portage/sci-biology/iedera-1.05-r2/temp/aclocal' ...
 [ ok ]
 * Moving configure.in to configure.ac (bug #426262)
 * Running 'autoconf --force' ...
 [ ok ]
 * Running 'automake --add-missing --copy --force-missing' ...
 [ ok ]
 * Running elibtoolize in: iedera-1.05/
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05 ...
 * econf: updating iedera-1.05/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating iedera-1.05/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datarootdir=/usr/share --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/iedera-1.05-r2 --htmldir=/usr/share/doc/iedera-1.05-r2/html --libdir=/usr/lib64
checking for a BSD-compatible install... /usr/lib/portage/python3.11/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++ accepts -g... yes
checking for clang++ option to enable C++11 features... none needed
checking whether make supports the include directive... yes (GNU style)
checking dependency style of clang++... none
checking for x86_64-pc-linux-gnu-gcc... clang
checking whether the compiler supports GNU C... yes
checking whether clang accepts -g... yes
checking for clang option to enable C11 features... none needed
checking whether clang understands -c and -o together... yes
checking dependency style of clang... none
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05 ...
make -j5 
clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.     -O2 -pipe -march=native -fno-diagnostics-color -c -o main.o main.cc
clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.     -O2 -pipe -march=native -fno-diagnostics-color -c -o automaton.o automaton.cc
clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.     -O2 -pipe -march=native -fno-diagnostics-color -c -o seed.o seed.cc
clang++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"iedera\" -DVERSION=\"1.05\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.     -O2 -pipe -march=native -fno-diagnostics-color -c -o macro.o macro.cc
In file included from automaton.cc:4:
./automaton.h:14:10: fatal error: 'ext/slist' file not found
#include <ext/slist>
         ^~~~~~~~~~~
1 error generated.
make: *** [Makefile:401: automaton.o] Error 1
make: *** Waiting for unfinished jobs....
In file included from main.cc:77:
./automaton.h:14:10: fatal error: 'ext/slist' file not found
#include <ext/slist>
         ^~~~~~~~~~~
1 error generated.
make: *** [Makefile:401: main.o] Error 1
 * ERROR: sci-biology/iedera-1.05-r2::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/iedera-1.05-r2::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/iedera-1.05-r2::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:iedera-1.05-r2:20230903-205739.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/iedera-1.05-r2/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/iedera-1.05-r2/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05'
 * S: '/var/tmp/portage/sci-biology/iedera-1.05-r2/work/iedera-1.05'