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Gentoo's Bugzilla – Attachment 865792 Details for
Bug 910021
sci-chemistry/pymol: needs to use PEP517 build (DistutilsNonPEP517Build)
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pymol-2.5.0-r4.ebuild
pymol-2.5.0-r4.ebuild (text/plain), 2.76 KB, created by
Pacho Ramos
on 2023-07-19 09:05:48 UTC
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Description:
pymol-2.5.0-r4.ebuild
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Creator:
Pacho Ramos
Created:
2023-07-19 09:05:48 UTC
Size:
2.76 KB
patch
obsolete
># Copyright 1999-2023 Gentoo Authors ># Distributed under the terms of the GNU General Public License v2 > >EAPI=8 > >PYTHON_COMPAT=( python3_{9..11} ) >DISTUTILS_USE_PEP517="setuptools" >DISTUTILS_EXT=1 > >inherit desktop flag-o-matic xdg distutils-r1 > >DESCRIPTION="A Python-extensible molecular graphics system" >HOMEPAGE="https://www.pymol.org/" >SRC_URI=" > https://dev.gentoo.org/~pacho/${PN}/${PN}-1.8.4.0.png.xz > https://github.com/schrodinger/pymol-open-source/archive/v${PV}.tar.gz -> ${P}.tar.gz > " >LICENSE="BitstreamVera BSD freedist HPND OFL public-domain UoI-NCSA" #844991 >SLOT="0" >KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" >IUSE="+netcdf web" > >DEPEND=" > dev-cpp/msgpack-cxx > dev-libs/mmtf-cpp > dev-python/pyopengl[${PYTHON_USEDEP}] > dev-python/PyQt5[opengl,${PYTHON_USEDEP}] > dev-python/numpy[${PYTHON_USEDEP}] > dev-python/pmw[${PYTHON_USEDEP}] > media-libs/freetype:2 > media-libs/glew:0= > media-libs/glm > media-libs/libpng:0= > media-video/mpeg-tools > sys-libs/zlib > netcdf? ( sci-libs/netcdf:0= ) >" >RDEPEND="${DEPEND} > sci-chemistry/chemical-mime-data >" > >S="${WORKDIR}"/${PN}-open-source-${PV} > >PATCHES=( > "${FILESDIR}/${PN}-2.5.0-format-security.patch" >) > >python_prepare_all() { > sed \ > -e "s:\"/usr:\"${EPREFIX}/usr:g" \ > -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ > -i setup.py || die > > sed \ > -e "s:/opt/local:${EPREFIX}/usr:g" \ > -e '/ext_comp_args/s:\[.*\]:[]:g' \ > -i setup.py || die > sed \ > -e "s:\['msgpackc'\]:\['msgpack'\]:g" \ > -i setup.py || die > > append-cxxflags -std=c++0x > > distutils-r1_python_prepare_all >} > >python_configure_all() { > use !netcdf && DISTUTILS_ARGS=( --no-vmd-plugins ) >} > >python_install() { > distutils-r1_python_install \ > --pymol-path="${EPREFIX}/usr/share/pymol" > > sed \ > -e '1i#!/usr/bin/env python' \ > "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die > python_doscript "${T}"/${PN} >} > >python_install_all() { > distutils-r1_python_install_all > > # Move data to correct location > dodir /usr/share/pymol > mv "${D}/$(python_get_sitedir)"/pymol/pymol_path/* "${D}/usr/share/pymol" || die > > # These environment variables should not go in the wrapper script, or else > # it will be impossible to use the PyMOL libraries from Python. > cat >> "${T}"/20pymol <<- EOF || die > PYMOL_PATH="${EPREFIX}/usr/share/pymol" > PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" > PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" > EOF > > doenvd "${T}"/20pymol > > newicon "${WORKDIR}"/${PN}-1.8.4.0.png ${PN}.png > make_desktop_entry "${PN} %u" PyMol ${PN} \ > "Graphics;Education;Science;Chemistry;" \ > "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" > > if ! use web; then > rm -rf "${D}/$(python_get_sitedir)/web" || die > fi > > rm -f "${ED}"/usr/share/${PN}/LICENSE || die >}
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bug 910021
: 865792 |
865793