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Gentoo's Bugzilla – Attachment 814237 Details for
Bug 873025
sci-biology/augustus-3.4.0-r2 fails tests (MUSL)
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build.log
build.log (text/plain), 831.20 KB, created by
Agostino Sarubbo
on 2022-09-26 09:21:49 UTC
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hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2022-09-26 09:21:49 UTC
Size:
831.20 KB
patch
obsolete
> * Package: sci-biology/augustus-3.4.0-r2:0 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_musl kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/de9c67a261a11b7de9990ba4120c5018efef7e87 (Sat Sep 24 15:46:48 UTC 2022) >@@@@@ END @@@@@ > > > >################## ># emerge --info: # >################## >Portage 3.0.37 (python 3.10.7-final-0, default/linux/amd64/17.0/musl/hardened, gcc-12.2.0, musl-1.2.3-r4, 5.10.133-gentoo x86_64) >================================================================= >System uname: Linux-5.10.133-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-libc >KiB Mem: 264024340 total, 60708032 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Sat, 24 Sep 2022 15:46:48 +0000 >sh bash 5.1_p16-r2 >ld GNU ld (Gentoo 2.39 p4) 2.39.0 >app-misc/pax-utils: 1.3.5::gentoo >app-shells/bash: 5.1_p16-r2::gentoo >dev-lang/perl: 5.36.0::gentoo >dev-lang/python: 3.8.14::gentoo, 3.9.14::gentoo, 3.10.7::gentoo, 3.11.0_rc2::gentoo >dev-util/cmake: 3.24.2::gentoo >dev-util/meson: 0.63.2-r1::gentoo >sys-apps/baselayout: 2.9::gentoo >sys-apps/openrc: 0.45.2::gentoo >sys-apps/sandbox: 2.29::gentoo >sys-devel/autoconf: 2.71-r4::gentoo >sys-devel/automake: 1.16.5::gentoo >sys-devel/binutils: 2.39-r2::gentoo >sys-devel/binutils-config: 5.4.1::gentoo >sys-devel/gcc: 12.2.0::gentoo >sys-devel/gcc-config: 2.6::gentoo >sys-devel/libtool: 2.4.7::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.19::gentoo (virtual/os-headers) >sys-libs/musl: 1.2.3-r4::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-max-age: 24 > sync-rsync-verify-metamanifest: yes > sync-rsync-extra-opts: > sync-rsync-verify-jobs: 1 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* Artistic" >CBUILD="x86_64-gentoo-linux-musl" >CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >CHOST="x86_64-gentoo-linux-musl" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >DISTDIR="/var/tmp/portage/sci-biology/augustus-3.4.0-r2/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" >INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j4" >PKGDIR="/root/tbci/binpkg" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 cli crypt dri elogind fortran hardened iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" USERLAND="GNU" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > > >############################## ># emerge history (qlop -mv): # >############################## >2022-09-24T16:57:33 >>> sci-libs/htslib-1.15.1 >2022-09-24T16:57:40 >>> app-arch/lz4-1.9.4 >2022-09-24T16:57:30 >>> sci-libs/suitesparseconfig-5.4.0 >2022-09-24T16:57:35 >>> virtual/fortran-0-r1 >2022-09-24T16:57:31 >>> dev-util/b2-4.9.2 >2022-09-24T16:57:38 >>> sci-libs/metis-5.1.0-r5 >2022-09-24T16:57:36 >>> sci-libs/gsl-2.7.1-r1 >2022-09-24T16:57:42 >>> sci-biology/bamtools-2.5.2 >2022-09-24T16:58:08 >>> dev-db/mysql-connector-c-8.0.27-r1 >2022-09-24T16:58:12 >>> sci-libs/colamd-2.9.6 >2022-09-24T16:58:19 >>> sci-libs/cxsparse-3.2.0 >2022-09-24T16:58:15 >>> sci-libs/ccolamd-2.9.6 >2022-09-24T16:58:44 >>> dev-libs/boost-1.80.0 >2022-09-24T16:58:45 >>> sci-libs/camd-2.4.6-r1 >2022-09-24T16:58:14 >>> sci-libs/btf-1.2.6 >2022-09-24T16:58:03 >>> sci-biology/samtools-1.15.1 >2022-09-24T16:58:48 >>> sci-libs/lapack-3.10.1 >2022-09-24T16:59:02 >>> dev-db/mysql++-3.3.0 >2022-09-24T16:58:21 >>> sci-libs/ldl-2.2.6 >2022-09-24T16:58:51 >>> sci-libs/amd-2.4.6-r1 >2022-09-24T16:59:10 >>> sci-mathematics/lpsolve-5.5.2.0-r1 >2022-09-24T17:00:38 >>> virtual/blas-3.8 >2022-09-24T17:00:35 >>> virtual/lapack-3.10 >2022-09-24T17:00:48 >>> sci-libs/klu-1.3.9-r2 >2022-09-24T17:01:04 >>> sci-libs/cholmod-3.0.13 >2022-09-24T17:02:03 >>> sci-libs/umfpack-5.7.9 >2022-09-24T17:02:02 >>> sci-libs/spqr-2.0.9-r2 >2022-09-24T17:02:50 >>> sci-libs/suitesparse-5.4.0 > > > > >####################################### ># installed packages (qlist -ICvUSS): # >####################################### >acct-group/audio-0-r1:0 >acct-group/cdrom-0-r1:0 >acct-group/dialout-0-r1:0 >acct-group/disk-0-r1:0 >acct-group/input-0-r1:0 >acct-group/kmem-0-r1:0 >acct-group/kvm-0-r1:0 >acct-group/lp-0-r1:0 >acct-group/man-0-r1:0 >acct-group/messagebus-0-r1:0 >acct-group/portage-0:0 >acct-group/render-0-r1:0 >acct-group/sgx-0:0 >acct-group/sshd-0-r1:0 >acct-group/tape-0-r1:0 >acct-group/tty-0-r1:0 >acct-group/video-0-r1:0 >acct-user/man-1-r1:0 >acct-user/messagebus-0-r1:0 >acct-user/portage-0:0 >acct-user/sshd-0-r1:0 >app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax >app-admin/perl-cleaner-2.30:0 >app-arch/bzip2-1.0.8-r3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig >app-arch/gzip-1.12-r2:0 -pic -static -verify-sig >app-arch/libarchive-3.6.1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd >app-arch/lz4-1.9.4:0/r132 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >app-arch/tar-1.34:0 acl -minimal nls -selinux -verify-sig xattr >app-arch/unzip-6.0_p27:0 bzip2 -natspec unicode >app-arch/xz-utils-5.2.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs -verify-sig >app-arch/zstd-1.5.2-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 split-usr -static-libs threads >app-crypt/gnupg-2.3.7-r1:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server >app-crypt/gpgme-1.18.0-r1:1/11.6.15.1 -common-lisp cxx -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs -test -verify-sig >app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs >app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >app-crypt/pinentry-1.2.1:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5 -verify-sig >app-crypt/rhash-1.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs >app-editors/nano-6.4:0 -debug -justify -magic -minimal ncurses nls spell split-usr -static unicode >app-eselect/eselect-fontconfig-20220403:0 >app-eselect/eselect-iptables-20220320:0 >app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 >app-eselect/eselect-pinentry-0.7.2:0 >app-misc/c_rehash-1.7-r1:0 >app-misc/ca-certificates-20211016.3.83:0 -cacert >app-misc/editor-wrapper-4-r1:0 >app-misc/mime-types-2.1.53:0 -nginx >app-misc/pax-utils-1.3.5:0 -caps man -python python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9 seccomp -test >app-misc/tmux-3.3a-r1:0 -debug -selinux -systemd -utempter -vim-syntax >app-portage/eix-0.36.5:0 -debug -doc nls -sqlite >app-portage/elt-patches-20220831:0 >app-portage/gemato-17.0:0 gpg -pretty-log -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test -tools >app-portage/gentoolkit-0.6.1-r3:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >app-portage/portage-utils-0.94.3:0 openmp qmanifest qtegrity -static >app-shells/bash-5.1_p16-r2:0 -afs -bashlogger -examples -mem-scramble net nls -plugins readline -verify-sig >app-shells/bash-completion-2.11:0 eselect -test >app-shells/gentoo-bashcomp-20190211-r1:0 >app-shells/push-3.4:0 >app-shells/quoter-4.2:0 >app-text/ansifilter-2.18:0 -qt5 >app-text/build-docbook-catalog-2.3-r1:0 >app-text/docbook-xml-dtd-4.5-r2:4.5 >app-text/docbook-xml-dtd-4.4-r3:4.4 >app-text/docbook-xml-dtd-4.2-r3:4.2 >app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 >app-text/docbook-xsl-stylesheets-1.79.1-r3:0 -ruby >app-text/manpager-1:0 >app-text/sgml-common-0.6.3-r7:0 >app-text/xmlto-0.0.28-r9:0 -latex text >dev-db/mysql++-3.3.0:0/3 -doc >dev-db/mysql-connector-c-8.0.27-r1:0/21 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ldap -static-libs >dev-db/sqlite-3.39.3:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools >dev-lang/perl-5.36.0:0/5.36 -berkdb -debug -doc -gdbm ithreads -minimal -quadmath >dev-lang/python-3.11.0_rc2:3.11 -bluetooth -build ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig >dev-lang/python-3.10.7:3.10 -bluetooth -build ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig xml >dev-lang/python-3.9.14:3.9 -bluetooth -build ensurepip -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig xml >dev-lang/python-3.8.14:3.8 -bluetooth -build ensurepip -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml >dev-lang/python-exec-2.4.9:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test >dev-lang/python-exec-conf-2.4.6:2 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >dev-lang/tcl-8.6.12:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads >dev-libs/boehm-gc-8.2.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads >dev-libs/boost-1.80.0:0/1.80.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -context -debug -doc -icu -lzma -mpi nls -numpy -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -tools zlib -zstd >dev-libs/elfutils-0.187-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test utils -valgrind -verify-sig -zstd >dev-libs/expat-2.4.9:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs unicode >dev-libs/glib-2.74.0:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus -debug elf -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr >dev-libs/gmp-6.2.1-r2:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cxx -doc -pic -static-libs >dev-libs/gobject-introspection-1.74.0:0 -doctool -gtk-doc python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9 -test >dev-libs/gobject-introspection-common-1.74.0:0 >dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/jsoncpp-1.9.5:0/25 -doc -test >dev-libs/libassuan-2.5.5:0 >dev-libs/libatomic_ops-7.6.14:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >dev-libs/libbsd-0.11.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig >dev-libs/libevent-2.1.12:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime -debug -malloc-replacement ssl -static-libs -test threads -verbose-debug >dev-libs/libffi-3.4.3:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -exec-static-trampoline -experimental-loong -pax-kernel -static-libs -test >dev-libs/libgcrypt-1.10.1-r2:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc -static-libs -verify-sig >dev-libs/libgpg-error-1.45-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs -test >dev-libs/libksba-1.6.1:0 -static-libs -verify-sig >dev-libs/libltdl-2.4.7:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/libpcre2-10.40:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode -verify-sig zlib >dev-libs/libpipeline-1.5.6:0 -test >dev-libs/libtasn1-4.19.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -valgrind -verify-sig >dev-libs/libunistring-1.0:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs >dev-libs/libuv-1.44.2-r1:0/1 >dev-libs/libxml2-2.10.2:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples ftp -icu -lzma python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 readline -static-libs -test >dev-libs/libxslt-1.1.37:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt -debug -examples -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 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>sys-apps/attr-2.5.1-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls split-usr -static-libs >sys-apps/baselayout-2.9:0 -build split-usr >sys-apps/coreutils-9.1-r1:0 acl -caps -gmp -hostname -kill -multicall nls -selinux split-usr -static -test -vanilla -verify-sig xattr >sys-apps/dbus-1.14.0-r6:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc elogind -selinux -static-libs -systemd -test -test >sys-apps/debianutils-5.7:0 installkernel -static >sys-apps/diffutils-3.8:0 nls -static -verify-sig >sys-apps/elfix-0.9.5:0 -ptpax xtpax >sys-apps/file-5.43:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -seccomp -static-libs -verify-sig zlib >sys-apps/findutils-4.9.0:0 nls 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native-extensions -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 rsync-verify -selinux -test xattr >sys-apps/sandbox-2.29:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nnp >sys-apps/sed-4.8:0 acl nls -selinux -static -verify-sig >sys-apps/shadow-4.12.3:0/4 acl -audit -bcrypt -cracklib nls pam -selinux -skey split-usr -su -verify-sig xattr >sys-apps/systemd-utils-251.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -boot kmod -selinux split-usr -split-usr -sysusers -test tmpfiles udev >sys-apps/sysvinit-3.05:0 -ibm -nls -selinux -static -verify-sig >sys-apps/texinfo-6.8:0 nls standalone -static >sys-apps/util-linux-2.38.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses nls pam -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 readline -rtas -selinux -slang split-usr -static-libs su suid -systemd -test -tty-helpers -udev unicode -verify-sig >sys-apps/which-2.21:0 >sys-auth/elogind-246.10-r2:0 acl -audit cgroup-hybrid -debug -doc pam -policykit -selinux -test >sys-auth/pambase-20220214:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -systemd -yescrypt >sys-auth/passwdqc-2.0.2-r1:0 >sys-devel/autoconf-2.71-r4:2.71 -emacs >sys-devel/autoconf-archive-2022.09.03:0 >sys-devel/autoconf-wrapper-20220130:0 >sys-devel/automake-1.16.5:1.16 -test >sys-devel/automake-wrapper-11-r1:0 >sys-devel/binutils-2.39-r2:2.39 -cet -default-gold -doc -gold -gprofng -multitarget nls -pgo plugins -static-libs -test -vanilla >sys-devel/binutils-config-5.4.1:0 native-symlinks >sys-devel/bison-3.8.2:0 -examples nls -static -test -verify-sig >sys-devel/flex-2.6.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test >sys-devel/gcc-12.2.0:12 -ada -cet -custom-cflags cxx -d -debug -doc -fixed-point fortran -go graphite hardened -jit -libssp lto -multilib -nls nptl -objc -objc++ -objc-gc openmp -pch -pgo pie -sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd >sys-devel/gcc-config-2.6:0 cc-wrappers native-symlinks >sys-devel/gettext-0.21-r4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -cvs cxx -doc -emacs -git -java -java ncurses -nls openmp -static-libs -verify-sig >sys-devel/gnuconfig-20220508:0 >sys-devel/libtool-2.4.7:2 -vanilla >sys-devel/m4-1.4.19:0 -examples nls -verify-sig >sys-devel/make-4.3:0 -guile nls -static -verify-sig >sys-devel/patch-2.7.6-r4:0 -static -test -verify-sig xattr >sys-fs/e2fsprogs-1.46.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -lto -nls split-usr -static-libs -test threads tools >sys-fs/udev-init-scripts-35:0 >sys-kernel/installkernel-gentoo-5:0 -grub >sys-kernel/linux-headers-5.19:0 -headers-only >sys-libs/argp-standalone-1.5.0:0 -static-libs >sys-libs/binutils-libs-2.39-r1:0/2.39 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cet -multitarget nls -static-libs >sys-libs/fts-standalone-1.2.7:0 -static-libs >sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -verify-sig >sys-libs/libcap-2.65:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools >sys-libs/libseccomp-2.5.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -experimental-loong -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs -test >sys-libs/libxcrypt-4.4.28-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 compat split-usr -static-libs system -test >sys-libs/musl-1.2.3-r4:0 -crypt -headers-only -verify-sig >sys-libs/ncurses-6.3_p20220917:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx -debug -doc -gpm -minimal -profile split-usr -stack-realign -static-libs -test tinfo -trace -verify-sig >sys-libs/obstack-standalone-1.2.3:0 -static-libs >sys-libs/pam-1.5.2-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug -filecaps -nis -selinux split-usr >sys-libs/readline-8.1_p2-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig >sys-libs/zlib-1.2.12-r3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig >sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode >sys-process/psmisc-23.4-r1:0 -X ipv6 nls -selinux >virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/awk-1:0 >virtual/blas-3.8:0 -eselect-ldso >virtual/dev-manager-0-r2:0 >virtual/editor-0-r3:0 >virtual/fortran-0-r1:0 openmp >virtual/lapack-3.10:0 -eselect-ldso >virtual/libc-1-r1:0 >virtual/libcrypt-2-r1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/libelf-3-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libudev-232-r7:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd >virtual/man-0-r4:0 >virtual/os-headers-0-r2:0 >virtual/package-manager-1:0 >virtual/pager-0-r1:0 >virtual/perl-Carp-1.520.0-r2:0 >virtual/perl-Compress-Raw-Bzip2-2.103.0-r2:0 >virtual/perl-Compress-Raw-Zlib-2.202.0:0 >virtual/perl-CPAN-2.330.0:0 >virtual/perl-CPAN-Meta-2.150.10-r6:0 >virtual/perl-CPAN-Meta-Requirements-2.140.0-r8:0 >virtual/perl-CPAN-Meta-YAML-0.18.0-r8:0 >virtual/perl-Data-Dumper-2.184.0:0 >virtual/perl-Digest-MD5-2.580.0-r1:0 >virtual/perl-Encode-3.170.0:0 >virtual/perl-Exporter-5.770.0:0 >virtual/perl-ExtUtils-CBuilder-0.280.236-r1:0 >virtual/perl-ExtUtils-Install-2.200.0-r1:0 >virtual/perl-ExtUtils-MakeMaker-7.640.0:0 >virtual/perl-ExtUtils-Manifest-1.730.0-r1:0 >virtual/perl-ExtUtils-ParseXS-3.450.0:0 >virtual/perl-File-Path-2.180.0-r1:0 >virtual/perl-File-Spec-3.840.0:0 >virtual/perl-File-Temp-0.231.100:0 >virtual/perl-Getopt-Long-2.520.0-r1:0 >virtual/perl-IO-1.500.0:0 >virtual/perl-IO-Compress-2.106.0:0 >virtual/perl-IO-Socket-IP-0.410.0-r1:0 >virtual/perl-JSON-PP-4.70.0:0 >virtual/perl-libnet-3.140.0:0 ssl >virtual/perl-MIME-Base64-3.160.0-r1:0 >virtual/perl-Module-Metadata-1.0.37-r2:0 >virtual/perl-parent-0.238.0-r2:0 >virtual/perl-Parse-CPAN-Meta-2.150.10-r6:0 >virtual/perl-Perl-OSType-1.10.0-r6:0 >virtual/perl-podlators-4.140.0-r3:0 >virtual/perl-Scalar-List-Utils-1.620.0:0 >virtual/perl-Test-Harness-3.440.0:0 >virtual/perl-Text-ParseWords-3.310.0:0 >virtual/perl-Time-Local-1.300.0-r1:0 >virtual/perl-version-0.992.900:0 >virtual/perl-XSLoader-0.310.0:0 >virtual/pkgconfig-2-r1:0 >virtual/service-manager-1:0 >virtual/ssh-0-r1:0 -minimal >virtual/tmpfiles-0-r3:0 >virtual/ttf-fonts-1-r2:0 >virtual/udev-217-r5:0 >virtual/w3m-1:0 >virtual/yacc-0:0 >www-client/pybugz-0.13-r2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >www-client/w3m-0.5.3_p20220429-r1:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface >x11-apps/xprop-1.2.5:0 >x11-apps/xset-1.2.4-r1:0 >x11-base/xcb-proto-1.15.2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 >x11-base/xorg-proto-2022.2:0 -test >x11-libs/cairo-1.16.0-r5:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug -gles2-only glib -opengl -static-libs svg -utils -valgrind >x11-libs/libICE-1.0.10-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 ipv6 >x11-libs/libSM-1.2.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 uuid >x11-libs/libX11-1.8.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/libXau-1.0.10:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libxcb-1.15-r1:0/1.12 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -doc -selinux -test xkb >x11-libs/libXdmcp-1.1.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXext-1.3.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc >x11-libs/libXmu-1.1.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 >x11-libs/libXt-1.2.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test >x11-libs/pixman-0.40.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs -test >x11-libs/xtrans-1.4.0:0 -doc >x11-misc/compose-tables-1.8.1:0 >x11-misc/shared-mime-info-2.2:0 -test >x11-misc/xdg-utils-1.1.3_p20210805:0 -dbus -doc -gnome > > >####################### ># build.log # >####################### >>>> Unpacking source... >>>> Unpacking augustus-3.4.0.tar.gz to /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work >>>> Source unpacked in /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work >>>> Preparing source in /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0 ... >make -j4 LINK.cc=x86_64-gentoo-linux-musl-g++ >mkdir -p bin >cd src && make >make[1]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/src' >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o genbank.o genbank.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o properties.o properties.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_profile.o pp_profile.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_hitseq.o pp_hitseq.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_scoring.o pp_scoring.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o statemodel.o statemodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o namgene.o namgene.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o types.o types.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o gene.o gene.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o evaluation.o evaluation.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o motif.o motif.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o geneticcode.o geneticcode.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o hints.o hints.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o extrinsicinfo.o extrinsicinfo.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o projectio.o projectio.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >hints.cc: In function 'std::istream& operator>>(std::istream&, Feature&)': >hints.cc:82:16: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 1014 bytes from a string of length 1023 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] > 82 | strncpy(copybuff, buff, 1014); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o intronmodel.o intronmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o exonmodel.o exonmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o igenicmodel.o igenicmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o utrmodel.o utrmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o merkmal.o merkmal.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o vitmatrix.o vitmatrix.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o lldouble.o lldouble.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o mea.o mea.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o graph.o graph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o meaPath.o meaPath.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o exoncand.o exoncand.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o randseqaccess.o randseqaccess.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o fasta.o fasta.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o ncmodel.o ncmodel.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o parser/parse.o parser/parse.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o scanner/lex.o scanner/lex.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o genomicMSA.o genomicMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o geneMSA.o geneMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o contTimeMC.o contTimeMC.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o codonevo.o codonevo.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o compgenepred.o compgenepred.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o phylotree.o phylotree.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o orthograph.o orthograph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o orthoexon.o orthoexon.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o alignment.o alignment.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o speciesgraph.o speciesgraph.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o codonMSA.o codonMSA.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o train_logReg_param.o train_logReg_param.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o tokenizer.o tokenizer.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o sqliteDB.o sqliteDB.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o commontrain.o commontrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o igenictrain.o igenictrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o introntrain.o introntrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o exontrain.o exontrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o utrtrain.o utrtrain.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o dummy.o dummy.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o prepareAlign pp_prepare_align.cc >x86_64-gentoo-linux-musl-g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ >x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o pp_simScore pp_simscore.cc fasta.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 >x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o load2db load2db.cc fasta.o hints.o types.o properties.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 >cp prepareAlign ../bin/ >x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o getSeq getSeq.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 >x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o load2sqlitedb load2sqlitedb.cc fasta.o hints.o types.o properties.o lldouble.o sqliteDB.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 >cp getSeq ../bin/ >echo "-Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE" > cxxflags >x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 >cp load2db ../bin/ >x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 >cp pp_simScore ../bin/ >x86_64-gentoo-linux-musl-g++ -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++ -lboost_iostreams -lgsl -lgslcblas -llpsolve55 -lcolamd -ldl -lboost_serialization -lmysqlclient -lmysqlpp -lsqlite3 >cp load2sqlitedb ../bin/ >cp fastBlockSearch ../bin/ >cp etraining ../bin/ >cp augustus ../bin/ >make[1]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/src' >cd auxprogs && make >make[1]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs' >cd aln2wig; make; >make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/aln2wig' >x86_64-gentoo-linux-musl-gcc -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c aln2wig.c >aln2wig.c: In function 'main': >aln2wig.c:454:41: warning: 'strncpy' output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] > 454 | strncpy(completedChromosomes[completedChromosomeCount-1],oldname,TOKEN_SIZE-1); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >aln2wig.c:460:41: warning: 'strncpy' output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] > 460 | strncpy(oldname,name,TOKEN_SIZE-1); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >aln2wig.c:327:41: warning: 'strncpy' output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] > 327 | strncpy(completedChromosomes[completedChromosomeCount-1],oldname,TOKEN_SIZE-1); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >aln2wig.c:334:41: warning: 'strncpy' output may be truncated copying 4095 bytes from a string of length 4095 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] > 334 | strncpy(oldname,name,TOKEN_SIZE-1); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-gentoo-linux-musl-gcc -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o aln2wig aln2wig.o >mkdir -p ../../bin >cp aln2wig ../../bin >make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/aln2wig' >cd bam2hints; make; >make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/bam2hints' >x86_64-gentoo-linux-musl-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -O2 -c bam2hints.cc -o bam2hints.o -I/usr/include/bamtools >In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/list:63, > from bam2hints.cc:9: >In member function 'std::_List_iterator< <template-parameter-1-1> >::_Self std::_List_iterator< <template-parameter-1-1> >::operator++(int) [with _Tp = hint_t]', > inlined from 'void printHints(FILE*, const char*)' at bam2hints.cc:326:121: >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_list.h:297:28: warning: pointer used after 'void operator delete(void*, std::size_t)' [-Wuse-after-free[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wuse-after-free]] > 297 | _M_node = _M_node->_M_next; > | ~~~~~~~~~^~~~~~~ >In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/x86_64-gentoo-linux-musl/bits/c++allocator.h:33, > from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/allocator.h:46, > from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/list:61: >In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node<hint_t>]', > inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node<hint_t>]' at /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/alloc_traits.h:496:23, > inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = hint_t; _Alloc = std::allocator<hint_t>]' at /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_list.h:522:39, > inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = hint_t; _Alloc = std::allocator<hint_t>]' at /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_list.h:2024:13, > inlined from 'std::__cxx11::list<_Tp, _Alloc>::iterator std::__cxx11::list<_Tp, _Alloc>::erase(const_iterator) [with _Tp = hint_t; _Alloc = std::allocator<hint_t>]' at /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/list.tcc:158:15, > inlined from 'void printHints(FILE*, const char*)' at bam2hints.cc:334:26: >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/new_allocator.h:158:33: note: call to 'void operator delete(void*, std::size_t)' here > 158 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); > | ^ >x86_64-gentoo-linux-musl-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o bam2hints bam2hints.o -lbamtools -lz >mkdir -p ../../bin >cp bam2hints ../../bin >make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/bam2hints' >cd compileSpliceCands; make; >make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/compileSpliceCands' >x86_64-gentoo-linux-musl-gcc -Wall -pedantic -ansi -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c compileSpliceCands.c >x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o list.o list.c >compileSpliceCands.c: In function 'getChromosome': >compileSpliceCands.c:216:9: warning: 'strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-overflow=]] > 216 | strncat(checkstring,chromosomename,strlen(chromosomename)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >compileSpliceCands.c: In function 'parseLine': >compileSpliceCands.c:292:9: warning: 'strncpy' specified bound 256 equals destination size [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] > 292 | strncpy(d->name,tokens[0],LINEBUFFER); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >compileSpliceCands.c: In function 'parseList': >compileSpliceCands.c:337:59: warning: 'left' may be used uninitialized [-Wmaybe-uninitialized[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmaybe-uninitialized]] > 337 | if(isCompatibleStrand(left->strand,right->strand)) > | ~~~~^~~~~~~~ >compileSpliceCands.c:314:14: note: 'left' was declared here > 314 | Data left; > | ^~~~ >compileSpliceCands.c: In function 'main': >compileSpliceCands.c:563:17: warning: 'chromosomeLength' may be used uninitialized [-Wmaybe-uninitialized[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wmaybe-uninitialized]] > 563 | parseList(&L,actualChromosome,chromosomeLength,oldname,maxSpliceSiteDiff,threshold,maxIntronLength); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >compileSpliceCands.c:416:18: note: 'chromosomeLength' was declared here > 416 | long int chromosomeLength; > | ^~~~~~~~~~~~~~~~ >x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o compileSpliceCands compileSpliceCands.o list.o >cp compileSpliceCands ../../bin/compileSpliceCands >make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/compileSpliceCands' >cd filterBam; make; >make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/filterBam' >(cd src;make) >make[3]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/filterBam/src' >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c filterBam.cc -o filterBam.o -I/usr/include/bamtools -Iheaders -I./bamtools >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/MatePairs.cc -o MatePairs.o -I/usr/include/bamtools -Iheaders -I./bamtools >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/getReferenceName.cc -o getReferenceName.o -I/usr/include/bamtools -Iheaders -I./bamtools >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/initOptions.cc -o initOptions.o -I/usr/include/bamtools -Iheaders -I./bamtools >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/SingleAlignment.cc -o SingleAlignment.o -I/usr/include/bamtools -Iheaders -I./bamtools >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/printElapsedTime.cc -o printElapsedTime.o -I/usr/include/bamtools -Iheaders -I./bamtools >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/sumMandIOperations.cc -o sumMandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools >In file included from filterBam.cc:17: >/usr/include/bamtools/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 64 | typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase; > | ^~~~~~~~~~~~~~~ >In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/string:48, > from /usr/include/bamtools/api/BamReader.h:13, > from filterBam.cc:14: >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/sumDandIOperations.cc -o sumDandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c functions/PairednessCoverage.cc -o PairednessCoverage.o -I/usr/include/bamtools -Iheaders -I./bamtools >filterBam compiled with BAMTOOLS=/usr/include/bamtools >x86_64-gentoo-linux-musl-g++ -std=c++0x -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o -o filterBam -lbamtools -lz >mkdir -p ../../../bin >mv filterBam ../../../bin/filterBam >make[3]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/filterBam/src' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/filterBam' >cd homGeneMapping; make; >make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/homGeneMapping' >(cd src; make) >make[3]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/homGeneMapping/src' >x86_64-gentoo-linux-musl-g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -o gene.o gene.cc -I../include >x86_64-gentoo-linux-musl-g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -o genome.o genome.cc -I../include >x86_64-gentoo-linux-musl-g++ -c -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -o sqliteDB.o sqliteDB.cc -I../include >x86_64-gentoo-linux-musl-g++ -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -DBOOST -DM_SQLITE -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o homGeneMapping main.cc gene.o genome.o sqliteDB.o -I../include -lsqlite3 >mkdir -p ../../../bin/ >cp homGeneMapping ../../../bin/homGeneMapping >make[3]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/homGeneMapping/src' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/homGeneMapping' >cd joingenes; make; >make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/joingenes' >x86_64-gentoo-linux-musl-g++ -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x joingenes.cpp >x86_64-gentoo-linux-musl-g++ -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x jg_transcript.cpp >x86_64-gentoo-linux-musl-g++ -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x jg_ios.cpp >jg_ios.cpp: In function 'void load(std::unordered_map<std::__cxx11::basic_string<char>, Gene*>&, std::string&, int&, std::unordered_map<std::__cxx11::basic_string<char>, bool>&, Properties&)': >jg_ios.cpp:251:14: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 1014 bytes from a string of length 1023 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] > 251 | strncpy(copybuff, buff, 1014); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ >jg_ios.cpp:79:14: warning: 'char* strncpy(char*, const char*, size_t)' output may be truncated copying 1014 bytes from a string of length 1023 [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] > 79 | strncpy(copybuff, buff, 1014); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ >jg_ios.cpp:148:16: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 300 equals destination size [-Wstringop-truncation[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wstringop-truncation]] > 148 | strncpy(attribute, temp, 300); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ >x86_64-gentoo-linux-musl-g++ -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wall -std=gnu++0x -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 joingenes.o jg_transcript.o jg_ios.o -o joingenes >mkdir -p ../../bin/ >cp joingenes ../../bin/ >make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/joingenes' >cd utrrnaseq/Debug; make all; >make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/utrrnaseq/Debug' >Building file: ../src/Compute_UTRs.cpp >Building file: ../src/Coord_Transform.cpp >Invoking: GCC C++ Compiler >Building file: ../src/Genomic_Data.cpp >g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Compute_UTRs.d" -MT"src/Compute_UTRs.o" -o "src/Compute_UTRs.o" "../src/Compute_UTRs.cpp" >Building file: ../src/Splice_Sites.cpp >Invoking: GCC C++ Compiler >g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Coord_Transform.d" -MT"src/Coord_Transform.o" -o "src/Coord_Transform.o" "../src/Coord_Transform.cpp" >Invoking: GCC C++ Compiler >Invoking: GCC C++ Compiler >g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Splice_Sites.d" -MT"src/Splice_Sites.o" -o "src/Splice_Sites.o" "../src/Splice_Sites.cpp" >g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Genomic_Data.d" -MT"src/Genomic_Data.o" -o "src/Genomic_Data.o" "../src/Genomic_Data.cpp" >../src/Coord_Transform.cpp:25:59: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 25 | template <class Intron> struct finding_intron_greater_s : binary_function<Genomic_Data::Intron,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/refwrap.h:39, > from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/vector:66, > from ../src/flex_vec.hpp:8, > from ../src/Coord_Transform.cpp:5: >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/Coord_Transform.cpp:33:58: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 33 | template <class Intron> struct finding_intron_lesser_s : binary_function<Genomic_Data::Intron,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/Coord_Transform.cpp:41:59: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 41 | template <class Intron> struct finding_intron_greater_e : binary_function<Genomic_Data::Intron,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/Coord_Transform.cpp:49:58: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 49 | template <class Intron> struct finding_intron_lesser_e : binary_function<Genomic_Data::Intron,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/Coord_Transform.cpp: In constructor 'Coord_Transform::Coord_Transform(unsigned int, int, unsigned int, unsigned int, unsigned int, unsigned int, std::vector<Genomic_Data::Intron>*)': >../src/Coord_Transform.cpp:77:56: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_s<Genomic_Data::Intron>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 77 | bind2nd(finding_intron_greater_s<Genomic_Data::Intron>(), i)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:1438: >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >../src/Coord_Transform.cpp:81:56: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_e<Genomic_Data::Intron>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 81 | bind2nd(finding_intron_greater_e<Genomic_Data::Intron>(), i)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >../src/Coord_Transform.cpp:89:56: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_e<Genomic_Data::Intron>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 89 | bind2nd(finding_intron_lesser_e<Genomic_Data::Intron>(), i)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >../src/Coord_Transform.cpp:93:56: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_s<Genomic_Data::Intron>; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 93 | bind2nd(finding_intron_lesser_s<Genomic_Data::Intron>(), i)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >Finished building: ../src/Coord_Transform.cpp > >Building file: ../src/Supporting_Methods.cpp >Invoking: GCC C++ Compiler >g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Supporting_Methods.d" -MT"src/Supporting_Methods.o" -o "src/Supporting_Methods.o" "../src/Supporting_Methods.cpp" >Finished building: ../src/Supporting_Methods.cpp > >Building file: ../src/Test.cpp >Invoking: GCC C++ Compiler >g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/Test.d" -MT"src/Test.o" -o "src/Test.o" "../src/Test.cpp" >Finished building: ../src/Splice_Sites.cpp > >Building file: ../src/UTRs.cpp >Invoking: GCC C++ Compiler >g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/UTRs.d" -MT"src/UTRs.o" -o "src/UTRs.o" "../src/UTRs.cpp" >Finished building: ../src/Compute_UTRs.cpp > >Building file: ../src/main.cpp >Invoking: GCC C++ Compiler >g++ -I/usr/include/boost -O0 -g3 -pedantic -Wall -c -fmessage-length=0 -MMD -MP -MF"src/main.d" -MT"src/main.o" -o "src/main.o" "../src/main.cpp" >../src/UTRs.cpp:83:9: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 83 | binary_function<Genomic_Data::CRB,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/string:48, > from ../src/Genomic_Data.hpp:8, > from ../src/UTRs.cpp:5: >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/UTRs.cpp:92:9: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 92 | binary_function<Genomic_Data::CRB,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/UTRs.cpp:100:59: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 100 | template <class Intron> struct finding_intron_greater_s : binary_function<Genomic_Data::Intron,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/UTRs.cpp:108:58: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 108 | template <class Intron> struct finding_intron_lesser_s : binary_function<Genomic_Data::Intron,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/UTRs.cpp:116:59: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 116 | template <class Intron> struct finding_intron_greater_e : binary_function<Genomic_Data::Intron,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/UTRs.cpp:124:58: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 124 | template <class Intron> struct finding_intron_lesser_e : binary_function<Genomic_Data::Intron,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/UTRs.cpp:133:49: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 133 | template <class Repeat> struct finding_repeat : binary_function<Genomic_Data::Repeat,unsigned,bool> { > | ^~~~~~~~~~~~~~~ >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:131:12: note: declared here > 131 | struct binary_function > | ^~~~~~~~~~~~~~~ >../src/UTRs.cpp: In static member function 'static unsigned int UTRs::get_max_pos(unsigned int, int, unsigned int, unsigned int, std::vector<Genomic_Data::CRB>*)': >../src/UTRs.cpp:181:64: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_coding_region_greater<Genomic_Data::CRB>; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 181 | bind2nd(finding_coding_region_greater<Genomic_Data::CRB>(), pos)) : > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > >In file included from /usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/bits/stl_function.h:1438: >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >../src/UTRs.cpp:183:65: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_coding_region_lesser<Genomic_Data::CRB>; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 183 | bind2nd(finding_coding_region_lesser<Genomic_Data::CRB>(), pos)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >../src/UTRs.cpp: In static member function 'static bool UTRs::repeat_in_UTR(unsigned int, unsigned int, std::vector<Genomic_Data::Repeat>*)': >../src/UTRs.cpp:196:63: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_repeat<Genomic_Data::Repeat>; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 196 | it = find_if(repeats->begin(), repeats->end(), bind2nd(finding_repeat<Genomic_Data::Repeat>(), start)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >../src/UTRs.cpp: In static member function 'static std::vector<int> UTRs::find_introns_in_range(unsigned int, unsigned int, int, std::vector<Genomic_Data::Intron>*)': >../src/UTRs.cpp:233:79: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_s<Genomic_Data::Intron>; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 233 | it = find_if(introns->begin(), introns->end(), bind2nd(finding_intron_greater_s<Genomic_Data::Intron>(), start)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >../src/UTRs.cpp:240:79: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_greater_e<Genomic_Data::Intron>; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 240 | it = find_if(introns->begin(), introns->end(), bind2nd(finding_intron_greater_e<Genomic_Data::Intron>(), start)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >../src/UTRs.cpp:252:93: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_e<Genomic_Data::Intron>; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 252 | d_if(reverse_introns.begin(), reverse_introns.end(), bind2nd(finding_intron_lesser_e<Genomic_Data::Intron>(), start)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >../src/UTRs.cpp:259:93: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = finding_intron_lesser_s<Genomic_Data::Intron>; _Tp = unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wdeprecated-declarations]] > 259 | d_if(reverse_introns.begin(), reverse_introns.end(), bind2nd(finding_intron_lesser_s<Genomic_Data::Intron>(), start)); > | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > >/usr/lib/gcc/x86_64-gentoo-linux-musl/12.2.0/include/g++-v12/backward/binders.h:172:5: note: declared here > 172 | bind2nd(const _Operation& __fn, const _Tp& __x) > | ^~~~~~~ >Finished building: ../src/Genomic_Data.cpp > >Finished building: ../src/Test.cpp > >Finished building: ../src/main.cpp > >Finished building: ../src/UTRs.cpp > >Building target: utrrnaseq >Invoking: GCC C++ Linker >x86_64-gentoo-linux-musl-g++ -o "utrrnaseq" ./src/Compute_UTRs.o ./src/Coord_Transform.o ./src/Genomic_Data.o ./src/Splice_Sites.o ./src/Supporting_Methods.o ./src/Test.o ./src/UTRs.o ./src/main.o >Finished building target: utrrnaseq > >make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/utrrnaseq/Debug' >cd bam2wig; make; >make[2]: Entering directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/bam2wig' >x86_64-gentoo-linux-musl-gcc -Wall -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c bam2wig.c -o bam2wig.o -I/usr/include/htslib >x86_64-gentoo-linux-musl-gcc -Wall -O2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 bam2wig.o -o bam2wig -lhts -lz -lpthread >mkdir -p ../../bin >cp bam2wig ../../bin/bam2wig >make[2]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs/bam2wig' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/auxprogs' >>>> Source compiled. >>>> Test phase: sci-biology/augustus-3.4.0-r2 >make -j4 test >cd tests/examples && ./testcases.py --compare --html >Removing generated test files... >---------------------------------------------------------------------- >Executing small test suite >---------------------------------------------------------------------- >Creating SQLite database for cgp test cases... >test_utr_on (__main__.TestAugustus) ... ok >test_hints_MPE (__main__.TestAugustus) ... ok >test_training_new_species (__main__.TestAugustus) ... FAIL >test_ab_initio_prediction (__main__.TestAugustus) ... FAIL >test_format_and_error_out (__main__.TestAugustus) ... FAIL >test_cgp (__main__.TestAugustus) ... FAIL >test_cgp_sqlite (__main__.TestAugustus) ... FAIL >test_cgp_sqlite_hints (__main__.TestAugustus) ... FAIL > >====================================================================== >FAIL: test_training_new_species (__main__.TestAugustus) >---------------------------------------------------------------------- >Traceback (most recent call last): > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 407, in test_training_new_species > self.training_new_species(False) > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 460, in training_new_species > self.assertEqualFolders(reffolder, resfolder) > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders > self.assertEqual(diff, '', diff) >AssertionError: '*** expected_results/test_training_new_sp[136692 chars]";\n' != '' : *** expected_results/test_training_new_species/test.out >--- results/test_training_new_species/test.out >*************** >*** 25,28 **** >! chr2L_6215-22136 AUGUSTUS gene 1 1906 0.65 + . g1 >! chr2L_6215-22136 AUGUSTUS transcript 1 1906 0.65 + . g1.t1 >! chr2L_6215-22136 AUGUSTUS intron 1 1359 1 + . transcript_id "g1.t1"; gene_id "g1"; >! chr2L_6215-22136 AUGUSTUS CDS 1360 1906 0.65 + 1 transcript_id "g1.t1"; gene_id "g1"; >--- 25,28 ---- >! chr2L_6215-22136 AUGUSTUS gene 1 1906 0.72 + . g1 >! chr2L_6215-22136 AUGUSTUS transcript 1 1906 0.72 + . g1.t1 >! chr2L_6215-22136 AUGUSTUS intron 1 1359 0.99 + . transcript_id "g1.t1"; gene_id "g1"; >! chr2L_6215-22136 AUGUSTUS CDS 1360 1906 0.72 + 1 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 36,37 **** >! chr2L_6215-22136 AUGUSTUS gene 2550 3062 0.64 + . g2 >! chr2L_6215-22136 AUGUSTUS transcript 2550 3062 0.64 + . g2.t1 >--- 36,37 ---- >! chr2L_6215-22136 AUGUSTUS gene 2550 3062 0.73 + . g2 >! chr2L_6215-22136 AUGUSTUS transcript 2550 3062 0.73 + . g2.t1 >*************** >*** 39 **** >! chr2L_6215-22136 AUGUSTUS CDS 2550 3062 0.64 + 0 transcript_id "g2.t1"; gene_id "g2"; >--- 39 ---- >! chr2L_6215-22136 AUGUSTUS CDS 2550 3062 0.73 + 0 transcript_id "g2.t1"; gene_id "g2"; >*************** >*** 105,108 **** >! chr2L_115837-121448 AUGUSTUS gene 1 3222 0.47 - . g3 >! chr2L_115837-121448 AUGUSTUS transcript 1 3222 0.47 - . g3.t1 >! chr2L_115837-121448 AUGUSTUS intron 296 2299 0.68 - . transcript_id "g3.t1"; gene_id "g3"; >! chr2L_115837-121448 AUGUSTUS intron 2469 2524 0.99 - . transcript_id "g3.t1"; gene_id "g3"; >--- 105,108 ---- >! chr2L_115837-121448 AUGUSTUS gene 1 3222 0.54 - . g3 >! chr2L_115837-121448 AUGUSTUS transcript 1 3222 0.54 - . g3.t1 >! chr2L_115837-121448 AUGUSTUS intron 296 2299 0.7 - . transcript_id "g3.t1"; gene_id "g3"; >! chr2L_115837-121448 AUGUSTUS intron 2469 2524 0.98 - . transcript_id "g3.t1"; gene_id "g3"; >*************** >*** 110,111 **** >! chr2L_115837-121448 AUGUSTUS CDS 1 295 0.57 - 2 transcript_id "g3.t1"; gene_id "g3"; >! chr2L_115837-121448 AUGUSTUS CDS 2300 2468 0.99 - 0 transcript_id "g3.t1"; gene_id "g3"; >--- 110,111 ---- >! chr2L_115837-121448 AUGUSTUS CDS 1 295 0.68 - 2 transcript_id "g3.t1"; gene_id "g3"; >! chr2L_115837-121448 AUGUSTUS CDS 2300 2468 0.97 - 0 transcript_id "g3.t1"; gene_id "g3"; >*************** >*** 113 **** >! chr2L_115837-121448 AUGUSTUS CDS 3095 3222 0.82 - 0 transcript_id "g3.t1"; gene_id "g3"; >--- 113 ---- >! chr2L_115837-121448 AUGUSTUS CDS 3095 3222 0.83 - 0 transcript_id "g3.t1"; gene_id "g3"; >*************** >*** 132,133 **** >! chr2L_138531-144234 AUGUSTUS gene 165 602 0.48 - . g4 >! chr2L_138531-144234 AUGUSTUS transcript 165 602 0.48 - . g4.t1 >--- 132,133 ---- >! chr2L_138531-144234 AUGUSTUS gene 165 602 0.37 - . g4 >! chr2L_138531-144234 AUGUSTUS transcript 165 602 0.37 - . g4.t1 >*************** >*** 135 **** >! chr2L_138531-144234 AUGUSTUS CDS 165 602 0.48 - 0 transcript_id "g4.t1"; gene_id "g4"; >--- 135 ---- >! chr2L_138531-144234 AUGUSTUS CDS 165 602 0.37 - 0 transcript_id "g4.t1"; gene_id "g4"; >*************** >*** 142,143 **** >! chr2L_138531-144234 AUGUSTUS gene 941 3957 0.56 - . g5 >! chr2L_138531-144234 AUGUSTUS transcript 941 3957 0.56 - . g5.t1 >--- 142,143 ---- >! chr2L_138531-144234 AUGUSTUS gene 941 3957 0.58 - . g5 >! chr2L_138531-144234 AUGUSTUS transcript 941 3957 0.58 - . g5.t1 >*************** >*** 145,153 **** >! chr2L_138531-144234 AUGUSTUS intron 1158 1210 1 - . transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS intron 1425 1583 0.83 - . transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS intron 2435 2865 0.77 - . transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS intron 3080 3131 0.89 - . transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 941 1157 0.97 - 1 transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 1211 1424 1 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 1584 2434 0.64 - 1 transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 2866 3079 0.99 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 3132 3957 0.89 - 0 transcript_id "g5.t1"; gene_id "g5"; >--- 145,153 ---- >! chr2L_138531-144234 AUGUSTUS intron 1158 1210 0.97 - . transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS intron 1425 1583 0.85 - . transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS intron 2435 2865 0.85 - . transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS intron 3080 3131 0.81 - . transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 941 1157 0.98 - 1 transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 1211 1424 0.97 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 1584 2434 0.73 - 1 transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 2866 3079 0.97 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chr2L_138531-144234 AUGUSTUS CDS 3132 3957 0.82 - 0 transcript_id "g5.t1"; gene_id "g5"; >*************** >*** 167,168 **** >! chr2L_138531-144234 AUGUSTUS gene 4875 5564 0.62 + . g6 >! chr2L_138531-144234 AUGUSTUS transcript 4875 5564 0.62 + . g6.t1 >--- 167,168 ---- >! chr2L_138531-144234 AUGUSTUS gene 4875 5564 0.65 + . g6 >! chr2L_138531-144234 AUGUSTUS transcript 4875 5564 0.65 + . g6.t1 >*************** >*** 170 **** >! chr2L_138531-144234 AUGUSTUS CDS 4875 5564 0.62 + 0 transcript_id "g6.t1"; gene_id "g6"; >--- 170 ---- >! chr2L_138531-144234 AUGUSTUS CDS 4875 5564 0.65 + 0 transcript_id "g6.t1"; gene_id "g6"; >*************** >*** 190,191 **** >! chr2L_155410-156095 AUGUSTUS gene 163 541 0.29 + . g7 >! chr2L_155410-156095 AUGUSTUS transcript 163 541 0.29 + . g7.t1 >--- 190,191 ---- >! chr2L_155410-156095 AUGUSTUS gene 163 541 0.42 + . g7 >! chr2L_155410-156095 AUGUSTUS transcript 163 541 0.42 + . g7.t1 >*************** >*** 194 **** >! chr2L_155410-156095 AUGUSTUS CDS 163 375 0.29 + 0 transcript_id "g7.t1"; gene_id "g7"; >--- 194 ---- >! chr2L_155410-156095 AUGUSTUS CDS 163 375 0.42 + 0 transcript_id "g7.t1"; gene_id "g7"; >*************** >*** 291,292 **** >! chr2L_211022-247287 AUGUSTUS gene 1164 7861 0.95 - . g9 >! chr2L_211022-247287 AUGUSTUS transcript 1164 7861 0.95 - . g9.t1 >--- 291,292 ---- >! chr2L_211022-247287 AUGUSTUS gene 1164 7861 0.89 - . g9 >! chr2L_211022-247287 AUGUSTUS transcript 1164 7861 0.89 - . g9.t1 >*************** >*** 295,296 **** >! chr2L_211022-247287 AUGUSTUS intron 4656 4751 0.99 - . transcript_id "g9.t1"; gene_id "g9"; >! chr2L_211022-247287 AUGUSTUS intron 4987 5055 0.99 - . transcript_id "g9.t1"; gene_id "g9"; >--- 295,296 ---- >! chr2L_211022-247287 AUGUSTUS intron 4656 4751 1 - . transcript_id "g9.t1"; gene_id "g9"; >! chr2L_211022-247287 AUGUSTUS intron 4987 5055 0.97 - . transcript_id "g9.t1"; gene_id "g9"; >*************** >*** 298,299 **** >! chr2L_211022-247287 AUGUSTUS intron 5553 5610 1 - . transcript_id "g9.t1"; gene_id "g9"; >! chr2L_211022-247287 AUGUSTUS CDS 1164 3921 1 - 1 transcript_id "g9.t1"; gene_id "g9"; >--- 298,299 ---- >! chr2L_211022-247287 AUGUSTUS intron 5553 5610 0.99 - . transcript_id "g9.t1"; gene_id "g9"; >! chr2L_211022-247287 AUGUSTUS CDS 1164 3921 0.99 - 1 transcript_id "g9.t1"; gene_id "g9"; >*************** >*** 301,302 **** >! chr2L_211022-247287 AUGUSTUS CDS 4752 4986 0.99 - 0 transcript_id "g9.t1"; gene_id "g9"; >! chr2L_211022-247287 AUGUSTUS CDS 5056 5254 0.99 - 1 transcript_id "g9.t1"; gene_id "g9"; >--- 301,302 ---- >! chr2L_211022-247287 AUGUSTUS CDS 4752 4986 0.97 - 0 transcript_id "g9.t1"; gene_id "g9"; >! chr2L_211022-247287 AUGUSTUS CDS 5056 5254 1 - 1 transcript_id "g9.t1"; gene_id "g9"; >*************** >*** 304 **** >! chr2L_211022-247287 AUGUSTUS CDS 5611 7861 0.96 - 0 transcript_id "g9.t1"; gene_id "g9"; >--- 304 ---- >! chr2L_211022-247287 AUGUSTUS CDS 5611 7861 0.93 - 0 transcript_id "g9.t1"; gene_id "g9"; >*************** >*** 331,332 **** >! chr2L_211022-247287 AUGUSTUS gene 15086 21150 0.14 - . g10 >! chr2L_211022-247287 AUGUSTUS transcript 15086 21150 0.14 - . g10.t1 >--- 331,332 ---- >! chr2L_211022-247287 AUGUSTUS gene 15086 21150 0.16 - . g10 >! chr2L_211022-247287 AUGUSTUS transcript 15086 21150 0.16 - . g10.t1 >*************** >*** 336,340 **** >! chr2L_211022-247287 AUGUSTUS intron 18362 19516 0.62 - . transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS intron 19607 19736 0.82 - . transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS intron 20014 20941 0.97 - . transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS intron 21081 21144 0.2 - . transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 15086 15487 0.92 - 0 transcript_id "g10.t1"; gene_id "g10"; >--- 336,340 ---- >! chr2L_211022-247287 AUGUSTUS intron 18362 19516 0.61 - . transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS intron 19607 19736 0.83 - . transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS intron 20014 20941 0.99 - . transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS intron 21081 21144 0.29 - . transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 15086 15487 0.9 - 0 transcript_id "g10.t1"; gene_id "g10"; >*************** >*** 342,346 **** >! chr2L_211022-247287 AUGUSTUS CDS 18152 18361 0.71 - 1 transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 19517 19606 0.76 - 1 transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 19737 20013 0.91 - 2 transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 20942 21080 0.55 - 0 transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 21145 21150 0.23 - 0 transcript_id "g10.t1"; gene_id "g10"; >--- 342,346 ---- >! chr2L_211022-247287 AUGUSTUS CDS 18152 18361 0.7 - 1 transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 19517 19606 0.78 - 1 transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 19737 20013 0.94 - 2 transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 20942 21080 0.58 - 0 transcript_id "g10.t1"; gene_id "g10"; >! chr2L_211022-247287 AUGUSTUS CDS 21145 21150 0.34 - 0 transcript_id "g10.t1"; gene_id "g10"; >*************** >*** 359,360 **** >! chr2L_211022-247287 AUGUSTUS gene 21551 22944 0.97 + . g11 >! chr2L_211022-247287 AUGUSTUS transcript 21551 22944 0.97 + . g11.t1 >--- 359,360 ---- >! chr2L_211022-247287 AUGUSTUS gene 21551 22944 0.92 + . g11 >! chr2L_211022-247287 AUGUSTUS transcript 21551 22944 0.92 + . g11.t1 >*************** >*** 363 **** >! chr2L_211022-247287 AUGUSTUS CDS 21551 22133 0.97 + 0 transcript_id "g11.t1"; gene_id "g11"; >--- 363 ---- >! chr2L_211022-247287 AUGUSTUS CDS 21551 22133 0.92 + 0 transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 374,375 **** >! chr2L_211022-247287 AUGUSTUS gene 22972 32911 0.61 - . g12 >! chr2L_211022-247287 AUGUSTUS transcript 22972 32911 0.61 - . g12.t1 >--- 374,375 ---- >! chr2L_211022-247287 AUGUSTUS gene 22972 32911 0.57 - . g12 >! chr2L_211022-247287 AUGUSTUS transcript 22972 32911 0.57 - . g12.t1 >*************** >*** 380 **** >! chr2L_211022-247287 AUGUSTUS CDS 23216 31122 0.62 - 1 transcript_id "g12.t1"; gene_id "g12"; >--- 380 ---- >! chr2L_211022-247287 AUGUSTUS CDS 23216 31122 0.58 - 1 transcript_id "g12.t1"; gene_id "g12"; >*************** >*** 425,426 **** >! chr2L_270315-274799 AUGUSTUS gene 1 1000 0.99 + . g13 >! chr2L_270315-274799 AUGUSTUS transcript 1 1000 0.99 + . g13.t1 >--- 425,426 ---- >! chr2L_270315-274799 AUGUSTUS gene 1 1000 0.97 + . g13 >! chr2L_270315-274799 AUGUSTUS transcript 1 1000 0.97 + . g13.t1 >*************** >*** 428 **** >! chr2L_270315-274799 AUGUSTUS CDS 1 292 0.99 + 1 transcript_id "g13.t1"; gene_id "g13"; >--- 428 ---- >! chr2L_270315-274799 AUGUSTUS CDS 1 292 0.97 + 1 transcript_id "g13.t1"; gene_id "g13"; >*************** >*** 438,439 **** >! chr2L_270315-274799 AUGUSTUS gene 1653 3320 0.57 - . g14 >! chr2L_270315-274799 AUGUSTUS transcript 1653 3320 0.57 - . g14.t1 >--- 438,439 ---- >! chr2L_270315-274799 AUGUSTUS gene 1653 3320 0.46 - . g14 >! chr2L_270315-274799 AUGUSTUS transcript 1653 3320 0.46 - . g14.t1 >*************** >*** 441,443 **** >! chr2L_270315-274799 AUGUSTUS intron 2193 2240 0.72 - . transcript_id "g14.t1"; gene_id "g14"; >! chr2L_270315-274799 AUGUSTUS CDS 1653 2192 0.57 - 0 transcript_id "g14.t1"; gene_id "g14"; >! chr2L_270315-274799 AUGUSTUS CDS 2241 3320 0.99 - 0 transcript_id "g14.t1"; gene_id "g14"; >--- 441,443 ---- >! chr2L_270315-274799 AUGUSTUS intron 2193 2240 0.71 - . transcript_id "g14.t1"; gene_id "g14"; >! chr2L_270315-274799 AUGUSTUS CDS 1653 2192 0.47 - 0 transcript_id "g14.t1"; gene_id "g14"; >! chr2L_270315-274799 AUGUSTUS CDS 2241 3320 0.98 - 0 transcript_id "g14.t1"; gene_id "g14"; >*************** >*** 454,455 **** >! chr2L_270315-274799 AUGUSTUS gene 3672 4337 0.36 + . g15 >! chr2L_270315-274799 AUGUSTUS transcript 3672 4337 0.36 + . g15.t1 >--- 454,455 ---- >! chr2L_270315-274799 AUGUSTUS gene 3672 4337 0.41 + . g15 >! chr2L_270315-274799 AUGUSTUS transcript 3672 4337 0.41 + . g15.t1 >*************** >*** 457 **** >! chr2L_270315-274799 AUGUSTUS CDS 3672 4337 0.36 + 0 transcript_id "g15.t1"; gene_id "g15"; >--- 457 ---- >! chr2L_270315-274799 AUGUSTUS CDS 3672 4337 0.41 + 0 transcript_id "g15.t1"; gene_id "g15"; >*************** >*** 481,482 **** >! chr2L_274800-277496 AUGUSTUS gene 148 2343 0.53 - . g16 >! chr2L_274800-277496 AUGUSTUS transcript 148 2343 0.53 - . g16.t1 >--- 481,482 ---- >! chr2L_274800-277496 AUGUSTUS gene 148 2343 0.55 - . g16 >! chr2L_274800-277496 AUGUSTUS transcript 148 2343 0.55 - . g16.t1 >*************** >*** 486 **** >! chr2L_274800-277496 AUGUSTUS intron 2105 2159 0.54 - . transcript_id "g16.t1"; gene_id "g16"; >--- 486 ---- >! chr2L_274800-277496 AUGUSTUS intron 2105 2159 0.55 - . transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 490 **** >! chr2L_274800-277496 AUGUSTUS CDS 2160 2343 0.54 - 0 transcript_id "g16.t1"; gene_id "g16"; >--- 490 ---- >! chr2L_274800-277496 AUGUSTUS CDS 2160 2343 0.55 - 0 transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 514,517 **** >! chr2L_290745-293312 AUGUSTUS gene 1 266 0.97 - . g17 >! chr2L_290745-293312 AUGUSTUS transcript 1 266 0.97 - . g17.t1 >! chr2L_290745-293312 AUGUSTUS intron 1 68 0.97 - . transcript_id "g17.t1"; gene_id "g17"; >! chr2L_290745-293312 AUGUSTUS CDS 69 266 0.97 - 0 transcript_id "g17.t1"; gene_id "g17"; >--- 514,517 ---- >! chr2L_290745-293312 AUGUSTUS gene 1 266 0.93 - . g17 >! chr2L_290745-293312 AUGUSTUS transcript 1 266 0.93 - . g17.t1 >! chr2L_290745-293312 AUGUSTUS intron 1 68 0.93 - . transcript_id "g17.t1"; gene_id "g17"; >! chr2L_290745-293312 AUGUSTUS CDS 69 266 0.93 - 0 transcript_id "g17.t1"; gene_id "g17"; >*************** >*** 523,524 **** >! chr2L_290745-293312 AUGUSTUS gene 1825 2258 0.98 + . g18 >! chr2L_290745-293312 AUGUSTUS transcript 1825 2258 0.98 + . g18.t1 >--- 523,524 ---- >! chr2L_290745-293312 AUGUSTUS gene 1825 2258 0.96 + . g18 >! chr2L_290745-293312 AUGUSTUS transcript 1825 2258 0.96 + . g18.t1 >*************** >*** 526,527 **** >! chr2L_290745-293312 AUGUSTUS intron 1917 1972 0.98 + . transcript_id "g18.t1"; gene_id "g18"; >! chr2L_290745-293312 AUGUSTUS CDS 1825 1916 0.98 + 0 transcript_id "g18.t1"; gene_id "g18"; >--- 526,527 ---- >! chr2L_290745-293312 AUGUSTUS intron 1917 1972 0.96 + . transcript_id "g18.t1"; gene_id "g18"; >! chr2L_290745-293312 AUGUSTUS CDS 1825 1916 0.96 + 0 transcript_id "g18.t1"; gene_id "g18"; >*************** >*** 545,546 **** >! chr2L_319811-321676 AUGUSTUS gene 578 1411 0.92 - . g19 >! chr2L_319811-321676 AUGUSTUS transcript 578 1411 0.92 - . g19.t1 >--- 545,546 ---- >! chr2L_319811-321676 AUGUSTUS gene 578 1411 0.96 - . g19 >! chr2L_319811-321676 AUGUSTUS transcript 578 1411 0.96 - . g19.t1 >*************** >*** 548 **** >! chr2L_319811-321676 AUGUSTUS CDS 578 1411 0.92 - 0 transcript_id "g19.t1"; gene_id "g19"; >--- 548 ---- >! chr2L_319811-321676 AUGUSTUS CDS 578 1411 0.96 - 0 transcript_id "g19.t1"; gene_id "g19"; >*************** >*** 581,582 **** >! chr2L_408642-414424 AUGUSTUS gene 747 4818 0.96 - . g20 >! chr2L_408642-414424 AUGUSTUS transcript 747 4818 0.96 - . g20.t1 >--- 581,582 ---- >! chr2L_408642-414424 AUGUSTUS gene 747 4818 0.95 - . g20 >! chr2L_408642-414424 AUGUSTUS transcript 747 4818 0.95 - . g20.t1 >*************** >*** 584 **** >! chr2L_408642-414424 AUGUSTUS intron 825 890 0.97 - . transcript_id "g20.t1"; gene_id "g20"; >--- 584 ---- >! chr2L_408642-414424 AUGUSTUS intron 825 890 0.96 - . transcript_id "g20.t1"; gene_id "g20"; >*************** >*** 590,591 **** >! chr2L_408642-414424 AUGUSTUS intron 4018 4754 0.99 - . transcript_id "g20.t1"; gene_id "g20"; >! chr2L_408642-414424 AUGUSTUS CDS 747 824 0.97 - 0 transcript_id "g20.t1"; gene_id "g20"; >--- 590,591 ---- >! chr2L_408642-414424 AUGUSTUS intron 4018 4754 1 - . transcript_id "g20.t1"; gene_id "g20"; >! chr2L_408642-414424 AUGUSTUS CDS 747 824 0.96 - 0 transcript_id "g20.t1"; gene_id "g20"; >*************** >*** 597 **** >! chr2L_408642-414424 AUGUSTUS CDS 3806 4017 0.99 - 2 transcript_id "g20.t1"; gene_id "g20"; >--- 597 ---- >! chr2L_408642-414424 AUGUSTUS CDS 3806 4017 1 - 2 transcript_id "g20.t1"; gene_id "g20"; >*************** >*** 625,626 **** >! chr2L_476395-484475 AUGUSTUS gene 593 3081 0.55 - . g21 >! chr2L_476395-484475 AUGUSTUS transcript 593 3081 0.55 - . g21.t1 >--- 625,626 ---- >! chr2L_476395-484475 AUGUSTUS gene 593 3081 0.52 - . g21 >! chr2L_476395-484475 AUGUSTUS transcript 593 3081 0.52 - . g21.t1 >*************** >*** 628 **** >! chr2L_476395-484475 AUGUSTUS intron 1811 3012 0.72 - . transcript_id "g21.t1"; gene_id "g21"; >--- 628 ---- >! chr2L_476395-484475 AUGUSTUS intron 1811 3012 0.85 - . transcript_id "g21.t1"; gene_id "g21"; >*************** >*** 630 **** >! chr2L_476395-484475 AUGUSTUS CDS 3013 3081 0.55 - 0 transcript_id "g21.t1"; gene_id "g21"; >--- 630 ---- >! chr2L_476395-484475 AUGUSTUS CDS 3013 3081 0.52 - 0 transcript_id "g21.t1"; gene_id "g21"; >*************** >*** 650,651 **** >! chr2L_700859-712727 AUGUSTUS gene 5001 6869 0.44 - . g22 >! chr2L_700859-712727 AUGUSTUS transcript 5001 6869 0.44 - . g22.t1 >--- 650,651 ---- >! chr2L_700859-712727 AUGUSTUS gene 5001 6869 0.47 - . g22 >! chr2L_700859-712727 AUGUSTUS transcript 5001 6869 0.47 - . g22.t1 >*************** >*** 653 **** >! chr2L_700859-712727 AUGUSTUS CDS 5001 6869 0.44 - 0 transcript_id "g22.t1"; gene_id "g22"; >--- 653 ---- >! chr2L_700859-712727 AUGUSTUS CDS 5001 6869 0.47 - 0 transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 685,688 **** >! chr2L_733074-745995 AUGUSTUS gene 1 1053 0.77 + . g23 >! chr2L_733074-745995 AUGUSTUS transcript 1 1053 0.77 + . g23.t1 >! chr2L_733074-745995 AUGUSTUS intron 1 886 0.77 + . transcript_id "g23.t1"; gene_id "g23"; >! chr2L_733074-745995 AUGUSTUS CDS 887 1053 0.78 + 2 transcript_id "g23.t1"; gene_id "g23"; >--- 685,688 ---- >! chr2L_733074-745995 AUGUSTUS gene 1 1053 0.79 + . g23 >! chr2L_733074-745995 AUGUSTUS transcript 1 1053 0.79 + . g23.t1 >! chr2L_733074-745995 AUGUSTUS intron 1 886 0.79 + . transcript_id "g23.t1"; gene_id "g23"; >! chr2L_733074-745995 AUGUSTUS CDS 887 1053 0.8 + 2 transcript_id "g23.t1"; gene_id "g23"; >*************** >*** 694,695 **** >! chr2L_733074-745995 AUGUSTUS gene 5001 7874 0.91 - . g24 >! chr2L_733074-745995 AUGUSTUS transcript 5001 7874 0.91 - . g24.t1 >--- 694,695 ---- >! chr2L_733074-745995 AUGUSTUS gene 5001 7874 0.89 - . g24 >! chr2L_733074-745995 AUGUSTUS transcript 5001 7874 0.89 - . g24.t1 >*************** >*** 698 **** >! chr2L_733074-745995 AUGUSTUS intron 5363 5434 0.96 - . transcript_id "g24.t1"; gene_id "g24"; >--- 698 ---- >! chr2L_733074-745995 AUGUSTUS intron 5363 5434 0.98 - . transcript_id "g24.t1"; gene_id "g24"; >*************** >*** 707 **** >! chr2L_733074-745995 AUGUSTUS CDS 7727 7874 1 - 0 transcript_id "g24.t1"; gene_id "g24"; >--- 707 ---- >! chr2L_733074-745995 AUGUSTUS CDS 7727 7874 0.98 - 0 transcript_id "g24.t1"; gene_id "g24"; >*************** >*** 748,749 **** >! chr2L_774204-784563 AUGUSTUS gene 7073 8621 0.69 + . g27 >! chr2L_774204-784563 AUGUSTUS transcript 7073 8621 0.69 + . g27.t1 >--- 748,749 ---- >! chr2L_774204-784563 AUGUSTUS gene 7073 8621 0.71 + . g27 >! chr2L_774204-784563 AUGUSTUS transcript 7073 8621 0.71 + . g27.t1 >*************** >*** 751,752 **** >! chr2L_774204-784563 AUGUSTUS intron 7846 7920 0.99 + . transcript_id "g27.t1"; gene_id "g27"; >! chr2L_774204-784563 AUGUSTUS intron 7979 8034 0.99 + . transcript_id "g27.t1"; gene_id "g27"; >--- 751,752 ---- >! chr2L_774204-784563 AUGUSTUS intron 7846 7920 0.98 + . transcript_id "g27.t1"; gene_id "g27"; >! chr2L_774204-784563 AUGUSTUS intron 7979 8034 1 + . transcript_id "g27.t1"; gene_id "g27"; >*************** >*** 754,756 **** >! chr2L_774204-784563 AUGUSTUS CDS 7073 7845 0.69 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chr2L_774204-784563 AUGUSTUS CDS 7921 7978 0.99 + 1 transcript_id "g27.t1"; gene_id "g27"; >! chr2L_774204-784563 AUGUSTUS CDS 8035 8238 0.99 + 0 transcript_id "g27.t1"; gene_id "g27"; >--- 754,756 ---- >! chr2L_774204-784563 AUGUSTUS CDS 7073 7845 0.71 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chr2L_774204-784563 AUGUSTUS CDS 7921 7978 0.98 + 1 transcript_id "g27.t1"; gene_id "g27"; >! chr2L_774204-784563 AUGUSTUS CDS 8035 8238 1 + 0 transcript_id "g27.t1"; gene_id "g27"; >*************** >*** 779,780 **** >! chr2L_811535-814697 AUGUSTUS gene 102 1777 0.9 + . g28 >! chr2L_811535-814697 AUGUSTUS transcript 102 1777 0.9 + . g28.t1 >--- 779,780 ---- >! chr2L_811535-814697 AUGUSTUS gene 102 1777 0.98 + . g28 >! chr2L_811535-814697 AUGUSTUS transcript 102 1777 0.98 + . g28.t1 >*************** >*** 782,784 **** >! chr2L_811535-814697 AUGUSTUS intron 963 1027 0.91 + . transcript_id "g28.t1"; gene_id "g28"; >! chr2L_811535-814697 AUGUSTUS CDS 102 962 0.94 + 0 transcript_id "g28.t1"; gene_id "g28"; >! chr2L_811535-814697 AUGUSTUS CDS 1028 1777 0.93 + 0 transcript_id "g28.t1"; gene_id "g28"; >--- 782,784 ---- >! chr2L_811535-814697 AUGUSTUS intron 963 1027 0.98 + . transcript_id "g28.t1"; gene_id "g28"; >! chr2L_811535-814697 AUGUSTUS CDS 102 962 0.99 + 0 transcript_id "g28.t1"; gene_id "g28"; >! chr2L_811535-814697 AUGUSTUS CDS 1028 1777 0.98 + 0 transcript_id "g28.t1"; gene_id "g28"; >*************** >*** 795,796 **** >! chr2L_811535-814697 AUGUSTUS gene 1923 3075 0.39 - . g29 >! chr2L_811535-814697 AUGUSTUS transcript 1923 3075 0.39 - . g29.t1 >--- 795,796 ---- >! chr2L_811535-814697 AUGUSTUS gene 1923 3075 0.3 - . g29 >! chr2L_811535-814697 AUGUSTUS transcript 1923 3075 0.3 - . g29.t1 >*************** >*** 799 **** >! chr2L_811535-814697 AUGUSTUS intron 2651 2708 0.4 - . transcript_id "g29.t1"; gene_id "g29"; >--- 799 ---- >! chr2L_811535-814697 AUGUSTUS intron 2651 2708 0.3 - . transcript_id "g29.t1"; gene_id "g29"; >*************** >*** 801,802 **** >! chr2L_811535-814697 AUGUSTUS CDS 2417 2650 0.4 - 2 transcript_id "g29.t1"; gene_id "g29"; >! chr2L_811535-814697 AUGUSTUS CDS 2709 3075 0.49 - 0 transcript_id "g29.t1"; gene_id "g29"; >--- 801,802 ---- >! chr2L_811535-814697 AUGUSTUS CDS 2417 2650 0.31 - 2 transcript_id "g29.t1"; gene_id "g29"; >! chr2L_811535-814697 AUGUSTUS CDS 2709 3075 0.53 - 0 transcript_id "g29.t1"; gene_id "g29"; >*************** >*** 823,824 **** >! chr2L_817742-819706 AUGUSTUS gene 766 1593 0.74 - . g30 >! chr2L_817742-819706 AUGUSTUS transcript 766 1593 0.74 - . g30.t1 >--- 823,824 ---- >! chr2L_817742-819706 AUGUSTUS gene 766 1593 0.69 - . g30 >! chr2L_817742-819706 AUGUSTUS transcript 766 1593 0.69 - . g30.t1 >*************** >*** 826,828 **** >! chr2L_817742-819706 AUGUSTUS intron 903 962 0.74 - . transcript_id "g30.t1"; gene_id "g30"; >! chr2L_817742-819706 AUGUSTUS CDS 766 902 0.74 - 2 transcript_id "g30.t1"; gene_id "g30"; >! chr2L_817742-819706 AUGUSTUS CDS 963 1593 0.74 - 0 transcript_id "g30.t1"; gene_id "g30"; >--- 826,828 ---- >! chr2L_817742-819706 AUGUSTUS intron 903 962 0.7 - . transcript_id "g30.t1"; gene_id "g30"; >! chr2L_817742-819706 AUGUSTUS CDS 766 902 0.69 - 2 transcript_id "g30.t1"; gene_id "g30"; >! chr2L_817742-819706 AUGUSTUS CDS 963 1593 0.7 - 0 transcript_id "g30.t1"; gene_id "g30"; >*************** >*** 846,849 **** >! chr2L_829735-838904 AUGUSTUS gene 1 2189 0.81 + . g31 >! chr2L_829735-838904 AUGUSTUS transcript 1 2189 0.81 + . g31.t1 >! chr2L_829735-838904 AUGUSTUS intron 238 410 0.82 + . transcript_id "g31.t1"; gene_id "g31"; >! chr2L_829735-838904 AUGUSTUS intron 616 1003 0.99 + . transcript_id "g31.t1"; gene_id "g31"; >--- 846,849 ---- >! chr2L_829735-838904 AUGUSTUS gene 1 2189 0.73 + . g31 >! chr2L_829735-838904 AUGUSTUS transcript 1 2189 0.73 + . g31.t1 >! chr2L_829735-838904 AUGUSTUS intron 238 410 0.73 + . transcript_id "g31.t1"; gene_id "g31"; >! chr2L_829735-838904 AUGUSTUS intron 616 1003 1 + . transcript_id "g31.t1"; gene_id "g31"; >*************** >*** 852,853 **** >! chr2L_829735-838904 AUGUSTUS CDS 1 237 0.82 + 2 transcript_id "g31.t1"; gene_id "g31"; >! chr2L_829735-838904 AUGUSTUS CDS 411 615 0.99 + 2 transcript_id "g31.t1"; gene_id "g31"; >--- 852,853 ---- >! chr2L_829735-838904 AUGUSTUS CDS 1 237 0.73 + 2 transcript_id "g31.t1"; gene_id "g31"; >! chr2L_829735-838904 AUGUSTUS CDS 411 615 1 + 2 transcript_id "g31.t1"; gene_id "g31"; >*************** >*** 867,868 **** >! chr2L_829735-838904 AUGUSTUS gene 4811 9170 0.69 - . g32 >! chr2L_829735-838904 AUGUSTUS transcript 4811 9170 0.69 - . g32.t1 >--- 867,868 ---- >! chr2L_829735-838904 AUGUSTUS gene 4811 9170 0.73 - . g32 >! chr2L_829735-838904 AUGUSTUS transcript 4811 9170 0.73 - . g32.t1 >*************** >*** 870 **** >! chr2L_829735-838904 AUGUSTUS intron 4850 5239 0.84 - . transcript_id "g32.t1"; gene_id "g32"; >--- 870 ---- >! chr2L_829735-838904 AUGUSTUS intron 4850 5239 0.85 - . transcript_id "g32.t1"; gene_id "g32"; >*************** >*** 874,876 **** >! chr2L_829735-838904 AUGUSTUS intron 7645 9170 0.85 - . transcript_id "g32.t1"; gene_id "g32"; >! chr2L_829735-838904 AUGUSTUS CDS 4811 4849 0.84 - 0 transcript_id "g32.t1"; gene_id "g32"; >! chr2L_829735-838904 AUGUSTUS CDS 5240 5556 0.96 - 2 transcript_id "g32.t1"; gene_id "g32"; >--- 874,876 ---- >! chr2L_829735-838904 AUGUSTUS intron 7645 9170 0.86 - . transcript_id "g32.t1"; gene_id "g32"; >! chr2L_829735-838904 AUGUSTUS CDS 4811 4849 0.85 - 0 transcript_id "g32.t1"; gene_id "g32"; >! chr2L_829735-838904 AUGUSTUS CDS 5240 5556 0.97 - 2 transcript_id "g32.t1"; gene_id "g32"; >*************** >*** 879 **** >! chr2L_829735-838904 AUGUSTUS CDS 6812 7644 0.86 - 1 transcript_id "g32.t1"; gene_id "g32"; >--- 879 ---- >! chr2L_829735-838904 AUGUSTUS CDS 6812 7644 0.87 - 1 transcript_id "g32.t1"; gene_id "g32"; >*************** >*** 911,913 **** >! chr2L_1037923-1047607 AUGUSTUS gene 1 500 1 + . g33 >! chr2L_1037923-1047607 AUGUSTUS transcript 1 500 1 + . g33.t1 >! chr2L_1037923-1047607 AUGUSTUS CDS 1 500 1 + 2 transcript_id "g33.t1"; gene_id "g33"; >--- 911,913 ---- >! chr2L_1037923-1047607 AUGUSTUS gene 1 500 0.98 + . g33 >! chr2L_1037923-1047607 AUGUSTUS transcript 1 500 0.98 + . g33.t1 >! chr2L_1037923-1047607 AUGUSTUS CDS 1 500 0.98 + 2 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 938,939 **** >! chr2L_1080978-1087871 AUGUSTUS gene 267 1894 0.85 + . g34 >! chr2L_1080978-1087871 AUGUSTUS transcript 267 1894 0.85 + . g34.t1 >--- 938,939 ---- >! chr2L_1080978-1087871 AUGUSTUS gene 267 1894 0.92 + . g34 >! chr2L_1080978-1087871 AUGUSTUS transcript 267 1894 0.92 + . g34.t1 >*************** >*** 944,945 **** >! chr2L_1080978-1087871 AUGUSTUS intron 1689 1811 0.97 + . transcript_id "g34.t1"; gene_id "g34"; >! chr2L_1080978-1087871 AUGUSTUS CDS 267 450 0.88 + 0 transcript_id "g34.t1"; gene_id "g34"; >--- 944,945 ---- >! chr2L_1080978-1087871 AUGUSTUS intron 1689 1811 1 + . transcript_id "g34.t1"; gene_id "g34"; >! chr2L_1080978-1087871 AUGUSTUS CDS 267 450 0.92 + 0 transcript_id "g34.t1"; gene_id "g34"; >*************** >*** 948,949 **** >! chr2L_1080978-1087871 AUGUSTUS CDS 1143 1688 0.98 + 2 transcript_id "g34.t1"; gene_id "g34"; >! chr2L_1080978-1087871 AUGUSTUS CDS 1812 1894 0.97 + 2 transcript_id "g34.t1"; gene_id "g34"; >--- 948,949 ---- >! chr2L_1080978-1087871 AUGUSTUS CDS 1143 1688 1 + 2 transcript_id "g34.t1"; gene_id "g34"; >! chr2L_1080978-1087871 AUGUSTUS CDS 1812 1894 1 + 2 transcript_id "g34.t1"; gene_id "g34"; >*************** >*** 959,960 **** >! chr2L_1080978-1087871 AUGUSTUS gene 3042 6894 0.6 - . g35 >! chr2L_1080978-1087871 AUGUSTUS transcript 3042 6894 0.6 - . g35.t1 >--- 959,960 ---- >! chr2L_1080978-1087871 AUGUSTUS gene 3042 6894 0.61 - . g35 >! chr2L_1080978-1087871 AUGUSTUS transcript 3042 6894 0.61 - . g35.t1 >*************** >*** 963 **** >! chr2L_1080978-1087871 AUGUSTUS intron 4160 4217 0.63 - . transcript_id "g35.t1"; gene_id "g35"; >--- 963 ---- >! chr2L_1080978-1087871 AUGUSTUS intron 4160 4217 0.61 - . transcript_id "g35.t1"; gene_id "g35"; >*************** >*** 966 **** >! chr2L_1080978-1087871 AUGUSTUS intron 4885 4949 0.96 - . transcript_id "g35.t1"; gene_id "g35"; >--- 966 ---- >! chr2L_1080978-1087871 AUGUSTUS intron 4885 4949 0.98 - . transcript_id "g35.t1"; gene_id "g35"; >*************** >*** 970 **** >! chr2L_1080978-1087871 AUGUSTUS CDS 4218 4332 0.63 - 0 transcript_id "g35.t1"; gene_id "g35"; >--- 970 ---- >! chr2L_1080978-1087871 AUGUSTUS CDS 4218 4332 0.61 - 0 transcript_id "g35.t1"; gene_id "g35"; >*************** >*** 973 **** >! chr2L_1080978-1087871 AUGUSTUS CDS 4950 5049 0.96 - 0 transcript_id "g35.t1"; gene_id "g35"; >--- 973 ---- >! chr2L_1080978-1087871 AUGUSTUS CDS 4950 5049 0.98 - 0 transcript_id "g35.t1"; gene_id "g35"; >*************** >*** 997 **** >! chr2L_1111430-1120120 AUGUSTUS intron 1 76 0.81 + . transcript_id "g36.t1"; gene_id "g36"; >--- 997 ---- >! chr2L_1111430-1120120 AUGUSTUS intron 1 76 0.85 + . transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1000 **** >! chr2L_1111430-1120120 AUGUSTUS intron 1176 1774 0.67 + . transcript_id "g36.t1"; gene_id "g36"; >--- 1000 ---- >! chr2L_1111430-1120120 AUGUSTUS intron 1176 1774 0.76 + . transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1002 **** >! chr2L_1111430-1120120 AUGUSTUS CDS 77 538 0.81 + 0 transcript_id "g36.t1"; gene_id "g36"; >--- 1002 ---- >! chr2L_1111430-1120120 AUGUSTUS CDS 77 538 0.85 + 0 transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1004 **** >! chr2L_1111430-1120120 AUGUSTUS CDS 1077 1175 0.67 + 0 transcript_id "g36.t1"; gene_id "g36"; >--- 1004 ---- >! chr2L_1111430-1120120 AUGUSTUS CDS 1077 1175 0.76 + 0 transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1006 **** >! chr2L_1111430-1120120 AUGUSTUS CDS 2130 2353 0.48 + 2 transcript_id "g36.t1"; gene_id "g36"; >--- 1006 ---- >! chr2L_1111430-1120120 AUGUSTUS CDS 2130 2353 0.41 + 2 transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1021 **** >! chr2L_1111430-1120120 AUGUSTUS intron 5262 6014 0.92 - . transcript_id "g37.t1"; gene_id "g37"; >--- 1021 ---- >! chr2L_1111430-1120120 AUGUSTUS intron 5262 6014 0.91 - . transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1023,1024 **** >! chr2L_1111430-1120120 AUGUSTUS CDS 5012 5261 1 - 1 transcript_id "g37.t1"; gene_id "g37"; >! chr2L_1111430-1120120 AUGUSTUS CDS 6015 6070 0.91 - 0 transcript_id "g37.t1"; gene_id "g37"; >--- 1023,1024 ---- >! chr2L_1111430-1120120 AUGUSTUS CDS 5012 5261 0.99 - 1 transcript_id "g37.t1"; gene_id "g37"; >! chr2L_1111430-1120120 AUGUSTUS CDS 6015 6070 0.92 - 0 transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1041,1042 **** >! chr2L_1142814-1149445 AUGUSTUS gene 558 4262 0.56 + . g38 >! chr2L_1142814-1149445 AUGUSTUS transcript 558 4262 0.56 + . g38.t1 >--- 1041,1042 ---- >! chr2L_1142814-1149445 AUGUSTUS gene 558 4262 0.58 + . g38 >! chr2L_1142814-1149445 AUGUSTUS transcript 558 4262 0.58 + . g38.t1 >*************** >*** 1047,1048 **** >! chr2L_1142814-1149445 AUGUSTUS CDS 558 597 0.63 + 0 transcript_id "g38.t1"; gene_id "g38"; >! chr2L_1142814-1149445 AUGUSTUS CDS 2631 3659 0.9 + 2 transcript_id "g38.t1"; gene_id "g38"; >--- 1047,1048 ---- >! chr2L_1142814-1149445 AUGUSTUS CDS 558 597 0.61 + 0 transcript_id "g38.t1"; gene_id "g38"; >! chr2L_1142814-1149445 AUGUSTUS CDS 2631 3659 0.94 + 2 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1091,1092 **** >! chr2L_1167203-1170009 AUGUSTUS gene 41 2583 0.97 - . g40 >! chr2L_1167203-1170009 AUGUSTUS transcript 41 2583 0.97 - . g40.t1 >--- 1091,1092 ---- >! chr2L_1167203-1170009 AUGUSTUS gene 41 2583 0.95 - . g40 >! chr2L_1167203-1170009 AUGUSTUS transcript 41 2583 0.95 - . g40.t1 >*************** >*** 1095 **** >! chr2L_1167203-1170009 AUGUSTUS intron 1437 1492 0.99 - . transcript_id "g40.t1"; gene_id "g40"; >--- 1095 ---- >! chr2L_1167203-1170009 AUGUSTUS intron 1437 1492 0.98 - . transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1097,1100 **** >! chr2L_1167203-1170009 AUGUSTUS CDS 41 752 0.98 - 1 transcript_id "g40.t1"; gene_id "g40"; >! chr2L_1167203-1170009 AUGUSTUS CDS 810 1436 0.99 - 1 transcript_id "g40.t1"; gene_id "g40"; >! chr2L_1167203-1170009 AUGUSTUS CDS 1493 2359 0.99 - 1 transcript_id "g40.t1"; gene_id "g40"; >! chr2L_1167203-1170009 AUGUSTUS CDS 2426 2583 1 - 0 transcript_id "g40.t1"; gene_id "g40"; >--- 1097,1100 ---- >! chr2L_1167203-1170009 AUGUSTUS CDS 41 752 0.99 - 1 transcript_id "g40.t1"; gene_id "g40"; >! chr2L_1167203-1170009 AUGUSTUS CDS 810 1436 0.98 - 1 transcript_id "g40.t1"; gene_id "g40"; >! chr2L_1167203-1170009 AUGUSTUS CDS 1493 2359 0.98 - 1 transcript_id "g40.t1"; gene_id "g40"; >! chr2L_1167203-1170009 AUGUSTUS CDS 2426 2583 0.98 - 0 transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1146,1147 **** >! chr2L_1175285-1182390 AUGUSTUS gene 1 2088 0.63 + . g41 >! chr2L_1175285-1182390 AUGUSTUS transcript 1 2088 0.63 + . g41.t1 >--- 1146,1147 ---- >! chr2L_1175285-1182390 AUGUSTUS gene 1 2088 0.72 + . g41 >! chr2L_1175285-1182390 AUGUSTUS transcript 1 2088 0.72 + . g41.t1 >*************** >*** 1151,1152 **** >! chr2L_1175285-1182390 AUGUSTUS intron 1908 1971 0.9 + . transcript_id "g41.t1"; gene_id "g41"; >! chr2L_1175285-1182390 AUGUSTUS CDS 1 239 0.72 + 1 transcript_id "g41.t1"; gene_id "g41"; >--- 1151,1152 ---- >! chr2L_1175285-1182390 AUGUSTUS intron 1908 1971 0.89 + . transcript_id "g41.t1"; gene_id "g41"; >! chr2L_1175285-1182390 AUGUSTUS CDS 1 239 0.81 + 1 transcript_id "g41.t1"; gene_id "g41"; >*************** >*** 1156 **** >! chr2L_1175285-1182390 AUGUSTUS CDS 1972 2088 0.9 + 0 transcript_id "g41.t1"; gene_id "g41"; >--- 1156 ---- >! chr2L_1175285-1182390 AUGUSTUS CDS 1972 2088 0.89 + 0 transcript_id "g41.t1"; gene_id "g41"; >*************** >*** 1168,1169 **** >! chr2L_1175285-1182390 AUGUSTUS gene 2666 7002 0.43 + . g42 >! chr2L_1175285-1182390 AUGUSTUS transcript 2666 7002 0.43 + . g42.t1 >--- 1168,1169 ---- >! chr2L_1175285-1182390 AUGUSTUS gene 2666 7002 0.37 + . g42 >! chr2L_1175285-1182390 AUGUSTUS transcript 2666 7002 0.37 + . g42.t1 >*************** >*** 1173,1174 **** >! chr2L_1175285-1182390 AUGUSTUS intron 3786 3842 0.99 + . transcript_id "g42.t1"; gene_id "g42"; >! chr2L_1175285-1182390 AUGUSTUS intron 3913 4928 0.43 + . transcript_id "g42.t1"; gene_id "g42"; >--- 1173,1174 ---- >! chr2L_1175285-1182390 AUGUSTUS intron 3786 3842 1 + . transcript_id "g42.t1"; gene_id "g42"; >! chr2L_1175285-1182390 AUGUSTUS intron 3913 4928 0.37 + . transcript_id "g42.t1"; gene_id "g42"; >*************** >*** 1182,1183 **** >! chr2L_1175285-1182390 AUGUSTUS CDS 3843 3912 0.95 + 0 transcript_id "g42.t1"; gene_id "g42"; >! chr2L_1175285-1182390 AUGUSTUS CDS 4929 5165 0.99 + 2 transcript_id "g42.t1"; gene_id "g42"; >--- 1182,1183 ---- >! chr2L_1175285-1182390 AUGUSTUS CDS 3843 3912 0.94 + 0 transcript_id "g42.t1"; gene_id "g42"; >! chr2L_1175285-1182390 AUGUSTUS CDS 4929 5165 1 + 2 transcript_id "g42.t1"; gene_id "g42"; >*************** >*** 1213,1214 **** >! chr2L_1235068-1247145 AUGUSTUS gene 5001 7078 0.99 + . g43 >! chr2L_1235068-1247145 AUGUSTUS transcript 5001 7078 0.99 + . g43.t1 >--- 1213,1214 ---- >! chr2L_1235068-1247145 AUGUSTUS gene 5001 7078 1 + . g43 >! chr2L_1235068-1247145 AUGUSTUS transcript 5001 7078 1 + . g43.t1 >*************** >*** 1218 **** >! chr2L_1235068-1247145 AUGUSTUS CDS 5984 7078 0.99 + 0 transcript_id "g43.t1"; gene_id "g43"; >--- 1218 ---- >! chr2L_1235068-1247145 AUGUSTUS CDS 5984 7078 1 + 0 transcript_id "g43.t1"; gene_id "g43"; >*************** >*** 1250,1252 **** >! chr2L_1355147-1366657 AUGUSTUS gene 1 4484 0.46 - . g44 >! chr2L_1355147-1366657 AUGUSTUS transcript 1 4484 0.46 - . g44.t1 >! chr2L_1355147-1366657 AUGUSTUS intron 484 4025 0.59 - . transcript_id "g44.t1"; gene_id "g44"; >--- 1250,1252 ---- >! chr2L_1355147-1366657 AUGUSTUS gene 1 4484 0.44 - . g44 >! chr2L_1355147-1366657 AUGUSTUS transcript 1 4484 0.44 - . g44.t1 >! chr2L_1355147-1366657 AUGUSTUS intron 484 4025 0.61 - . transcript_id "g44.t1"; gene_id "g44"; >*************** >*** 1254 **** >! chr2L_1355147-1366657 AUGUSTUS intron 4272 4320 0.95 - . transcript_id "g44.t1"; gene_id "g44"; >--- 1254 ---- >! chr2L_1355147-1366657 AUGUSTUS intron 4272 4320 0.99 - . transcript_id "g44.t1"; gene_id "g44"; >*************** >*** 1256,1258 **** >! chr2L_1355147-1366657 AUGUSTUS CDS 4026 4124 0.64 - 2 transcript_id "g44.t1"; gene_id "g44"; >! chr2L_1355147-1366657 AUGUSTUS CDS 4186 4271 0.95 - 1 transcript_id "g44.t1"; gene_id "g44"; >! chr2L_1355147-1366657 AUGUSTUS CDS 4321 4484 0.74 - 0 transcript_id "g44.t1"; gene_id "g44"; >--- 1256,1258 ---- >! chr2L_1355147-1366657 AUGUSTUS CDS 4026 4124 0.63 - 2 transcript_id "g44.t1"; gene_id "g44"; >! chr2L_1355147-1366657 AUGUSTUS CDS 4186 4271 0.99 - 1 transcript_id "g44.t1"; gene_id "g44"; >! chr2L_1355147-1366657 AUGUSTUS CDS 4321 4484 0.73 - 0 transcript_id "g44.t1"; gene_id "g44"; >*************** >*** 1267,1268 **** >! chr2L_1355147-1366657 AUGUSTUS gene 5001 6511 0.98 - . g45 >! chr2L_1355147-1366657 AUGUSTUS transcript 5001 6511 0.98 - . g45.t1 >--- 1267,1268 ---- >! chr2L_1355147-1366657 AUGUSTUS gene 5001 6511 0.97 - . g45 >! chr2L_1355147-1366657 AUGUSTUS transcript 5001 6511 0.97 - . g45.t1 >*************** >*** 1275 **** >! chr2L_1355147-1366657 AUGUSTUS CDS 5001 5227 1 - 2 transcript_id "g45.t1"; gene_id "g45"; >--- 1275 ---- >! chr2L_1355147-1366657 AUGUSTUS CDS 5001 5227 0.99 - 2 transcript_id "g45.t1"; gene_id "g45"; >*************** >*** 1319,1320 **** >! chr2L_1711034-1716329 AUGUSTUS gene 719 4523 0.53 - . g47 >! chr2L_1711034-1716329 AUGUSTUS transcript 719 4523 0.53 - . g47.t1 >--- 1319,1320 ---- >! chr2L_1711034-1716329 AUGUSTUS gene 719 4523 0.6 - . g47 >! chr2L_1711034-1716329 AUGUSTUS transcript 719 4523 0.6 - . g47.t1 >*************** >*** 1327 **** >! chr2L_1711034-1716329 AUGUSTUS intron 3496 4118 0.58 - . transcript_id "g47.t1"; gene_id "g47"; >--- 1327 ---- >! chr2L_1711034-1716329 AUGUSTUS intron 3496 4118 0.64 - . transcript_id "g47.t1"; gene_id "g47"; >*************** >*** 1333,1334 **** >! chr2L_1711034-1716329 AUGUSTUS CDS 3140 3495 0.58 - 0 transcript_id "g47.t1"; gene_id "g47"; >! chr2L_1711034-1716329 AUGUSTUS CDS 4119 4523 0.62 - 0 transcript_id "g47.t1"; gene_id "g47"; >--- 1333,1334 ---- >! chr2L_1711034-1716329 AUGUSTUS CDS 3140 3495 0.64 - 0 transcript_id "g47.t1"; gene_id "g47"; >! chr2L_1711034-1716329 AUGUSTUS CDS 4119 4523 0.65 - 0 transcript_id "g47.t1"; gene_id "g47"; >*************** >*** 1373,1374 **** >! chr2L_1730466-1736982 AUGUSTUS gene 938 1798 0.76 - . g49 >! chr2L_1730466-1736982 AUGUSTUS transcript 938 1798 0.76 - . g49.t1 >--- 1373,1374 ---- >! chr2L_1730466-1736982 AUGUSTUS gene 938 1798 0.83 - . g49 >! chr2L_1730466-1736982 AUGUSTUS transcript 938 1798 0.83 - . g49.t1 >*************** >*** 1377 **** >! chr2L_1730466-1736982 AUGUSTUS intron 1616 1678 0.92 - . transcript_id "g49.t1"; gene_id "g49"; >--- 1377 ---- >! chr2L_1730466-1736982 AUGUSTUS intron 1616 1678 0.97 - . transcript_id "g49.t1"; gene_id "g49"; >*************** >*** 1379,1380 **** >! chr2L_1730466-1736982 AUGUSTUS CDS 1415 1615 0.93 - 0 transcript_id "g49.t1"; gene_id "g49"; >! chr2L_1730466-1736982 AUGUSTUS CDS 1679 1798 0.83 - 0 transcript_id "g49.t1"; gene_id "g49"; >--- 1379,1380 ---- >! chr2L_1730466-1736982 AUGUSTUS CDS 1415 1615 0.97 - 0 transcript_id "g49.t1"; gene_id "g49"; >! chr2L_1730466-1736982 AUGUSTUS CDS 1679 1798 0.85 - 0 transcript_id "g49.t1"; gene_id "g49"; >*************** >*** 1402,1403 **** >! chr2L_1980930-1982119 AUGUSTUS gene 363 998 0.76 + . g50 >! chr2L_1980930-1982119 AUGUSTUS transcript 363 998 0.76 + . g50.t1 >--- 1402,1403 ---- >! chr2L_1980930-1982119 AUGUSTUS gene 363 998 0.85 + . g50 >! chr2L_1980930-1982119 AUGUSTUS transcript 363 998 0.85 + . g50.t1 >*************** >*** 1407 **** >! chr2L_1980930-1982119 AUGUSTUS CDS 363 654 0.76 + 0 transcript_id "g50.t1"; gene_id "g50"; >--- 1407 ---- >! chr2L_1980930-1982119 AUGUSTUS CDS 363 654 0.85 + 0 transcript_id "g50.t1"; gene_id "g50"; >*************** >*** 1430,1431 **** >! chr2L_2157211-2165491 AUGUSTUS gene 955 3281 0.49 - . g51 >! chr2L_2157211-2165491 AUGUSTUS transcript 955 3281 0.49 - . g51.t1 >--- 1430,1431 ---- >! chr2L_2157211-2165491 AUGUSTUS gene 955 3281 0.47 - . g51 >! chr2L_2157211-2165491 AUGUSTUS transcript 955 3281 0.47 - . g51.t1 >*************** >*** 1437 **** >! chr2L_2157211-2165491 AUGUSTUS CDS 2102 3281 0.49 - 0 transcript_id "g51.t1"; gene_id "g51"; >--- 1437 ---- >! chr2L_2157211-2165491 AUGUSTUS CDS 2102 3281 0.47 - 0 transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 1472,1473 **** >! chr2L_2216827-2221869 AUGUSTUS gene 1 3436 0.57 + . g52 >! chr2L_2216827-2221869 AUGUSTUS transcript 1 3436 0.57 + . g52.t1 >--- 1472,1473 ---- >! chr2L_2216827-2221869 AUGUSTUS gene 1 3436 0.46 + . g52 >! chr2L_2216827-2221869 AUGUSTUS transcript 1 3436 0.46 + . g52.t1 >*************** >*** 1483 **** >! chr2L_2216827-2221869 AUGUSTUS CDS 2951 3436 0.57 + 0 transcript_id "g52.t1"; gene_id "g52"; >--- 1483 ---- >! chr2L_2216827-2221869 AUGUSTUS CDS 2951 3436 0.46 + 0 transcript_id "g52.t1"; gene_id "g52"; >*************** >*** 1512,1513 **** >! chr2L_2225520-2226376 AUGUSTUS intron 483 539 0.76 - . transcript_id "g53.t1"; gene_id "g53"; >! chr2L_2225520-2226376 AUGUSTUS CDS 279 482 0.83 - 0 transcript_id "g53.t1"; gene_id "g53"; >--- 1512,1513 ---- >! chr2L_2225520-2226376 AUGUSTUS intron 483 539 0.75 - . transcript_id "g53.t1"; gene_id "g53"; >! chr2L_2225520-2226376 AUGUSTUS CDS 279 482 0.86 - 0 transcript_id "g53.t1"; gene_id "g53"; >*************** >*** 1560,1561 **** >! chr2L_2485346-2492775 AUGUSTUS gene 5001 7430 0.96 - . g55 >! chr2L_2485346-2492775 AUGUSTUS transcript 5001 7430 0.96 - . g55.t1 >--- 1560,1561 ---- >! chr2L_2485346-2492775 AUGUSTUS gene 5001 7430 0.95 - . g55 >! chr2L_2485346-2492775 AUGUSTUS transcript 5001 7430 0.95 - . g55.t1 >*************** >*** 1566 **** >! chr2L_2485346-2492775 AUGUSTUS intron 7074 7430 0.96 - . transcript_id "g55.t1"; gene_id "g55"; >--- 1566 ---- >! chr2L_2485346-2492775 AUGUSTUS intron 7074 7430 0.95 - . transcript_id "g55.t1"; gene_id "g55"; >*************** >*** 1570 **** >! chr2L_2485346-2492775 AUGUSTUS CDS 6914 7073 1 - 2 transcript_id "g55.t1"; gene_id "g55"; >--- 1570 ---- >! chr2L_2485346-2492775 AUGUSTUS CDS 6914 7073 0.99 - 2 transcript_id "g55.t1"; gene_id "g55"; >*************** >*** 1597,1599 **** >! chr2L_2492776-2496711 AUGUSTUS gene 1 3922 0.54 + . g56 >! chr2L_2492776-2496711 AUGUSTUS transcript 1 3922 0.54 + . g56.t1 >! chr2L_2492776-2496711 AUGUSTUS intron 1 2598 0.54 + . transcript_id "g56.t1"; gene_id "g56"; >--- 1597,1599 ---- >! chr2L_2492776-2496711 AUGUSTUS gene 1 3922 0.59 + . g56 >! chr2L_2492776-2496711 AUGUSTUS transcript 1 3922 0.59 + . g56.t1 >! chr2L_2492776-2496711 AUGUSTUS intron 1 2598 0.59 + . transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 1652,1653 **** >! chr2L_2765909-2767213 AUGUSTUS gene 407 1182 0.99 + . g58 >! chr2L_2765909-2767213 AUGUSTUS transcript 407 1182 0.99 + . g58.t1 >--- 1652,1653 ---- >! chr2L_2765909-2767213 AUGUSTUS gene 407 1182 1 + . g58 >! chr2L_2765909-2767213 AUGUSTUS transcript 407 1182 1 + . g58.t1 >*************** >*** 1657 **** >! chr2L_2765909-2767213 AUGUSTUS CDS 859 1182 0.99 + 0 transcript_id "g58.t1"; gene_id "g58"; >--- 1657 ---- >! chr2L_2765909-2767213 AUGUSTUS CDS 859 1182 1 + 0 transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 1709,1710 **** >! chr2L_2969782-2972678 AUGUSTUS gene 211 2516 0.8 - . g60 >! chr2L_2969782-2972678 AUGUSTUS transcript 211 2516 0.8 - . g60.t1 >--- 1709,1710 ---- >! chr2L_2969782-2972678 AUGUSTUS gene 211 2516 0.65 - . g60 >! chr2L_2969782-2972678 AUGUSTUS transcript 211 2516 0.65 - . g60.t1 >*************** >*** 1712,1717 **** >! chr2L_2969782-2972678 AUGUSTUS intron 871 932 0.98 - . transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS intron 1274 1335 0.96 - . transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS intron 1408 1474 0.99 - . transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS CDS 211 870 0.98 - 0 transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS CDS 933 1273 0.84 - 2 transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS CDS 1336 1407 0.96 - 2 transcript_id "g60.t1"; gene_id "g60"; >--- 1712,1717 ---- >! chr2L_2969782-2972678 AUGUSTUS intron 871 932 1 - . transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS intron 1274 1335 0.94 - . transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS intron 1408 1474 0.94 - . transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS CDS 211 870 1 - 0 transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS CDS 933 1273 0.7 - 2 transcript_id "g60.t1"; gene_id "g60"; >! chr2L_2969782-2972678 AUGUSTUS CDS 1336 1407 0.94 - 2 transcript_id "g60.t1"; gene_id "g60"; >*************** >*** 1745,1747 **** >! chr2L_2972679-2974891 AUGUSTUS gene 1 1926 0.99 + . g61 >! chr2L_2972679-2974891 AUGUSTUS transcript 1 1926 0.99 + . g61.t1 >! chr2L_2972679-2974891 AUGUSTUS intron 1 487 0.99 + . transcript_id "g61.t1"; gene_id "g61"; >--- 1745,1747 ---- >! chr2L_2972679-2974891 AUGUSTUS gene 1 1926 1 + . g61 >! chr2L_2972679-2974891 AUGUSTUS transcript 1 1926 1 + . g61.t1 >! chr2L_2972679-2974891 AUGUSTUS intron 1 487 1 + . transcript_id "g61.t1"; gene_id "g61"; >*************** >*** 1749 **** >! chr2L_2972679-2974891 AUGUSTUS CDS 488 690 0.99 + 2 transcript_id "g61.t1"; gene_id "g61"; >--- 1749 ---- >! chr2L_2972679-2974891 AUGUSTUS CDS 488 690 1 + 2 transcript_id "g61.t1"; gene_id "g61"; >*************** >*** 1778,1779 **** >! chr2L_2983726-2991623 AUGUSTUS gene 1 3795 0.12 - . g62 >! chr2L_2983726-2991623 AUGUSTUS transcript 1 3795 0.12 - . g62.t1 >--- 1778,1779 ---- >! chr2L_2983726-2991623 AUGUSTUS gene 1 3795 0.15 - . g62 >! chr2L_2983726-2991623 AUGUSTUS transcript 1 3795 0.15 - . g62.t1 >*************** >*** 1783 **** >! chr2L_2983726-2991623 AUGUSTUS intron 2426 3786 0.12 - . transcript_id "g62.t1"; gene_id "g62"; >--- 1783 ---- >! chr2L_2983726-2991623 AUGUSTUS intron 2426 3786 0.15 - . transcript_id "g62.t1"; gene_id "g62"; >*************** >*** 1787,1788 **** >! chr2L_2983726-2991623 AUGUSTUS CDS 1916 2425 0.91 - 0 transcript_id "g62.t1"; gene_id "g62"; >! chr2L_2983726-2991623 AUGUSTUS CDS 3787 3795 0.12 - 0 transcript_id "g62.t1"; gene_id "g62"; >--- 1787,1788 ---- >! chr2L_2983726-2991623 AUGUSTUS CDS 1916 2425 0.96 - 0 transcript_id "g62.t1"; gene_id "g62"; >! chr2L_2983726-2991623 AUGUSTUS CDS 3787 3795 0.15 - 0 transcript_id "g62.t1"; gene_id "g62"; >*************** >*** 1821,1822 **** >! chr2L_2983726-2991623 AUGUSTUS gene 6342 7898 0.75 - . g64 >! chr2L_2983726-2991623 AUGUSTUS transcript 6342 7898 0.75 - . g64.t1 >--- 1821,1822 ---- >! chr2L_2983726-2991623 AUGUSTUS gene 6342 7898 0.72 - . g64 >! chr2L_2983726-2991623 AUGUSTUS transcript 6342 7898 0.72 - . g64.t1 >*************** >*** 1825,1827 **** >! chr2L_2983726-2991623 AUGUSTUS intron 6875 6935 0.99 - . transcript_id "g64.t1"; gene_id "g64"; >! chr2L_2983726-2991623 AUGUSTUS intron 7342 7399 0.99 - . transcript_id "g64.t1"; gene_id "g64"; >! chr2L_2983726-2991623 AUGUSTUS intron 7554 7609 0.76 - . transcript_id "g64.t1"; gene_id "g64"; >--- 1825,1827 ---- >! chr2L_2983726-2991623 AUGUSTUS intron 6875 6935 1 - . transcript_id "g64.t1"; gene_id "g64"; >! chr2L_2983726-2991623 AUGUSTUS intron 7342 7399 0.98 - . transcript_id "g64.t1"; gene_id "g64"; >! chr2L_2983726-2991623 AUGUSTUS intron 7554 7609 0.72 - . transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 1830,1832 **** >! chr2L_2983726-2991623 AUGUSTUS CDS 6936 7341 0.99 - 1 transcript_id "g64.t1"; gene_id "g64"; >! chr2L_2983726-2991623 AUGUSTUS CDS 7400 7553 0.77 - 2 transcript_id "g64.t1"; gene_id "g64"; >! chr2L_2983726-2991623 AUGUSTUS CDS 7610 7898 0.96 - 0 transcript_id "g64.t1"; gene_id "g64"; >--- 1830,1832 ---- >! chr2L_2983726-2991623 AUGUSTUS CDS 6936 7341 1 - 1 transcript_id "g64.t1"; gene_id "g64"; >! chr2L_2983726-2991623 AUGUSTUS CDS 7400 7553 0.72 - 2 transcript_id "g64.t1"; gene_id "g64"; >! chr2L_2983726-2991623 AUGUSTUS CDS 7610 7898 0.98 - 0 transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 1853,1854 **** >! chr2L_3016786-3023168 AUGUSTUS gene 1 1105 0.9 - . g65 >! chr2L_3016786-3023168 AUGUSTUS transcript 1 1105 0.9 - . g65.t1 >--- 1853,1854 ---- >! chr2L_3016786-3023168 AUGUSTUS gene 1 1105 0.93 - . g65 >! chr2L_3016786-3023168 AUGUSTUS transcript 1 1105 0.93 - . g65.t1 >*************** >*** 1856 **** >! chr2L_3016786-3023168 AUGUSTUS intron 329 393 0.9 - . transcript_id "g65.t1"; gene_id "g65"; >--- 1856 ---- >! chr2L_3016786-3023168 AUGUSTUS intron 329 393 0.94 - . transcript_id "g65.t1"; gene_id "g65"; >*************** >*** 1858 **** >! chr2L_3016786-3023168 AUGUSTUS intron 941 994 1 - . transcript_id "g65.t1"; gene_id "g65"; >--- 1858 ---- >! chr2L_3016786-3023168 AUGUSTUS intron 941 994 0.99 - . transcript_id "g65.t1"; gene_id "g65"; >*************** >*** 1860 **** >! chr2L_3016786-3023168 AUGUSTUS CDS 141 328 0.9 - 2 transcript_id "g65.t1"; gene_id "g65"; >--- 1860 ---- >! chr2L_3016786-3023168 AUGUSTUS CDS 141 328 0.94 - 2 transcript_id "g65.t1"; gene_id "g65"; >*************** >*** 1863 **** >! chr2L_3016786-3023168 AUGUSTUS CDS 995 1105 1 - 0 transcript_id "g65.t1"; gene_id "g65"; >--- 1863 ---- >! chr2L_3016786-3023168 AUGUSTUS CDS 995 1105 0.99 - 0 transcript_id "g65.t1"; gene_id "g65"; >*************** >*** 1872,1873 **** >! chr2L_3016786-3023168 AUGUSTUS gene 2165 4442 0.92 + . g66 >! chr2L_3016786-3023168 AUGUSTUS transcript 2165 4442 0.92 + . g66.t1 >--- 1872,1873 ---- >! chr2L_3016786-3023168 AUGUSTUS gene 2165 4442 0.88 + . g66 >! chr2L_3016786-3023168 AUGUSTUS transcript 2165 4442 0.88 + . g66.t1 >*************** >*** 1875,1878 **** >! chr2L_3016786-3023168 AUGUSTUS intron 2619 2724 0.97 + . transcript_id "g66.t1"; gene_id "g66"; >! chr2L_3016786-3023168 AUGUSTUS intron 3145 3201 0.95 + . transcript_id "g66.t1"; gene_id "g66"; >! chr2L_3016786-3023168 AUGUSTUS CDS 2165 2618 0.96 + 0 transcript_id "g66.t1"; gene_id "g66"; >! chr2L_3016786-3023168 AUGUSTUS CDS 2725 3144 0.92 + 2 transcript_id "g66.t1"; gene_id "g66"; >--- 1875,1878 ---- >! chr2L_3016786-3023168 AUGUSTUS intron 2619 2724 0.99 + . transcript_id "g66.t1"; gene_id "g66"; >! chr2L_3016786-3023168 AUGUSTUS intron 3145 3201 0.89 + . transcript_id "g66.t1"; gene_id "g66"; >! chr2L_3016786-3023168 AUGUSTUS CDS 2165 2618 0.99 + 0 transcript_id "g66.t1"; gene_id "g66"; >! chr2L_3016786-3023168 AUGUSTUS CDS 2725 3144 0.88 + 2 transcript_id "g66.t1"; gene_id "g66"; >*************** >*** 1892,1893 **** >! chr2L_3016786-3023168 AUGUSTUS gene 5001 6164 0.45 - . g67 >! chr2L_3016786-3023168 AUGUSTUS transcript 5001 6164 0.45 - . g67.t1 >--- 1892,1893 ---- >! chr2L_3016786-3023168 AUGUSTUS gene 5001 6164 0.4 - . g67 >! chr2L_3016786-3023168 AUGUSTUS transcript 5001 6164 0.4 - . g67.t1 >*************** >*** 1897 **** >! chr2L_3016786-3023168 AUGUSTUS CDS 5638 6164 0.45 - 0 transcript_id "g67.t1"; gene_id "g67"; >--- 1897 ---- >! chr2L_3016786-3023168 AUGUSTUS CDS 5638 6164 0.4 - 0 transcript_id "g67.t1"; gene_id "g67"; >*************** >*** 1924,1925 **** >! chr2L_3026361-3032366 AUGUSTUS gene 245 2727 0.85 - . g68 >! chr2L_3026361-3032366 AUGUSTUS transcript 245 2727 0.85 - . g68.t1 >--- 1924,1925 ---- >! chr2L_3026361-3032366 AUGUSTUS gene 245 2727 0.91 - . g68 >! chr2L_3026361-3032366 AUGUSTUS transcript 245 2727 0.91 - . g68.t1 >*************** >*** 1930 **** >! chr2L_3026361-3032366 AUGUSTUS intron 2647 2703 0.85 - . transcript_id "g68.t1"; gene_id "g68"; >--- 1930 ---- >! chr2L_3026361-3032366 AUGUSTUS intron 2647 2703 0.91 - . transcript_id "g68.t1"; gene_id "g68"; >*************** >*** 1934,1935 **** >! chr2L_3026361-3032366 AUGUSTUS CDS 2006 2646 0.85 - 0 transcript_id "g68.t1"; gene_id "g68"; >! chr2L_3026361-3032366 AUGUSTUS CDS 2704 2727 0.85 - 0 transcript_id "g68.t1"; gene_id "g68"; >--- 1934,1935 ---- >! chr2L_3026361-3032366 AUGUSTUS CDS 2006 2646 0.91 - 0 transcript_id "g68.t1"; gene_id "g68"; >! chr2L_3026361-3032366 AUGUSTUS CDS 2704 2727 0.91 - 0 transcript_id "g68.t1"; gene_id "g68"; >*************** >*** 1948,1949 **** >! chr2L_3026361-3032366 AUGUSTUS gene 3060 5774 0.54 + . g69 >! chr2L_3026361-3032366 AUGUSTUS transcript 3060 5774 0.54 + . g69.t1 >--- 1948,1949 ---- >! chr2L_3026361-3032366 AUGUSTUS gene 3060 5774 0.6 + . g69 >! chr2L_3026361-3032366 AUGUSTUS transcript 3060 5774 0.6 + . g69.t1 >*************** >*** 1951,1952 **** >! chr2L_3026361-3032366 AUGUSTUS intron 3573 3831 0.54 + . transcript_id "g69.t1"; gene_id "g69"; >! chr2L_3026361-3032366 AUGUSTUS intron 3971 4442 0.73 + . transcript_id "g69.t1"; gene_id "g69"; >--- 1951,1952 ---- >! chr2L_3026361-3032366 AUGUSTUS intron 3573 3831 0.6 + . transcript_id "g69.t1"; gene_id "g69"; >! chr2L_3026361-3032366 AUGUSTUS intron 3971 4442 0.81 + . transcript_id "g69.t1"; gene_id "g69"; >*************** >*** 1955,1957 **** >! chr2L_3026361-3032366 AUGUSTUS CDS 3060 3572 0.76 + 0 transcript_id "g69.t1"; gene_id "g69"; >! chr2L_3026361-3032366 AUGUSTUS CDS 3832 3970 0.54 + 0 transcript_id "g69.t1"; gene_id "g69"; >! chr2L_3026361-3032366 AUGUSTUS CDS 4443 4587 0.99 + 2 transcript_id "g69.t1"; gene_id "g69"; >--- 1955,1957 ---- >! chr2L_3026361-3032366 AUGUSTUS CDS 3060 3572 0.8 + 0 transcript_id "g69.t1"; gene_id "g69"; >! chr2L_3026361-3032366 AUGUSTUS CDS 3832 3970 0.61 + 0 transcript_id "g69.t1"; gene_id "g69"; >! chr2L_3026361-3032366 AUGUSTUS CDS 4443 4587 1 + 2 transcript_id "g69.t1"; gene_id "g69"; >*************** >*** 1991,1992 **** >! chr2L_3326983-3334169 AUGUSTUS gene 954 2643 0.25 + . g70 >! chr2L_3326983-3334169 AUGUSTUS transcript 954 2643 0.25 + . g70.t1 >--- 1991,1992 ---- >! chr2L_3326983-3334169 AUGUSTUS gene 954 2643 0.28 + . g70 >! chr2L_3326983-3334169 AUGUSTUS transcript 954 2643 0.28 + . g70.t1 >*************** >*** 1994,1995 **** >! chr2L_3326983-3334169 AUGUSTUS intron 1024 1090 0.72 + . transcript_id "g70.t1"; gene_id "g70"; >! chr2L_3326983-3334169 AUGUSTUS intron 1325 1570 0.3 + . transcript_id "g70.t1"; gene_id "g70"; >--- 1994,1995 ---- >! chr2L_3326983-3334169 AUGUSTUS intron 1024 1090 0.71 + . transcript_id "g70.t1"; gene_id "g70"; >! chr2L_3326983-3334169 AUGUSTUS intron 1325 1570 0.39 + . transcript_id "g70.t1"; gene_id "g70"; >*************** >*** 1998,2000 **** >! chr2L_3326983-3334169 AUGUSTUS CDS 954 1023 0.85 + 0 transcript_id "g70.t1"; gene_id "g70"; >! chr2L_3326983-3334169 AUGUSTUS CDS 1091 1324 0.34 + 2 transcript_id "g70.t1"; gene_id "g70"; >! chr2L_3326983-3334169 AUGUSTUS CDS 1571 1900 0.35 + 2 transcript_id "g70.t1"; gene_id "g70"; >--- 1998,2000 ---- >! chr2L_3326983-3334169 AUGUSTUS CDS 954 1023 0.84 + 0 transcript_id "g70.t1"; gene_id "g70"; >! chr2L_3326983-3334169 AUGUSTUS CDS 1091 1324 0.4 + 2 transcript_id "g70.t1"; gene_id "g70"; >! chr2L_3326983-3334169 AUGUSTUS CDS 1571 1900 0.42 + 2 transcript_id "g70.t1"; gene_id "g70"; >*************** >*** 2012,2013 **** >! chr2L_3326983-3334169 AUGUSTUS gene 3981 7187 0.69 + . g71 >! chr2L_3326983-3334169 AUGUSTUS transcript 3981 7187 0.69 + . g71.t1 >--- 2012,2013 ---- >! chr2L_3326983-3334169 AUGUSTUS gene 3981 7187 0.65 + . g71 >! chr2L_3326983-3334169 AUGUSTUS transcript 3981 7187 0.65 + . g71.t1 >*************** >*** 2015 **** >! chr2L_3326983-3334169 AUGUSTUS intron 4075 4135 0.94 + . transcript_id "g71.t1"; gene_id "g71"; >--- 2015 ---- >! chr2L_3326983-3334169 AUGUSTUS intron 4075 4135 0.96 + . transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 2018,2023 **** >! chr2L_3326983-3334169 AUGUSTUS intron 4962 5020 0.96 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 5434 5498 0.99 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 5617 6072 0.81 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 6303 6361 0.97 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 6493 6657 1 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 7005 7059 0.97 + . transcript_id "g71.t1"; gene_id "g71"; >--- 2018,2023 ---- >! chr2L_3326983-3334169 AUGUSTUS intron 4962 5020 0.94 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 5434 5498 1 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 5617 6072 0.76 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 6303 6361 0.98 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 6493 6657 0.98 + . transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS intron 7005 7059 0.99 + . transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 2025 **** >! chr2L_3326983-3334169 AUGUSTUS CDS 4136 4365 0.94 + 2 transcript_id "g71.t1"; gene_id "g71"; >--- 2025 ---- >! chr2L_3326983-3334169 AUGUSTUS CDS 4136 4365 0.96 + 2 transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 2027,2030 **** >! chr2L_3326983-3334169 AUGUSTUS CDS 4630 4961 0.96 + 1 transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS CDS 5021 5433 0.96 + 2 transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS CDS 5499 5616 0.81 + 0 transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS CDS 6073 6302 0.95 + 2 transcript_id "g71.t1"; gene_id "g71"; >--- 2027,2030 ---- >! chr2L_3326983-3334169 AUGUSTUS CDS 4630 4961 0.94 + 1 transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS CDS 5021 5433 0.94 + 2 transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS CDS 5499 5616 0.77 + 0 transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS CDS 6073 6302 0.97 + 2 transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 2032,2033 **** >! chr2L_3326983-3334169 AUGUSTUS CDS 6658 7004 1 + 1 transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS CDS 7060 7187 0.97 + 2 transcript_id "g71.t1"; gene_id "g71"; >--- 2032,2033 ---- >! chr2L_3326983-3334169 AUGUSTUS CDS 6658 7004 0.98 + 1 transcript_id "g71.t1"; gene_id "g71"; >! chr2L_3326983-3334169 AUGUSTUS CDS 7060 7187 0.99 + 2 transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 2055,2057 **** >! chr2L_3367779-3373536 AUGUSTUS gene 1 5269 0.73 - . g72 >! chr2L_3367779-3373536 AUGUSTUS transcript 1 5269 0.73 - . g72.t1 >! chr2L_3367779-3373536 AUGUSTUS intron 1 125 0.91 - . transcript_id "g72.t1"; gene_id "g72"; >--- 2055,2057 ---- >! chr2L_3367779-3373536 AUGUSTUS gene 1 5269 0.69 - . g72 >! chr2L_3367779-3373536 AUGUSTUS transcript 1 5269 0.69 - . g72.t1 >! chr2L_3367779-3373536 AUGUSTUS intron 1 125 0.92 - . transcript_id "g72.t1"; gene_id "g72"; >*************** >*** 2059,2060 **** >! chr2L_3367779-3373536 AUGUSTUS CDS 126 416 0.91 - 1 transcript_id "g72.t1"; gene_id "g72"; >! chr2L_3367779-3373536 AUGUSTUS CDS 5001 5269 0.82 - 0 transcript_id "g72.t1"; gene_id "g72"; >--- 2059,2060 ---- >! chr2L_3367779-3373536 AUGUSTUS CDS 126 416 0.92 - 1 transcript_id "g72.t1"; gene_id "g72"; >! chr2L_3367779-3373536 AUGUSTUS CDS 5001 5269 0.73 - 0 transcript_id "g72.t1"; gene_id "g72"; >*************** >*** 2084,2085 **** >! chr2L_3376860-3383491 AUGUSTUS gene 1 1632 0.96 + . g73 >! chr2L_3376860-3383491 AUGUSTUS transcript 1 1632 0.96 + . g73.t1 >--- 2084,2085 ---- >! chr2L_3376860-3383491 AUGUSTUS gene 1 1632 0.95 + . g73 >! chr2L_3376860-3383491 AUGUSTUS transcript 1 1632 0.95 + . g73.t1 >*************** >*** 2087 **** >! chr2L_3376860-3383491 AUGUSTUS intron 947 1002 0.99 + . transcript_id "g73.t1"; gene_id "g73"; >--- 2087 ---- >! chr2L_3376860-3383491 AUGUSTUS intron 947 1002 0.98 + . transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 2089 **** >! chr2L_3376860-3383491 AUGUSTUS CDS 323 946 0.96 + 2 transcript_id "g73.t1"; gene_id "g73"; >--- 2089 ---- >! chr2L_3376860-3383491 AUGUSTUS CDS 323 946 0.95 + 2 transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 2111,2113 **** >! chr2L_3521210-3527376 AUGUSTUS gene 1 1163 1 + . g74 >! chr2L_3521210-3527376 AUGUSTUS transcript 1 1163 1 + . g74.t1 >! chr2L_3521210-3527376 AUGUSTUS intron 100 158 1 + . transcript_id "g74.t1"; gene_id "g74"; >--- 2111,2113 ---- >! chr2L_3521210-3527376 AUGUSTUS gene 1 1163 0.97 + . g74 >! chr2L_3521210-3527376 AUGUSTUS transcript 1 1163 0.97 + . g74.t1 >! chr2L_3521210-3527376 AUGUSTUS intron 100 158 0.98 + . transcript_id "g74.t1"; gene_id "g74"; >*************** >*** 2115 **** >! chr2L_3521210-3527376 AUGUSTUS CDS 159 1163 1 + 0 transcript_id "g74.t1"; gene_id "g74"; >--- 2115 ---- >! chr2L_3521210-3527376 AUGUSTUS CDS 159 1163 0.97 + 0 transcript_id "g74.t1"; gene_id "g74"; >*************** >*** 2124,2125 **** >! chr2L_3521210-3527376 AUGUSTUS gene 1385 2407 0.9 - . g75 >! chr2L_3521210-3527376 AUGUSTUS transcript 1385 2407 0.9 - . g75.t1 >--- 2124,2125 ---- >! chr2L_3521210-3527376 AUGUSTUS gene 1385 2407 0.95 - . g75 >! chr2L_3521210-3527376 AUGUSTUS transcript 1385 2407 0.95 - . g75.t1 >*************** >*** 2128,2129 **** >! chr2L_3521210-3527376 AUGUSTUS CDS 1385 1868 0.91 - 1 transcript_id "g75.t1"; gene_id "g75"; >! chr2L_3521210-3527376 AUGUSTUS CDS 1935 2407 0.99 - 0 transcript_id "g75.t1"; gene_id "g75"; >--- 2128,2129 ---- >! chr2L_3521210-3527376 AUGUSTUS CDS 1385 1868 0.95 - 1 transcript_id "g75.t1"; gene_id "g75"; >! chr2L_3521210-3527376 AUGUSTUS CDS 1935 2407 1 - 0 transcript_id "g75.t1"; gene_id "g75"; >*************** >*** 2138,2139 **** >! chr2L_3521210-3527376 AUGUSTUS gene 4234 5991 0.86 + . g76 >! chr2L_3521210-3527376 AUGUSTUS transcript 4234 5991 0.86 + . g76.t1 >--- 2138,2139 ---- >! chr2L_3521210-3527376 AUGUSTUS gene 4234 5991 0.89 + . g76 >! chr2L_3521210-3527376 AUGUSTUS transcript 4234 5991 0.89 + . g76.t1 >*************** >*** 2141 **** >! chr2L_3521210-3527376 AUGUSTUS CDS 4234 5991 0.86 + 0 transcript_id "g76.t1"; gene_id "g76"; >--- 2141 ---- >! chr2L_3521210-3527376 AUGUSTUS CDS 4234 5991 0.89 + 0 transcript_id "g76.t1"; gene_id "g76"; >*************** >*** 2183,2184 **** >! chr2L_3616149-3622022 AUGUSTUS gene 5001 5874 0.77 - . g78 >! chr2L_3616149-3622022 AUGUSTUS transcript 5001 5874 0.77 - . g78.t1 >--- 2183,2184 ---- >! chr2L_3616149-3622022 AUGUSTUS gene 5001 5874 0.85 - . g78 >! chr2L_3616149-3622022 AUGUSTUS transcript 5001 5874 0.85 - . g78.t1 >*************** >*** 2186,2187 **** >! chr2L_3616149-3622022 AUGUSTUS intron 5177 5874 0.77 - . transcript_id "g78.t1"; gene_id "g78"; >! chr2L_3616149-3622022 AUGUSTUS CDS 5001 5176 0.86 - 2 transcript_id "g78.t1"; gene_id "g78"; >--- 2186,2187 ---- >! chr2L_3616149-3622022 AUGUSTUS intron 5177 5874 0.85 - . transcript_id "g78.t1"; gene_id "g78"; >! chr2L_3616149-3622022 AUGUSTUS CDS 5001 5176 0.96 - 2 transcript_id "g78.t1"; gene_id "g78"; >*************** >*** 2202,2204 **** >! chr2L_3686185-3691832 AUGUSTUS gene 1 5294 1 + . g79 >! chr2L_3686185-3691832 AUGUSTUS transcript 1 5294 1 + . g79.t1 >! chr2L_3686185-3691832 AUGUSTUS intron 1 4137 1 + . transcript_id "g79.t1"; gene_id "g79"; >--- 2202,2204 ---- >! chr2L_3686185-3691832 AUGUSTUS gene 1 5294 0.99 + . g79 >! chr2L_3686185-3691832 AUGUSTUS transcript 1 5294 0.99 + . g79.t1 >! chr2L_3686185-3691832 AUGUSTUS intron 1 4137 0.99 + . transcript_id "g79.t1"; gene_id "g79"; >*************** >*** 2227,2228 **** >! chr2L_3694111-3696971 AUGUSTUS gene 2180 2488 0.59 - . g80 >! chr2L_3694111-3696971 AUGUSTUS transcript 2180 2488 0.59 - . g80.t1 >--- 2227,2228 ---- >! chr2L_3694111-3696971 AUGUSTUS gene 2180 2488 0.73 - . g80 >! chr2L_3694111-3696971 AUGUSTUS transcript 2180 2488 0.73 - . g80.t1 >*************** >*** 2230,2232 **** >! chr2L_3694111-3696971 AUGUSTUS intron 2362 2421 0.93 - . transcript_id "g80.t1"; gene_id "g80"; >! chr2L_3694111-3696971 AUGUSTUS CDS 2180 2361 0.93 - 2 transcript_id "g80.t1"; gene_id "g80"; >! chr2L_3694111-3696971 AUGUSTUS CDS 2422 2488 0.59 - 0 transcript_id "g80.t1"; gene_id "g80"; >--- 2230,2232 ---- >! chr2L_3694111-3696971 AUGUSTUS intron 2362 2421 0.95 - . transcript_id "g80.t1"; gene_id "g80"; >! chr2L_3694111-3696971 AUGUSTUS CDS 2180 2361 0.95 - 2 transcript_id "g80.t1"; gene_id "g80"; >! chr2L_3694111-3696971 AUGUSTUS CDS 2422 2488 0.73 - 0 transcript_id "g80.t1"; gene_id "g80"; >*************** >*** 2275,2277 **** >! chr2L_3709655-3714831 AUGUSTUS gene 1 1964 0.55 - . g81 >! chr2L_3709655-3714831 AUGUSTUS transcript 1 1964 0.55 - . g81.t1 >! chr2L_3709655-3714831 AUGUSTUS intron 1 175 0.55 - . transcript_id "g81.t1"; gene_id "g81"; >--- 2275,2277 ---- >! chr2L_3709655-3714831 AUGUSTUS gene 1 1964 0.58 - . g81 >! chr2L_3709655-3714831 AUGUSTUS transcript 1 1964 0.58 - . g81.t1 >! chr2L_3709655-3714831 AUGUSTUS intron 1 175 0.58 - . transcript_id "g81.t1"; gene_id "g81"; >*************** >*** 2280 **** >! chr2L_3709655-3714831 AUGUSTUS CDS 176 391 0.56 - 2 transcript_id "g81.t1"; gene_id "g81"; >--- 2280 ---- >! chr2L_3709655-3714831 AUGUSTUS CDS 176 391 0.62 - 2 transcript_id "g81.t1"; gene_id "g81"; >*************** >*** 2296,2297 **** >! chr2L_3709655-3714831 AUGUSTUS intron 4838 4992 0.92 + . transcript_id "g82.t1"; gene_id "g82"; >! chr2L_3709655-3714831 AUGUSTUS CDS 4439 4837 0.55 + 0 transcript_id "g82.t1"; gene_id "g82"; >--- 2296,2297 ---- >! chr2L_3709655-3714831 AUGUSTUS intron 4838 4992 0.91 + . transcript_id "g82.t1"; gene_id "g82"; >! chr2L_3709655-3714831 AUGUSTUS CDS 4439 4837 0.56 + 0 transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 2315,2316 **** >! chr2L_3804074-3810192 AUGUSTUS gene 3092 4168 0.8 + . g83 >! chr2L_3804074-3810192 AUGUSTUS transcript 3092 4168 0.8 + . g83.t1 >--- 2315,2316 ---- >! chr2L_3804074-3810192 AUGUSTUS gene 3092 4168 0.67 + . g83 >! chr2L_3804074-3810192 AUGUSTUS transcript 3092 4168 0.67 + . g83.t1 >*************** >*** 2318 **** >! chr2L_3804074-3810192 AUGUSTUS CDS 3092 4168 0.8 + 0 transcript_id "g83.t1"; gene_id "g83"; >--- 2318 ---- >! chr2L_3804074-3810192 AUGUSTUS CDS 3092 4168 0.67 + 0 transcript_id "g83.t1"; gene_id "g83"; >*************** >*** 2343,2344 **** >! chr2L_3810193-3818330 AUGUSTUS gene 802 3138 0.97 - . g84 >! chr2L_3810193-3818330 AUGUSTUS transcript 802 3138 0.97 - . g84.t1 >--- 2343,2344 ---- >! chr2L_3810193-3818330 AUGUSTUS gene 802 3138 1 - . g84 >! chr2L_3810193-3818330 AUGUSTUS transcript 802 3138 1 - . g84.t1 >*************** >*** 2347 **** >! chr2L_3810193-3818330 AUGUSTUS intron 2343 2402 0.98 - . transcript_id "g84.t1"; gene_id "g84"; >--- 2347 ---- >! chr2L_3810193-3818330 AUGUSTUS intron 2343 2402 1 - . transcript_id "g84.t1"; gene_id "g84"; >*************** >*** 2350 **** >! chr2L_3810193-3818330 AUGUSTUS CDS 1379 2342 0.98 - 0 transcript_id "g84.t1"; gene_id "g84"; >--- 2350 ---- >! chr2L_3810193-3818330 AUGUSTUS CDS 1379 2342 1 - 0 transcript_id "g84.t1"; gene_id "g84"; >*************** >*** 2352 **** >! chr2L_3810193-3818330 AUGUSTUS CDS 3097 3138 0.99 - 0 transcript_id "g84.t1"; gene_id "g84"; >--- 2352 ---- >! chr2L_3810193-3818330 AUGUSTUS CDS 3097 3138 1 - 0 transcript_id "g84.t1"; gene_id "g84"; >*************** >*** 2377,2381 **** >! chr2L_3866553-3877335 AUGUSTUS gene 1 672 0.97 + . g85 >! chr2L_3866553-3877335 AUGUSTUS transcript 1 672 0.97 + . g85.t1 >! chr2L_3866553-3877335 AUGUSTUS intron 435 516 1 + . transcript_id "g85.t1"; gene_id "g85"; >! chr2L_3866553-3877335 AUGUSTUS CDS 1 434 1 + 2 transcript_id "g85.t1"; gene_id "g85"; >! chr2L_3866553-3877335 AUGUSTUS CDS 517 672 0.97 + 0 transcript_id "g85.t1"; gene_id "g85"; >--- 2377,2381 ---- >! chr2L_3866553-3877335 AUGUSTUS gene 1 672 0.98 + . g85 >! chr2L_3866553-3877335 AUGUSTUS transcript 1 672 0.98 + . g85.t1 >! chr2L_3866553-3877335 AUGUSTUS intron 435 516 0.99 + . transcript_id "g85.t1"; gene_id "g85"; >! chr2L_3866553-3877335 AUGUSTUS CDS 1 434 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; >! chr2L_3866553-3877335 AUGUSTUS CDS 517 672 0.99 + 0 transcript_id "g85.t1"; gene_id "g85"; >*************** >*** 2389,2390 **** >! chr2L_3866553-3877335 AUGUSTUS gene 1430 4637 0.69 + . g86 >! chr2L_3866553-3877335 AUGUSTUS transcript 1430 4637 0.69 + . g86.t1 >--- 2389,2390 ---- >! chr2L_3866553-3877335 AUGUSTUS gene 1430 4637 0.79 + . g86 >! chr2L_3866553-3877335 AUGUSTUS transcript 1430 4637 0.79 + . g86.t1 >*************** >*** 2392,2393 **** >! chr2L_3866553-3877335 AUGUSTUS intron 1437 1827 0.9 + . transcript_id "g86.t1"; gene_id "g86"; >! chr2L_3866553-3877335 AUGUSTUS intron 1989 2051 0.8 + . transcript_id "g86.t1"; gene_id "g86"; >--- 2392,2393 ---- >! chr2L_3866553-3877335 AUGUSTUS intron 1437 1827 0.95 + . transcript_id "g86.t1"; gene_id "g86"; >! chr2L_3866553-3877335 AUGUSTUS intron 1989 2051 0.88 + . transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 2396 **** >! chr2L_3866553-3877335 AUGUSTUS intron 3252 3320 0.99 + . transcript_id "g86.t1"; gene_id "g86"; >--- 2396 ---- >! chr2L_3866553-3877335 AUGUSTUS intron 3252 3320 0.98 + . transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 2399,2400 **** >! chr2L_3866553-3877335 AUGUSTUS CDS 1430 1436 0.9 + 0 transcript_id "g86.t1"; gene_id "g86"; >! chr2L_3866553-3877335 AUGUSTUS CDS 1828 1988 0.8 + 2 transcript_id "g86.t1"; gene_id "g86"; >--- 2399,2400 ---- >! chr2L_3866553-3877335 AUGUSTUS CDS 1430 1436 0.95 + 0 transcript_id "g86.t1"; gene_id "g86"; >! chr2L_3866553-3877335 AUGUSTUS CDS 1828 1988 0.88 + 2 transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 2403,2404 **** >! chr2L_3866553-3877335 AUGUSTUS CDS 2991 3251 0.99 + 2 transcript_id "g86.t1"; gene_id "g86"; >! chr2L_3866553-3877335 AUGUSTUS CDS 3321 3497 0.98 + 2 transcript_id "g86.t1"; gene_id "g86"; >--- 2403,2404 ---- >! chr2L_3866553-3877335 AUGUSTUS CDS 2991 3251 0.98 + 2 transcript_id "g86.t1"; gene_id "g86"; >! chr2L_3866553-3877335 AUGUSTUS CDS 3321 3497 0.97 + 2 transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 2420,2421 **** >! chr2L_3866553-3877335 AUGUSTUS gene 5001 5783 0.95 - . g87 >! chr2L_3866553-3877335 AUGUSTUS transcript 5001 5783 0.95 - . g87.t1 >--- 2420,2421 ---- >! chr2L_3866553-3877335 AUGUSTUS gene 5001 5783 0.97 - . g87 >! chr2L_3866553-3877335 AUGUSTUS transcript 5001 5783 0.97 - . g87.t1 >*************** >*** 2425 **** >! chr2L_3866553-3877335 AUGUSTUS CDS 5621 5783 0.95 - 0 transcript_id "g87.t1"; gene_id "g87"; >--- 2425 ---- >! chr2L_3866553-3877335 AUGUSTUS CDS 5621 5783 0.97 - 0 transcript_id "g87.t1"; gene_id "g87"; >*************** >*** 2432,2433 **** >! chr2L_3866553-3877335 AUGUSTUS gene 6278 8741 0.97 - . g88 >! chr2L_3866553-3877335 AUGUSTUS transcript 6278 8741 0.97 - . g88.t1 >--- 2432,2433 ---- >! chr2L_3866553-3877335 AUGUSTUS gene 6278 8741 0.94 - . g88 >! chr2L_3866553-3877335 AUGUSTUS transcript 6278 8741 0.94 - . g88.t1 >*************** >*** 2437 **** >! chr2L_3866553-3877335 AUGUSTUS intron 7844 7897 1 - . transcript_id "g88.t1"; gene_id "g88"; >--- 2437 ---- >! chr2L_3866553-3877335 AUGUSTUS intron 7844 7897 0.98 - . transcript_id "g88.t1"; gene_id "g88"; >*************** >*** 2440,2441 **** >! chr2L_3866553-3877335 AUGUSTUS CDS 6833 7843 1 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chr2L_3866553-3877335 AUGUSTUS CDS 7898 8741 0.97 - 0 transcript_id "g88.t1"; gene_id "g88"; >--- 2440,2441 ---- >! chr2L_3866553-3877335 AUGUSTUS CDS 6833 7843 0.98 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chr2L_3866553-3877335 AUGUSTUS CDS 7898 8741 0.96 - 0 transcript_id "g88.t1"; gene_id "g88"; >*************** >*** 2484,2485 **** >! chr2L_4005742-4007069 AUGUSTUS gene 372 695 1 + . g90 >! chr2L_4005742-4007069 AUGUSTUS transcript 372 695 1 + . g90.t1 >--- 2484,2485 ---- >! chr2L_4005742-4007069 AUGUSTUS gene 372 695 0.99 + . g90 >! chr2L_4005742-4007069 AUGUSTUS transcript 372 695 0.99 + . g90.t1 >*************** >*** 2487 **** >! chr2L_4005742-4007069 AUGUSTUS CDS 372 695 1 + 0 transcript_id "g90.t1"; gene_id "g90"; >--- 2487 ---- >! chr2L_4005742-4007069 AUGUSTUS CDS 372 695 0.99 + 0 transcript_id "g90.t1"; gene_id "g90"; >*************** >*** 2504,2507 **** >! chr2L_4008322-4013999 AUGUSTUS gene 1 678 0.69 + . g91 >! chr2L_4008322-4013999 AUGUSTUS transcript 1 678 0.69 + . g91.t1 >! chr2L_4008322-4013999 AUGUSTUS intron 1 426 0.69 + . transcript_id "g91.t1"; gene_id "g91"; >! chr2L_4008322-4013999 AUGUSTUS CDS 427 678 0.69 + 0 transcript_id "g91.t1"; gene_id "g91"; >--- 2504,2507 ---- >! chr2L_4008322-4013999 AUGUSTUS gene 1 678 0.78 + . g91 >! chr2L_4008322-4013999 AUGUSTUS transcript 1 678 0.78 + . g91.t1 >! chr2L_4008322-4013999 AUGUSTUS intron 1 426 0.78 + . transcript_id "g91.t1"; gene_id "g91"; >! chr2L_4008322-4013999 AUGUSTUS CDS 427 678 0.78 + 0 transcript_id "g91.t1"; gene_id "g91"; >*************** >*** 2538,2539 **** >! chr2L_4027676-4113832 AUGUSTUS gene 44563 52355 0.23 + . g92 >! chr2L_4027676-4113832 AUGUSTUS transcript 44563 52355 0.23 + . g92.t1 >--- 2538,2539 ---- >! chr2L_4027676-4113832 AUGUSTUS gene 44563 52355 0.19 + . g92 >! chr2L_4027676-4113832 AUGUSTUS transcript 44563 52355 0.19 + . g92.t1 >*************** >*** 2541,2542 **** >! chr2L_4027676-4113832 AUGUSTUS intron 44579 46838 0.28 + . transcript_id "g92.t1"; gene_id "g92"; >! chr2L_4027676-4113832 AUGUSTUS intron 47038 51828 1 + . transcript_id "g92.t1"; gene_id "g92"; >--- 2541,2542 ---- >! chr2L_4027676-4113832 AUGUSTUS intron 44579 46838 0.21 + . transcript_id "g92.t1"; gene_id "g92"; >! chr2L_4027676-4113832 AUGUSTUS intron 47038 51828 0.99 + . transcript_id "g92.t1"; gene_id "g92"; >*************** >*** 2544 **** >! chr2L_4027676-4113832 AUGUSTUS CDS 44563 44578 0.24 + 0 transcript_id "g92.t1"; gene_id "g92"; >--- 2544 ---- >! chr2L_4027676-4113832 AUGUSTUS CDS 44563 44578 0.19 + 0 transcript_id "g92.t1"; gene_id "g92"; >*************** >*** 2555,2556 **** >! chr2L_4027676-4113832 AUGUSTUS gene 68579 86127 0.43 + . g93 >! chr2L_4027676-4113832 AUGUSTUS transcript 68579 86127 0.43 + . g93.t1 >--- 2555,2556 ---- >! chr2L_4027676-4113832 AUGUSTUS gene 68579 86127 0.35 + . g93 >! chr2L_4027676-4113832 AUGUSTUS transcript 68579 86127 0.35 + . g93.t1 >*************** >*** 2558,2559 **** >! chr2L_4027676-4113832 AUGUSTUS intron 68598 70174 0.53 + . transcript_id "g93.t1"; gene_id "g93"; >! chr2L_4027676-4113832 AUGUSTUS intron 72365 72946 0.85 + . transcript_id "g93.t1"; gene_id "g93"; >--- 2558,2559 ---- >! chr2L_4027676-4113832 AUGUSTUS intron 68598 70174 0.41 + . transcript_id "g93.t1"; gene_id "g93"; >! chr2L_4027676-4113832 AUGUSTUS intron 72365 72946 0.88 + . transcript_id "g93.t1"; gene_id "g93"; >*************** >*** 2562,2564 **** >! chr2L_4027676-4113832 AUGUSTUS CDS 68579 68597 0.53 + 0 transcript_id "g93.t1"; gene_id "g93"; >! chr2L_4027676-4113832 AUGUSTUS CDS 70175 72364 0.87 + 2 transcript_id "g93.t1"; gene_id "g93"; >! chr2L_4027676-4113832 AUGUSTUS CDS 72947 73453 0.98 + 2 transcript_id "g93.t1"; gene_id "g93"; >--- 2562,2564 ---- >! chr2L_4027676-4113832 AUGUSTUS CDS 68579 68597 0.41 + 0 transcript_id "g93.t1"; gene_id "g93"; >! chr2L_4027676-4113832 AUGUSTUS CDS 70175 72364 0.93 + 2 transcript_id "g93.t1"; gene_id "g93"; >! chr2L_4027676-4113832 AUGUSTUS CDS 72947 73453 0.95 + 2 transcript_id "g93.t1"; gene_id "g93"; >*************** >*** 2599,2600 **** >! chr2L_4118008-4128899 AUGUSTUS gene 412 5892 0.08 + . g94 >! chr2L_4118008-4128899 AUGUSTUS transcript 412 5892 0.08 + . g94.t1 >--- 2599,2600 ---- >! chr2L_4118008-4128899 AUGUSTUS gene 412 5892 0.15 + . g94 >! chr2L_4118008-4128899 AUGUSTUS transcript 412 5892 0.15 + . g94.t1 >*************** >*** 2602 **** >! chr2L_4118008-4128899 AUGUSTUS intron 423 2432 0.31 + . transcript_id "g94.t1"; gene_id "g94"; >--- 2602 ---- >! chr2L_4118008-4128899 AUGUSTUS intron 423 2432 0.3 + . transcript_id "g94.t1"; gene_id "g94"; >*************** >*** 2604,2605 **** >! chr2L_4118008-4128899 AUGUSTUS intron 3189 3248 0.98 + . transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS intron 3383 4038 0.59 + . transcript_id "g94.t1"; gene_id "g94"; >--- 2604,2605 ---- >! chr2L_4118008-4128899 AUGUSTUS intron 3189 3248 0.99 + . transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS intron 3383 4038 0.56 + . transcript_id "g94.t1"; gene_id "g94"; >*************** >*** 2607,2611 **** >! chr2L_4118008-4128899 AUGUSTUS intron 5472 5530 0.98 + . transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 412 422 0.31 + 0 transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 2433 2590 0.49 + 1 transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 2648 3188 0.97 + 2 transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 3249 3382 0.59 + 1 transcript_id "g94.t1"; gene_id "g94"; >--- 2607,2611 ---- >! chr2L_4118008-4128899 AUGUSTUS intron 5472 5530 0.96 + . transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 412 422 0.29 + 0 transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 2433 2590 0.5 + 1 transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 2648 3188 0.99 + 2 transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 3249 3382 0.56 + 1 transcript_id "g94.t1"; gene_id "g94"; >*************** >*** 2613,2614 **** >! chr2L_4118008-4128899 AUGUSTUS CDS 4708 5471 0.76 + 1 transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 5531 5892 0.98 + 2 transcript_id "g94.t1"; gene_id "g94"; >--- 2613,2614 ---- >! chr2L_4118008-4128899 AUGUSTUS CDS 4708 5471 0.81 + 1 transcript_id "g94.t1"; gene_id "g94"; >! chr2L_4118008-4128899 AUGUSTUS CDS 5531 5892 0.97 + 2 transcript_id "g94.t1"; gene_id "g94"; >*************** >*** 2638,2639 **** >! chr2L_4181416-4187815 AUGUSTUS gene 5001 6068 0.97 - . g95 >! chr2L_4181416-4187815 AUGUSTUS transcript 5001 6068 0.97 - . g95.t1 >--- 2638,2639 ---- >! chr2L_4181416-4187815 AUGUSTUS gene 5001 6068 0.98 - . g95 >! chr2L_4181416-4187815 AUGUSTUS transcript 5001 6068 0.98 - . g95.t1 >*************** >*** 2641 **** >! chr2L_4181416-4187815 AUGUSTUS CDS 5001 6068 0.97 - 0 transcript_id "g95.t1"; gene_id "g95"; >--- 2641 ---- >! chr2L_4181416-4187815 AUGUSTUS CDS 5001 6068 0.98 - 0 transcript_id "g95.t1"; gene_id "g95"; >*************** >*** 2668,2669 **** >! chr2L_4388710-4393512 AUGUSTUS gene 16 3977 0.82 + . g96 >! chr2L_4388710-4393512 AUGUSTUS transcript 16 3977 0.82 + . g96.t1 >--- 2668,2669 ---- >! chr2L_4388710-4393512 AUGUSTUS gene 16 3977 0.78 + . g96 >! chr2L_4388710-4393512 AUGUSTUS transcript 16 3977 0.78 + . g96.t1 >*************** >*** 2675,2676 **** >! chr2L_4388710-4393512 AUGUSTUS CDS 16 149 0.84 + 0 transcript_id "g96.t1"; gene_id "g96"; >! chr2L_4388710-4393512 AUGUSTUS CDS 1456 1996 1 + 1 transcript_id "g96.t1"; gene_id "g96"; >--- 2675,2676 ---- >! chr2L_4388710-4393512 AUGUSTUS CDS 16 149 0.8 + 0 transcript_id "g96.t1"; gene_id "g96"; >! chr2L_4388710-4393512 AUGUSTUS CDS 1456 1996 0.99 + 1 transcript_id "g96.t1"; gene_id "g96"; >*************** >*** 2719,2720 **** >! chr2L_4453122-4454545 AUGUSTUS gene 170 1241 0.64 - . g98 >! chr2L_4453122-4454545 AUGUSTUS transcript 170 1241 0.64 - . g98.t1 >--- 2719,2720 ---- >! chr2L_4453122-4454545 AUGUSTUS gene 170 1241 0.62 - . g98 >! chr2L_4453122-4454545 AUGUSTUS transcript 170 1241 0.62 - . g98.t1 >*************** >*** 2722,2724 **** >! chr2L_4453122-4454545 AUGUSTUS intron 1145 1205 0.65 - . transcript_id "g98.t1"; gene_id "g98"; >! chr2L_4453122-4454545 AUGUSTUS CDS 170 1144 0.74 - 0 transcript_id "g98.t1"; gene_id "g98"; >! chr2L_4453122-4454545 AUGUSTUS CDS 1206 1241 0.64 - 0 transcript_id "g98.t1"; gene_id "g98"; >--- 2722,2724 ---- >! chr2L_4453122-4454545 AUGUSTUS intron 1145 1205 0.64 - . transcript_id "g98.t1"; gene_id "g98"; >! chr2L_4453122-4454545 AUGUSTUS CDS 170 1144 0.71 - 0 transcript_id "g98.t1"; gene_id "g98"; >! chr2L_4453122-4454545 AUGUSTUS CDS 1206 1241 0.62 - 0 transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 2761,2762 **** >! chr2L_4454546-4457071 AUGUSTUS gene 781 1444 0.95 - . g100 >! chr2L_4454546-4457071 AUGUSTUS transcript 781 1444 0.95 - . g100.t1 >--- 2761,2762 ---- >! chr2L_4454546-4457071 AUGUSTUS gene 781 1444 0.96 - . g100 >! chr2L_4454546-4457071 AUGUSTUS transcript 781 1444 0.96 - . g100.t1 >*************** >*** 2766 **** >! chr2L_4454546-4457071 AUGUSTUS CDS 1312 1444 0.95 - 0 transcript_id "g100.t1"; gene_id "g100"; >--- 2766 ---- >! chr2L_4454546-4457071 AUGUSTUS CDS 1312 1444 0.96 - 0 transcript_id "g100.t1"; gene_id "g100"; >*************** >*** 2774,2775 **** >! chr2L_4454546-4457071 AUGUSTUS gene 1492 2526 0.45 - . g101 >! chr2L_4454546-4457071 AUGUSTUS transcript 1492 2526 0.45 - . g101.t1 >--- 2774,2775 ---- >! chr2L_4454546-4457071 AUGUSTUS gene 1492 2526 0.47 - . g101 >! chr2L_4454546-4457071 AUGUSTUS transcript 1492 2526 0.47 - . g101.t1 >*************** >*** 2778,2780 **** >! chr2L_4454546-4457071 AUGUSTUS intron 1926 2526 0.49 - . transcript_id "g101.t1"; gene_id "g101"; >! chr2L_4454546-4457071 AUGUSTUS CDS 1492 1787 0.95 - 2 transcript_id "g101.t1"; gene_id "g101"; >! chr2L_4454546-4457071 AUGUSTUS CDS 1841 1925 0.49 - 0 transcript_id "g101.t1"; gene_id "g101"; >--- 2778,2780 ---- >! chr2L_4454546-4457071 AUGUSTUS intron 1926 2526 0.5 - . transcript_id "g101.t1"; gene_id "g101"; >! chr2L_4454546-4457071 AUGUSTUS CDS 1492 1787 0.96 - 2 transcript_id "g101.t1"; gene_id "g101"; >! chr2L_4454546-4457071 AUGUSTUS CDS 1841 1925 0.5 - 0 transcript_id "g101.t1"; gene_id "g101"; >*************** >*** 2800,2801 **** >! chr2L_4457072-4459762 AUGUSTUS gene 310 1220 0.67 - . g102 >! chr2L_4457072-4459762 AUGUSTUS transcript 310 1220 0.67 - . g102.t1 >--- 2800,2801 ---- >! chr2L_4457072-4459762 AUGUSTUS gene 310 1220 0.74 - . g102 >! chr2L_4457072-4459762 AUGUSTUS transcript 310 1220 0.74 - . g102.t1 >*************** >*** 2804 **** >! chr2L_4457072-4459762 AUGUSTUS intron 987 1217 0.67 - . transcript_id "g102.t1"; gene_id "g102"; >--- 2804 ---- >! chr2L_4457072-4459762 AUGUSTUS intron 987 1217 0.74 - . transcript_id "g102.t1"; gene_id "g102"; >*************** >*** 2807 **** >! chr2L_4457072-4459762 AUGUSTUS CDS 1218 1220 0.67 - 0 transcript_id "g102.t1"; gene_id "g102"; >--- 2807 ---- >! chr2L_4457072-4459762 AUGUSTUS CDS 1218 1220 0.74 - 0 transcript_id "g102.t1"; gene_id "g102"; >*************** >*** 2814,2815 **** >! chr2L_4457072-4459762 AUGUSTUS gene 1933 2476 0.67 - . g103 >! chr2L_4457072-4459762 AUGUSTUS transcript 1933 2476 0.67 - . g103.t1 >--- 2814,2815 ---- >! chr2L_4457072-4459762 AUGUSTUS gene 1933 2476 0.77 - . g103 >! chr2L_4457072-4459762 AUGUSTUS transcript 1933 2476 0.77 - . g103.t1 >*************** >*** 2818,2819 **** >! chr2L_4457072-4459762 AUGUSTUS intron 2359 2412 0.99 - . transcript_id "g103.t1"; gene_id "g103"; >! chr2L_4457072-4459762 AUGUSTUS CDS 1933 2136 0.7 - 0 transcript_id "g103.t1"; gene_id "g103"; >--- 2818,2819 ---- >! chr2L_4457072-4459762 AUGUSTUS intron 2359 2412 1 - . transcript_id "g103.t1"; gene_id "g103"; >! chr2L_4457072-4459762 AUGUSTUS CDS 1933 2136 0.79 - 0 transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 2821 **** >! chr2L_4457072-4459762 AUGUSTUS CDS 2413 2476 0.96 - 0 transcript_id "g103.t1"; gene_id "g103"; >--- 2821 ---- >! chr2L_4457072-4459762 AUGUSTUS CDS 2413 2476 0.98 - 0 transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 2846,2847 **** >! chr2L_4874021-4887392 AUGUSTUS CDS 60 149 0.97 + 0 transcript_id "g104.t1"; gene_id "g104"; >! chr2L_4874021-4887392 AUGUSTUS CDS 867 1064 1 + 0 transcript_id "g104.t1"; gene_id "g104"; >--- 2846,2847 ---- >! chr2L_4874021-4887392 AUGUSTUS CDS 60 149 1 + 0 transcript_id "g104.t1"; gene_id "g104"; >! chr2L_4874021-4887392 AUGUSTUS CDS 867 1064 0.99 + 0 transcript_id "g104.t1"; gene_id "g104"; >*************** >*** 2854,2855 **** >! chr2L_4874021-4887392 AUGUSTUS gene 5001 8372 0.3 - . g105 >! chr2L_4874021-4887392 AUGUSTUS transcript 5001 8372 0.3 - . g105.t1 >--- 2854,2855 ---- >! chr2L_4874021-4887392 AUGUSTUS gene 5001 8372 0.36 - . g105 >! chr2L_4874021-4887392 AUGUSTUS transcript 5001 8372 0.36 - . g105.t1 >*************** >*** 2857,2861 **** >! chr2L_4874021-4887392 AUGUSTUS intron 5177 6357 0.3 - . transcript_id "g105.t1"; gene_id "g105"; >! chr2L_4874021-4887392 AUGUSTUS intron 6453 7194 0.3 - . transcript_id "g105.t1"; gene_id "g105"; >! chr2L_4874021-4887392 AUGUSTUS CDS 5001 5176 0.97 - 2 transcript_id "g105.t1"; gene_id "g105"; >! chr2L_4874021-4887392 AUGUSTUS CDS 6358 6452 0.3 - 1 transcript_id "g105.t1"; gene_id "g105"; >! chr2L_4874021-4887392 AUGUSTUS CDS 7195 8372 0.3 - 0 transcript_id "g105.t1"; gene_id "g105"; >--- 2857,2861 ---- >! chr2L_4874021-4887392 AUGUSTUS intron 5177 6357 0.36 - . transcript_id "g105.t1"; gene_id "g105"; >! chr2L_4874021-4887392 AUGUSTUS intron 6453 7194 0.36 - . transcript_id "g105.t1"; gene_id "g105"; >! chr2L_4874021-4887392 AUGUSTUS CDS 5001 5176 0.99 - 2 transcript_id "g105.t1"; gene_id "g105"; >! chr2L_4874021-4887392 AUGUSTUS CDS 6358 6452 0.36 - 1 transcript_id "g105.t1"; gene_id "g105"; >! chr2L_4874021-4887392 AUGUSTUS CDS 7195 8372 0.36 - 0 transcript_id "g105.t1"; gene_id "g105"; >*************** >*** 2872,2873 **** >! chr2L_4874021-4887392 AUGUSTUS gene 9627 11489 0.99 + . g106 >! chr2L_4874021-4887392 AUGUSTUS transcript 9627 11489 0.99 + . g106.t1 >--- 2872,2873 ---- >! chr2L_4874021-4887392 AUGUSTUS gene 9627 11489 0.97 + . g106 >! chr2L_4874021-4887392 AUGUSTUS transcript 9627 11489 0.97 + . g106.t1 >*************** >*** 2876 **** >! chr2L_4874021-4887392 AUGUSTUS CDS 9627 10319 0.99 + 0 transcript_id "g106.t1"; gene_id "g106"; >--- 2876 ---- >! chr2L_4874021-4887392 AUGUSTUS CDS 9627 10319 0.97 + 0 transcript_id "g106.t1"; gene_id "g106"; >*************** >*** 2951,2952 **** >! chr2L_5038935-5040471 AUGUSTUS CDS 177 806 0.89 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chr2L_5038935-5040471 AUGUSTUS CDS 875 1126 0.82 + 0 transcript_id "g109.t1"; gene_id "g109"; >--- 2951,2952 ---- >! chr2L_5038935-5040471 AUGUSTUS CDS 177 806 0.88 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chr2L_5038935-5040471 AUGUSTUS CDS 875 1126 0.85 + 0 transcript_id "g109.t1"; gene_id "g109"; >*************** >*** 2975,2976 **** >! chr2L_5047040-5049545 AUGUSTUS gene 65 739 0.95 + . g110 >! chr2L_5047040-5049545 AUGUSTUS transcript 65 739 0.95 + . g110.t1 >--- 2975,2976 ---- >! chr2L_5047040-5049545 AUGUSTUS gene 65 739 0.97 + . g110 >! chr2L_5047040-5049545 AUGUSTUS transcript 65 739 0.97 + . g110.t1 >*************** >*** 2979 **** >! chr2L_5047040-5049545 AUGUSTUS intron 441 503 0.95 + . transcript_id "g110.t1"; gene_id "g110"; >--- 2979 ---- >! chr2L_5047040-5049545 AUGUSTUS intron 441 503 0.97 + . transcript_id "g110.t1"; gene_id "g110"; >*************** >*** 2981 **** >! chr2L_5047040-5049545 AUGUSTUS CDS 234 440 0.95 + 2 transcript_id "g110.t1"; gene_id "g110"; >--- 2981 ---- >! chr2L_5047040-5049545 AUGUSTUS CDS 234 440 0.97 + 2 transcript_id "g110.t1"; gene_id "g110"; >*************** >*** 2990,2991 **** >! chr2L_5047040-5049545 AUGUSTUS gene 1325 2506 0.93 - . g111 >! chr2L_5047040-5049545 AUGUSTUS transcript 1325 2506 0.93 - . g111.t1 >--- 2990,2991 ---- >! chr2L_5047040-5049545 AUGUSTUS gene 1325 2506 0.94 - . g111 >! chr2L_5047040-5049545 AUGUSTUS transcript 1325 2506 0.94 - . g111.t1 >*************** >*** 2993,2995 **** >! chr2L_5047040-5049545 AUGUSTUS intron 1681 1751 0.98 - . transcript_id "g111.t1"; gene_id "g111"; >! chr2L_5047040-5049545 AUGUSTUS CDS 1325 1680 0.96 - 2 transcript_id "g111.t1"; gene_id "g111"; >! chr2L_5047040-5049545 AUGUSTUS CDS 1752 2506 0.95 - 1 transcript_id "g111.t1"; gene_id "g111"; >--- 2993,2995 ---- >! chr2L_5047040-5049545 AUGUSTUS intron 1681 1751 0.95 - . transcript_id "g111.t1"; gene_id "g111"; >! chr2L_5047040-5049545 AUGUSTUS CDS 1325 1680 0.95 - 2 transcript_id "g111.t1"; gene_id "g111"; >! chr2L_5047040-5049545 AUGUSTUS CDS 1752 2506 0.94 - 1 transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 3017,3018 **** >! chr2L_5052910-5054524 AUGUSTUS gene 175 1469 0.69 + . g112 >! chr2L_5052910-5054524 AUGUSTUS transcript 175 1469 0.69 + . g112.t1 >--- 3017,3018 ---- >! chr2L_5052910-5054524 AUGUSTUS gene 175 1469 0.79 + . g112 >! chr2L_5052910-5054524 AUGUSTUS transcript 175 1469 0.79 + . g112.t1 >*************** >*** 3020 **** >! chr2L_5052910-5054524 AUGUSTUS intron 260 329 0.69 + . transcript_id "g112.t1"; gene_id "g112"; >--- 3020 ---- >! chr2L_5052910-5054524 AUGUSTUS intron 260 329 0.8 + . transcript_id "g112.t1"; gene_id "g112"; >*************** >*** 3022 **** >! chr2L_5052910-5054524 AUGUSTUS CDS 175 259 0.69 + 0 transcript_id "g112.t1"; gene_id "g112"; >--- 3022 ---- >! chr2L_5052910-5054524 AUGUSTUS CDS 175 259 0.79 + 0 transcript_id "g112.t1"; gene_id "g112"; >*************** >*** 3044,3045 **** >! chr2L_5101470-5108637 AUGUSTUS gene 1329 2190 0.35 + . g113 >! chr2L_5101470-5108637 AUGUSTUS transcript 1329 2190 0.35 + . g113.t1 >--- 3044,3045 ---- >! chr2L_5101470-5108637 AUGUSTUS gene 1329 2190 0.24 + . g113 >! chr2L_5101470-5108637 AUGUSTUS transcript 1329 2190 0.24 + . g113.t1 >*************** >*** 3047,3049 **** >! chr2L_5101470-5108637 AUGUSTUS intron 2128 2185 0.35 + . transcript_id "g113.t1"; gene_id "g113"; >! chr2L_5101470-5108637 AUGUSTUS CDS 1329 2127 0.82 + 0 transcript_id "g113.t1"; gene_id "g113"; >! chr2L_5101470-5108637 AUGUSTUS CDS 2186 2190 0.35 + 2 transcript_id "g113.t1"; gene_id "g113"; >--- 3047,3049 ---- >! chr2L_5101470-5108637 AUGUSTUS intron 2128 2185 0.24 + . transcript_id "g113.t1"; gene_id "g113"; >! chr2L_5101470-5108637 AUGUSTUS CDS 1329 2127 0.91 + 0 transcript_id "g113.t1"; gene_id "g113"; >! chr2L_5101470-5108637 AUGUSTUS CDS 2186 2190 0.24 + 2 transcript_id "g113.t1"; gene_id "g113"; >*************** >*** 3077,3078 **** >! chr2L_5205439-5215257 AUGUSTUS gene 1870 3781 0.64 + . g114 >! chr2L_5205439-5215257 AUGUSTUS transcript 1870 3781 0.64 + . g114.t1 >--- 3077,3078 ---- >! chr2L_5205439-5215257 AUGUSTUS gene 1870 3781 0.72 + . g114 >! chr2L_5205439-5215257 AUGUSTUS transcript 1870 3781 0.72 + . g114.t1 >*************** >*** 3080,3089 **** >! chr2L_5205439-5215257 AUGUSTUS intron 2064 2219 0.88 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS intron 2359 2419 1 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS intron 2528 2584 0.82 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS intron 3213 3282 0.95 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS intron 3556 3617 0.91 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 1870 2063 0.87 + 0 transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 2220 2358 0.96 + 1 transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 2420 2527 0.82 + 0 transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 2585 3212 0.81 + 0 transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 3283 3555 0.92 + 2 transcript_id "g114.t1"; gene_id "g114"; >--- 3080,3089 ---- >! chr2L_5205439-5215257 AUGUSTUS intron 2064 2219 0.95 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS intron 2359 2419 0.99 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS intron 2528 2584 0.91 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS intron 3213 3282 0.93 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS intron 3556 3617 0.93 + . transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 1870 2063 0.92 + 0 transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 2220 2358 0.98 + 1 transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 2420 2527 0.91 + 0 transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 2585 3212 0.91 + 0 transcript_id "g114.t1"; gene_id "g114"; >! chr2L_5205439-5215257 AUGUSTUS CDS 3283 3555 0.93 + 2 transcript_id "g114.t1"; gene_id "g114"; >*************** >*** 3101,3102 **** >! chr2L_5205439-5215257 AUGUSTUS gene 5064 6941 0.56 + . g115 >! chr2L_5205439-5215257 AUGUSTUS transcript 5064 6941 0.56 + . g115.t1 >--- 3101,3102 ---- >! chr2L_5205439-5215257 AUGUSTUS gene 5064 6941 0.54 + . g115 >! chr2L_5205439-5215257 AUGUSTUS transcript 5064 6941 0.54 + . g115.t1 >*************** >*** 3107,3108 **** >! chr2L_5205439-5215257 AUGUSTUS intron 6713 6774 0.68 + . transcript_id "g115.t1"; gene_id "g115"; >! chr2L_5205439-5215257 AUGUSTUS CDS 5064 5257 0.84 + 0 transcript_id "g115.t1"; gene_id "g115"; >--- 3107,3108 ---- >! chr2L_5205439-5215257 AUGUSTUS intron 6713 6774 0.65 + . transcript_id "g115.t1"; gene_id "g115"; >! chr2L_5205439-5215257 AUGUSTUS CDS 5064 5257 0.83 + 0 transcript_id "g115.t1"; gene_id "g115"; >*************** >*** 3111,3112 **** >! chr2L_5205439-5215257 AUGUSTUS CDS 6443 6712 0.68 + 2 transcript_id "g115.t1"; gene_id "g115"; >! chr2L_5205439-5215257 AUGUSTUS CDS 6775 6941 0.68 + 2 transcript_id "g115.t1"; gene_id "g115"; >--- 3111,3112 ---- >! chr2L_5205439-5215257 AUGUSTUS CDS 6443 6712 0.65 + 2 transcript_id "g115.t1"; gene_id "g115"; >! chr2L_5205439-5215257 AUGUSTUS CDS 6775 6941 0.65 + 2 transcript_id "g115.t1"; gene_id "g115"; >*************** >*** 3122,3123 **** >! chr2L_5205439-5215257 AUGUSTUS gene 7051 9115 0.31 - . g116 >! chr2L_5205439-5215257 AUGUSTUS transcript 7051 9115 0.31 - . g116.t1 >--- 3122,3123 ---- >! chr2L_5205439-5215257 AUGUSTUS gene 7051 9115 0.29 - . g116 >! chr2L_5205439-5215257 AUGUSTUS transcript 7051 9115 0.29 - . g116.t1 >*************** >*** 3125,3127 **** >! chr2L_5205439-5215257 AUGUSTUS intron 7225 7594 0.71 - . transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS intron 7895 7949 1 - . transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS intron 8203 8251 1 - . transcript_id "g116.t1"; gene_id "g116"; >--- 3125,3127 ---- >! chr2L_5205439-5215257 AUGUSTUS intron 7225 7594 0.69 - . transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS intron 7895 7949 0.99 - . transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS intron 8203 8251 0.99 - . transcript_id "g116.t1"; gene_id "g116"; >*************** >*** 3130,3133 **** >! chr2L_5205439-5215257 AUGUSTUS CDS 7051 7224 0.9 - 0 transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS CDS 7595 7894 0.71 - 0 transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS CDS 7950 8202 1 - 1 transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS CDS 8252 8345 1 - 2 transcript_id "g116.t1"; gene_id "g116"; >--- 3130,3133 ---- >! chr2L_5205439-5215257 AUGUSTUS CDS 7051 7224 0.92 - 0 transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS CDS 7595 7894 0.68 - 0 transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS CDS 7950 8202 0.99 - 1 transcript_id "g116.t1"; gene_id "g116"; >! chr2L_5205439-5215257 AUGUSTUS CDS 8252 8345 0.99 - 2 transcript_id "g116.t1"; gene_id "g116"; >*************** >*** 3135 **** >! chr2L_5205439-5215257 AUGUSTUS CDS 8879 9115 0.49 - 0 transcript_id "g116.t1"; gene_id "g116"; >--- 3135 ---- >! chr2L_5205439-5215257 AUGUSTUS CDS 8879 9115 0.47 - 0 transcript_id "g116.t1"; gene_id "g116"; >*************** >*** 3167,3171 **** >! chr2L_5267678-5278774 AUGUSTUS gene 1 2624 0.78 + . g117 >! chr2L_5267678-5278774 AUGUSTUS transcript 1 2624 0.78 + . g117.t1 >! chr2L_5267678-5278774 AUGUSTUS intron 428 1683 0.78 + . transcript_id "g117.t1"; gene_id "g117"; >! chr2L_5267678-5278774 AUGUSTUS CDS 1 427 0.79 + 0 transcript_id "g117.t1"; gene_id "g117"; >! chr2L_5267678-5278774 AUGUSTUS CDS 1684 2624 0.98 + 2 transcript_id "g117.t1"; gene_id "g117"; >--- 3167,3171 ---- >! chr2L_5267678-5278774 AUGUSTUS gene 1 2624 0.82 + . g117 >! chr2L_5267678-5278774 AUGUSTUS transcript 1 2624 0.82 + . g117.t1 >! chr2L_5267678-5278774 AUGUSTUS intron 428 1683 0.82 + . transcript_id "g117.t1"; gene_id "g117"; >! chr2L_5267678-5278774 AUGUSTUS CDS 1 427 0.82 + 0 transcript_id "g117.t1"; gene_id "g117"; >! chr2L_5267678-5278774 AUGUSTUS CDS 1684 2624 1 + 2 transcript_id "g117.t1"; gene_id "g117"; >*************** >*** 3181,3182 **** >! chr2L_5267678-5278774 AUGUSTUS gene 5001 10512 0.67 - . g118 >! chr2L_5267678-5278774 AUGUSTUS transcript 5001 10512 0.67 - . g118.t1 >--- 3181,3182 ---- >! chr2L_5267678-5278774 AUGUSTUS gene 5001 10512 0.66 - . g118 >! chr2L_5267678-5278774 AUGUSTUS transcript 5001 10512 0.66 - . g118.t1 >*************** >*** 3186,3189 **** >! chr2L_5267678-5278774 AUGUSTUS intron 5914 6341 0.78 - . transcript_id "g118.t1"; gene_id "g118"; >! chr2L_5267678-5278774 AUGUSTUS intron 8104 8834 1 - . transcript_id "g118.t1"; gene_id "g118"; >! chr2L_5267678-5278774 AUGUSTUS intron 9055 9258 0.99 - . transcript_id "g118.t1"; gene_id "g118"; >! chr2L_5267678-5278774 AUGUSTUS intron 9504 10280 0.87 - . transcript_id "g118.t1"; gene_id "g118"; >--- 3186,3189 ---- >! chr2L_5267678-5278774 AUGUSTUS intron 5914 6341 0.84 - . transcript_id "g118.t1"; gene_id "g118"; >! chr2L_5267678-5278774 AUGUSTUS intron 8104 8834 0.97 - . transcript_id "g118.t1"; gene_id "g118"; >! chr2L_5267678-5278774 AUGUSTUS intron 9055 9258 1 - . transcript_id "g118.t1"; gene_id "g118"; >! chr2L_5267678-5278774 AUGUSTUS intron 9504 10280 0.78 - . transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 3192 **** >! chr2L_5267678-5278774 AUGUSTUS CDS 5484 5913 0.78 - 1 transcript_id "g118.t1"; gene_id "g118"; >--- 3192 ---- >! chr2L_5267678-5278774 AUGUSTUS CDS 5484 5913 0.84 - 1 transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 3194 **** >! chr2L_5267678-5278774 AUGUSTUS CDS 8835 9054 0.99 - 0 transcript_id "g118.t1"; gene_id "g118"; >--- 3194 ---- >! chr2L_5267678-5278774 AUGUSTUS CDS 8835 9054 1 - 0 transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 3196 **** >! chr2L_5267678-5278774 AUGUSTUS CDS 10281 10512 0.87 - 0 transcript_id "g118.t1"; gene_id "g118"; >--- 3196 ---- >! chr2L_5267678-5278774 AUGUSTUS CDS 10281 10512 0.78 - 0 transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 3239,3240 **** >! chr2L_5544869-5549657 AUGUSTUS gene 2947 4626 0.86 + . g120 >! chr2L_5544869-5549657 AUGUSTUS transcript 2947 4626 0.86 + . g120.t1 >--- 3239,3240 ---- >! chr2L_5544869-5549657 AUGUSTUS gene 2947 4626 0.92 + . g120 >! chr2L_5544869-5549657 AUGUSTUS transcript 2947 4626 0.92 + . g120.t1 >*************** >*** 3244 **** >! chr2L_5544869-5549657 AUGUSTUS intron 3842 4575 0.86 + . transcript_id "g120.t1"; gene_id "g120"; >--- 3244 ---- >! chr2L_5544869-5549657 AUGUSTUS intron 3842 4575 0.92 + . transcript_id "g120.t1"; gene_id "g120"; >*************** >*** 3247,3248 **** >! chr2L_5544869-5549657 AUGUSTUS CDS 3300 3841 0.86 + 2 transcript_id "g120.t1"; gene_id "g120"; >! chr2L_5544869-5549657 AUGUSTUS CDS 4576 4626 0.86 + 0 transcript_id "g120.t1"; gene_id "g120"; >--- 3247,3248 ---- >! chr2L_5544869-5549657 AUGUSTUS CDS 3300 3841 0.92 + 2 transcript_id "g120.t1"; gene_id "g120"; >! chr2L_5544869-5549657 AUGUSTUS CDS 4576 4626 0.92 + 0 transcript_id "g120.t1"; gene_id "g120"; >*************** >*** 3266,3267 **** >! chr2L_5663949-5675679 AUGUSTUS gene 5001 6731 0.53 + . g121 >! chr2L_5663949-5675679 AUGUSTUS transcript 5001 6731 0.53 + . g121.t1 >--- 3266,3267 ---- >! chr2L_5663949-5675679 AUGUSTUS gene 5001 6731 0.48 + . g121 >! chr2L_5663949-5675679 AUGUSTUS transcript 5001 6731 0.48 + . g121.t1 >*************** >*** 3269 **** >! chr2L_5663949-5675679 AUGUSTUS CDS 5001 6731 0.53 + 0 transcript_id "g121.t1"; gene_id "g121"; >--- 3269 ---- >! chr2L_5663949-5675679 AUGUSTUS CDS 5001 6731 0.48 + 0 transcript_id "g121.t1"; gene_id "g121"; >*************** >*** 3293,3294 **** >! chr2L_5795870-5802205 AUGUSTUS gene 5001 6017 1 - . g122 >! chr2L_5795870-5802205 AUGUSTUS transcript 5001 6017 1 - . g122.t1 >--- 3293,3294 ---- >! chr2L_5795870-5802205 AUGUSTUS gene 5001 6017 0.98 - . g122 >! chr2L_5795870-5802205 AUGUSTUS transcript 5001 6017 0.98 - . g122.t1 >*************** >*** 3296 **** >! chr2L_5795870-5802205 AUGUSTUS intron 5740 5802 1 - . transcript_id "g122.t1"; gene_id "g122"; >--- 3296 ---- >! chr2L_5795870-5802205 AUGUSTUS intron 5740 5802 0.98 - . transcript_id "g122.t1"; gene_id "g122"; >*************** >*** 3298 **** >! chr2L_5795870-5802205 AUGUSTUS CDS 5803 6017 1 - 0 transcript_id "g122.t1"; gene_id "g122"; >--- 3298 ---- >! chr2L_5795870-5802205 AUGUSTUS CDS 5803 6017 0.98 - 0 transcript_id "g122.t1"; gene_id "g122"; >*************** >*** 3328,3330 **** >! chr2L_5959972-5964901 AUGUSTUS gene 1 288 0.83 - . g123 >! chr2L_5959972-5964901 AUGUSTUS transcript 1 288 0.83 - . g123.t1 >! chr2L_5959972-5964901 AUGUSTUS CDS 1 288 0.83 - 0 transcript_id "g123.t1"; gene_id "g123"; >--- 3328,3330 ---- >! chr2L_5959972-5964901 AUGUSTUS gene 1 288 0.91 - . g123 >! chr2L_5959972-5964901 AUGUSTUS transcript 1 288 0.91 - . g123.t1 >! chr2L_5959972-5964901 AUGUSTUS CDS 1 288 0.91 - 0 transcript_id "g123.t1"; gene_id "g123"; >*************** >*** 3360,3361 **** >! chr2L_6043110-6053643 AUGUSTUS gene 1 2408 0.87 - . g125 >! chr2L_6043110-6053643 AUGUSTUS transcript 1 2408 0.87 - . g125.t1 >--- 3360,3361 ---- >! chr2L_6043110-6053643 AUGUSTUS gene 1 2408 0.88 - . g125 >! chr2L_6043110-6053643 AUGUSTUS transcript 1 2408 0.88 - . g125.t1 >*************** >*** 3363,3364 **** >! chr2L_6043110-6053643 AUGUSTUS CDS 1 1242 0.97 - 2 transcript_id "g125.t1"; gene_id "g125"; >! chr2L_6043110-6053643 AUGUSTUS CDS 1319 2408 0.9 - 0 transcript_id "g125.t1"; gene_id "g125"; >--- 3363,3364 ---- >! chr2L_6043110-6053643 AUGUSTUS CDS 1 1242 0.99 - 2 transcript_id "g125.t1"; gene_id "g125"; >! chr2L_6043110-6053643 AUGUSTUS CDS 1319 2408 0.89 - 0 transcript_id "g125.t1"; gene_id "g125"; >*************** >*** 3381,3383 **** >! chr2L_6043110-6053643 AUGUSTUS intron 4672 5020 0.88 - . transcript_id "g126.t1"; gene_id "g126"; >! chr2L_6043110-6053643 AUGUSTUS CDS 3944 4671 0.86 - 2 transcript_id "g126.t1"; gene_id "g126"; >! chr2L_6043110-6053643 AUGUSTUS CDS 5021 5534 0.88 - 0 transcript_id "g126.t1"; gene_id "g126"; >--- 3381,3383 ---- >! chr2L_6043110-6053643 AUGUSTUS intron 4672 5020 0.89 - . transcript_id "g126.t1"; gene_id "g126"; >! chr2L_6043110-6053643 AUGUSTUS CDS 3944 4671 0.87 - 2 transcript_id "g126.t1"; gene_id "g126"; >! chr2L_6043110-6053643 AUGUSTUS CDS 5021 5534 0.9 - 0 transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 3393,3394 **** >! chr2L_6043110-6053643 AUGUSTUS gene 5768 7239 0.86 + . g127 >! chr2L_6043110-6053643 AUGUSTUS transcript 5768 7239 0.86 + . g127.t1 >--- 3393,3394 ---- >! chr2L_6043110-6053643 AUGUSTUS gene 5768 7239 0.93 + . g127 >! chr2L_6043110-6053643 AUGUSTUS transcript 5768 7239 0.93 + . g127.t1 >*************** >*** 3398 **** >! chr2L_6043110-6053643 AUGUSTUS intron 6524 6964 0.9 + . transcript_id "g127.t1"; gene_id "g127"; >--- 3398 ---- >! chr2L_6043110-6053643 AUGUSTUS intron 6524 6964 0.95 + . transcript_id "g127.t1"; gene_id "g127"; >*************** >*** 3402 **** >! chr2L_6043110-6053643 AUGUSTUS CDS 6965 7239 0.86 + 2 transcript_id "g127.t1"; gene_id "g127"; >--- 3402 ---- >! chr2L_6043110-6053643 AUGUSTUS CDS 6965 7239 0.93 + 2 transcript_id "g127.t1"; gene_id "g127"; >*************** >*** 3411,3412 **** >! chr2L_6043110-6053643 AUGUSTUS gene 8569 10149 0.96 + . g128 >! chr2L_6043110-6053643 AUGUSTUS transcript 8569 10149 0.96 + . g128.t1 >--- 3411,3412 ---- >! chr2L_6043110-6053643 AUGUSTUS gene 8569 10149 0.98 + . g128 >! chr2L_6043110-6053643 AUGUSTUS transcript 8569 10149 0.98 + . g128.t1 >*************** >*** 3416 **** >! chr2L_6043110-6053643 AUGUSTUS CDS 8569 8913 0.96 + 0 transcript_id "g128.t1"; gene_id "g128"; >--- 3416 ---- >! chr2L_6043110-6053643 AUGUSTUS CDS 8569 8913 0.98 + 0 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 3450,3451 **** >! chr2L_6363141-6371803 AUGUSTUS gene 5001 6959 0.99 + . g129 >! chr2L_6363141-6371803 AUGUSTUS transcript 5001 6959 0.99 + . g129.t1 >--- 3450,3451 ---- >! chr2L_6363141-6371803 AUGUSTUS gene 5001 6959 1 + . g129 >! chr2L_6363141-6371803 AUGUSTUS transcript 5001 6959 1 + . g129.t1 >*************** >*** 3453 **** >! chr2L_6363141-6371803 AUGUSTUS CDS 5001 6959 0.99 + 0 transcript_id "g129.t1"; gene_id "g129"; >--- 3453 ---- >! chr2L_6363141-6371803 AUGUSTUS CDS 5001 6959 1 + 0 transcript_id "g129.t1"; gene_id "g129"; >*************** >*** 3479,3480 **** >! chr2L_6463845-6474245 AUGUSTUS gene 2680 3764 0.51 - . g130 >! chr2L_6463845-6474245 AUGUSTUS transcript 2680 3764 0.51 - . g130.t1 >--- 3479,3480 ---- >! chr2L_6463845-6474245 AUGUSTUS gene 2680 3764 0.6 - . g130 >! chr2L_6463845-6474245 AUGUSTUS transcript 2680 3764 0.6 - . g130.t1 >*************** >*** 3483 **** >! chr2L_6463845-6474245 AUGUSTUS intron 3496 3554 0.92 - . transcript_id "g130.t1"; gene_id "g130"; >--- 3483 ---- >! chr2L_6463845-6474245 AUGUSTUS intron 3496 3554 0.93 - . transcript_id "g130.t1"; gene_id "g130"; >*************** >*** 3485,3486 **** >! chr2L_6463845-6474245 AUGUSTUS CDS 2975 3495 0.92 - 0 transcript_id "g130.t1"; gene_id "g130"; >! chr2L_6463845-6474245 AUGUSTUS CDS 3555 3764 0.55 - 0 transcript_id "g130.t1"; gene_id "g130"; >--- 3485,3486 ---- >! chr2L_6463845-6474245 AUGUSTUS CDS 2975 3495 0.93 - 0 transcript_id "g130.t1"; gene_id "g130"; >! chr2L_6463845-6474245 AUGUSTUS CDS 3555 3764 0.64 - 0 transcript_id "g130.t1"; gene_id "g130"; >*************** >*** 3527,3531 **** >! chr2L_6478973-6487353 AUGUSTUS gene 1 8137 0.56 + . g132 >! chr2L_6478973-6487353 AUGUSTUS transcript 1 8137 0.56 + . g132.t1 >! chr2L_6478973-6487353 AUGUSTUS intron 1 3010 0.57 + . transcript_id "g132.t1"; gene_id "g132"; >! chr2L_6478973-6487353 AUGUSTUS intron 7140 7199 0.98 + . transcript_id "g132.t1"; gene_id "g132"; >! chr2L_6478973-6487353 AUGUSTUS intron 7381 7518 0.99 + . transcript_id "g132.t1"; gene_id "g132"; >--- 3527,3531 ---- >! chr2L_6478973-6487353 AUGUSTUS gene 1 8137 0.53 + . g132 >! chr2L_6478973-6487353 AUGUSTUS transcript 1 8137 0.53 + . g132.t1 >! chr2L_6478973-6487353 AUGUSTUS intron 1 3010 0.53 + . transcript_id "g132.t1"; gene_id "g132"; >! chr2L_6478973-6487353 AUGUSTUS intron 7140 7199 0.99 + . transcript_id "g132.t1"; gene_id "g132"; >! chr2L_6478973-6487353 AUGUSTUS intron 7381 7518 1 + . transcript_id "g132.t1"; gene_id "g132"; >*************** >*** 3533 **** >! chr2L_6478973-6487353 AUGUSTUS CDS 7200 7380 0.98 + 2 transcript_id "g132.t1"; gene_id "g132"; >--- 3533 ---- >! chr2L_6478973-6487353 AUGUSTUS CDS 7200 7380 0.99 + 2 transcript_id "g132.t1"; gene_id "g132"; >*************** >*** 3566,3567 **** >! chr2L_6557697-6564621 AUGUSTUS gene 207 1349 0.89 + . g133 >! chr2L_6557697-6564621 AUGUSTUS transcript 207 1349 0.89 + . g133.t1 >--- 3566,3567 ---- >! chr2L_6557697-6564621 AUGUSTUS gene 207 1349 0.97 + . g133 >! chr2L_6557697-6564621 AUGUSTUS transcript 207 1349 0.97 + . g133.t1 >*************** >*** 3569 **** >! chr2L_6557697-6564621 AUGUSTUS intron 289 721 0.97 + . transcript_id "g133.t1"; gene_id "g133"; >--- 3569 ---- >! chr2L_6557697-6564621 AUGUSTUS intron 289 721 0.99 + . transcript_id "g133.t1"; gene_id "g133"; >*************** >*** 3571 **** >! chr2L_6557697-6564621 AUGUSTUS CDS 207 288 0.96 + 0 transcript_id "g133.t1"; gene_id "g133"; >--- 3571 ---- >! chr2L_6557697-6564621 AUGUSTUS CDS 207 288 0.99 + 0 transcript_id "g133.t1"; gene_id "g133"; >*************** >*** 3573 **** >! chr2L_6557697-6564621 AUGUSTUS CDS 1243 1349 0.93 + 2 transcript_id "g133.t1"; gene_id "g133"; >--- 3573 ---- >! chr2L_6557697-6564621 AUGUSTUS CDS 1243 1349 0.98 + 2 transcript_id "g133.t1"; gene_id "g133"; >*************** >*** 3580,3581 **** >! chr2L_6557697-6564621 AUGUSTUS gene 1835 2355 0.9 + . g134 >! chr2L_6557697-6564621 AUGUSTUS transcript 1835 2355 0.9 + . g134.t1 >--- 3580,3581 ---- >! chr2L_6557697-6564621 AUGUSTUS gene 1835 2355 0.93 + . g134 >! chr2L_6557697-6564621 AUGUSTUS transcript 1835 2355 0.93 + . g134.t1 >*************** >*** 3583,3585 **** >! chr2L_6557697-6564621 AUGUSTUS intron 2016 2071 0.96 + . transcript_id "g134.t1"; gene_id "g134"; >! chr2L_6557697-6564621 AUGUSTUS CDS 1835 2015 0.9 + 0 transcript_id "g134.t1"; gene_id "g134"; >! chr2L_6557697-6564621 AUGUSTUS CDS 2072 2355 0.96 + 2 transcript_id "g134.t1"; gene_id "g134"; >--- 3583,3585 ---- >! chr2L_6557697-6564621 AUGUSTUS intron 2016 2071 0.94 + . transcript_id "g134.t1"; gene_id "g134"; >! chr2L_6557697-6564621 AUGUSTUS CDS 1835 2015 0.93 + 0 transcript_id "g134.t1"; gene_id "g134"; >! chr2L_6557697-6564621 AUGUSTUS CDS 2072 2355 0.94 + 2 transcript_id "g134.t1"; gene_id "g134"; >*************** >*** 3592,3593 **** >! chr2L_6557697-6564621 AUGUSTUS gene 2477 3871 0.91 - . g135 >! chr2L_6557697-6564621 AUGUSTUS transcript 2477 3871 0.91 - . g135.t1 >--- 3592,3593 ---- >! chr2L_6557697-6564621 AUGUSTUS gene 2477 3871 0.85 - . g135 >! chr2L_6557697-6564621 AUGUSTUS transcript 2477 3871 0.85 - . g135.t1 >*************** >*** 3595 **** >! chr2L_6557697-6564621 AUGUSTUS CDS 2477 3871 0.91 - 0 transcript_id "g135.t1"; gene_id "g135"; >--- 3595 ---- >! chr2L_6557697-6564621 AUGUSTUS CDS 2477 3871 0.85 - 0 transcript_id "g135.t1"; gene_id "g135"; >*************** >*** 3638,3639 **** >! chr2L_6788527-6797487 AUGUSTUS gene 2113 4843 0.37 - . g137 >! chr2L_6788527-6797487 AUGUSTUS transcript 2113 4843 0.37 - . g137.t1 >--- 3638,3639 ---- >! chr2L_6788527-6797487 AUGUSTUS gene 2113 4843 0.48 - . g137 >! chr2L_6788527-6797487 AUGUSTUS transcript 2113 4843 0.48 - . g137.t1 >*************** >*** 3644 **** >! chr2L_6788527-6797487 AUGUSTUS intron 3112 3174 0.4 - . transcript_id "g137.t1"; gene_id "g137"; >--- 3644 ---- >! chr2L_6788527-6797487 AUGUSTUS intron 3112 3174 0.54 - . transcript_id "g137.t1"; gene_id "g137"; >*************** >*** 3649 **** >! chr2L_6788527-6797487 AUGUSTUS CDS 2992 3111 0.4 - 2 transcript_id "g137.t1"; gene_id "g137"; >--- 3649 ---- >! chr2L_6788527-6797487 AUGUSTUS CDS 2992 3111 0.54 - 2 transcript_id "g137.t1"; gene_id "g137"; >*************** >*** 3651 **** >! chr2L_6788527-6797487 AUGUSTUS CDS 4702 4843 0.98 - 0 transcript_id "g137.t1"; gene_id "g137"; >--- 3651 ---- >! chr2L_6788527-6797487 AUGUSTUS CDS 4702 4843 0.94 - 0 transcript_id "g137.t1"; gene_id "g137"; >*************** >*** 3660,3661 **** >! chr2L_6788527-6797487 AUGUSTUS gene 7377 8961 0.39 - . g138 >! chr2L_6788527-6797487 AUGUSTUS transcript 7377 8961 0.39 - . g138.t1 >--- 3660,3661 ---- >! chr2L_6788527-6797487 AUGUSTUS gene 7377 8961 0.3 - . g138 >! chr2L_6788527-6797487 AUGUSTUS transcript 7377 8961 0.3 - . g138.t1 >*************** >*** 3663,3666 **** >! chr2L_6788527-6797487 AUGUSTUS intron 7547 7810 0.76 - . transcript_id "g138.t1"; gene_id "g138"; >! chr2L_6788527-6797487 AUGUSTUS intron 8191 8961 0.54 - . transcript_id "g138.t1"; gene_id "g138"; >! chr2L_6788527-6797487 AUGUSTUS CDS 7377 7546 0.78 - 2 transcript_id "g138.t1"; gene_id "g138"; >! chr2L_6788527-6797487 AUGUSTUS CDS 7811 8190 0.75 - 1 transcript_id "g138.t1"; gene_id "g138"; >--- 3663,3666 ---- >! chr2L_6788527-6797487 AUGUSTUS intron 7547 7810 0.57 - . transcript_id "g138.t1"; gene_id "g138"; >! chr2L_6788527-6797487 AUGUSTUS intron 8191 8961 0.56 - . transcript_id "g138.t1"; gene_id "g138"; >! chr2L_6788527-6797487 AUGUSTUS CDS 7377 7546 0.59 - 2 transcript_id "g138.t1"; gene_id "g138"; >! chr2L_6788527-6797487 AUGUSTUS CDS 7811 8190 0.74 - 1 transcript_id "g138.t1"; gene_id "g138"; >*************** >*** 3709,3710 **** >! chr2L_6948895-6952350 AUGUSTUS gene 1645 3170 0.82 + . g140 >! chr2L_6948895-6952350 AUGUSTUS transcript 1645 3170 0.82 + . g140.t1 >--- 3709,3710 ---- >! chr2L_6948895-6952350 AUGUSTUS gene 1645 3170 0.81 + . g140 >! chr2L_6948895-6952350 AUGUSTUS transcript 1645 3170 0.81 + . g140.t1 >*************** >*** 3716 **** >! chr2L_6948895-6952350 AUGUSTUS CDS 1645 1715 0.82 + 0 transcript_id "g140.t1"; gene_id "g140"; >--- 3716 ---- >! chr2L_6948895-6952350 AUGUSTUS CDS 1645 1715 0.84 + 0 transcript_id "g140.t1"; gene_id "g140"; >*************** >*** 3720 **** >! chr2L_6948895-6952350 AUGUSTUS CDS 2733 3170 0.99 + 0 transcript_id "g140.t1"; gene_id "g140"; >--- 3720 ---- >! chr2L_6948895-6952350 AUGUSTUS CDS 2733 3170 0.97 + 0 transcript_id "g140.t1"; gene_id "g140"; >*************** >*** 3766,3767 **** >! chr2L_6952351-6956985 AUGUSTUS gene 2235 4522 0.85 - . g142 >! chr2L_6952351-6956985 AUGUSTUS transcript 2235 4522 0.85 - . g142.t1 >--- 3766,3767 ---- >! chr2L_6952351-6956985 AUGUSTUS gene 2235 4522 0.78 - . g142 >! chr2L_6952351-6956985 AUGUSTUS transcript 2235 4522 0.78 - . g142.t1 >*************** >*** 3771,3773 **** >! chr2L_6952351-6956985 AUGUSTUS CDS 2235 2852 0.88 - 0 transcript_id "g142.t1"; gene_id "g142"; >! chr2L_6952351-6956985 AUGUSTUS CDS 2907 3869 1 - 0 transcript_id "g142.t1"; gene_id "g142"; >! chr2L_6952351-6956985 AUGUSTUS CDS 4268 4522 0.97 - 0 transcript_id "g142.t1"; gene_id "g142"; >--- 3771,3773 ---- >! chr2L_6952351-6956985 AUGUSTUS CDS 2235 2852 0.8 - 0 transcript_id "g142.t1"; gene_id "g142"; >! chr2L_6952351-6956985 AUGUSTUS CDS 2907 3869 0.99 - 0 transcript_id "g142.t1"; gene_id "g142"; >! chr2L_6952351-6956985 AUGUSTUS CDS 4268 4522 0.98 - 0 transcript_id "g142.t1"; gene_id "g142"; >*************** >*** 3807,3808 **** >! chr2L_7424581-7430272 AUGUSTUS gene 2621 5292 0.41 + . g143 >! chr2L_7424581-7430272 AUGUSTUS transcript 2621 5292 0.41 + . g143.t1 >--- 3807,3808 ---- >! chr2L_7424581-7430272 AUGUSTUS gene 2621 5292 0.53 + . g143 >! chr2L_7424581-7430272 AUGUSTUS transcript 2621 5292 0.53 + . g143.t1 >*************** >*** 3810,3812 **** >! chr2L_7424581-7430272 AUGUSTUS intron 2782 3466 0.91 + . transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS intron 3637 3700 1 + . transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS intron 4100 4345 0.47 + . transcript_id "g143.t1"; gene_id "g143"; >--- 3810,3812 ---- >! chr2L_7424581-7430272 AUGUSTUS intron 2782 3466 0.92 + . transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS intron 3637 3700 0.99 + . transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS intron 4100 4345 0.58 + . transcript_id "g143.t1"; gene_id "g143"; >*************** >*** 3816,3819 **** >! chr2L_7424581-7430272 AUGUSTUS CDS 2621 2781 0.93 + 0 transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS CDS 3467 3636 0.98 + 1 transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS CDS 3701 4099 0.96 + 2 transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS CDS 4346 4524 0.5 + 2 transcript_id "g143.t1"; gene_id "g143"; >--- 3816,3819 ---- >! chr2L_7424581-7430272 AUGUSTUS CDS 2621 2781 0.96 + 0 transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS CDS 3467 3636 0.95 + 1 transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS CDS 3701 4099 0.94 + 2 transcript_id "g143.t1"; gene_id "g143"; >! chr2L_7424581-7430272 AUGUSTUS CDS 4346 4524 0.61 + 2 transcript_id "g143.t1"; gene_id "g143"; >*************** >*** 3822 **** >! chr2L_7424581-7430272 AUGUSTUS CDS 5163 5292 0.99 + 1 transcript_id "g143.t1"; gene_id "g143"; >--- 3822 ---- >! chr2L_7424581-7430272 AUGUSTUS CDS 5163 5292 1 + 1 transcript_id "g143.t1"; gene_id "g143"; >*************** >*** 3849,3850 **** >! chr2L_7498178-7534396 AUGUSTUS gene 848 4333 0.91 - . g144 >! chr2L_7498178-7534396 AUGUSTUS transcript 848 4333 0.91 - . g144.t1 >--- 3849,3850 ---- >! chr2L_7498178-7534396 AUGUSTUS gene 848 4333 0.93 - . g144 >! chr2L_7498178-7534396 AUGUSTUS transcript 848 4333 0.93 - . g144.t1 >*************** >*** 3854 **** >! chr2L_7498178-7534396 AUGUSTUS intron 3349 4300 0.91 - . transcript_id "g144.t1"; gene_id "g144"; >--- 3854 ---- >! chr2L_7498178-7534396 AUGUSTUS intron 3349 4300 0.93 - . transcript_id "g144.t1"; gene_id "g144"; >*************** >*** 3858 **** >! chr2L_7498178-7534396 AUGUSTUS CDS 4301 4333 0.91 - 0 transcript_id "g144.t1"; gene_id "g144"; >--- 3858 ---- >! chr2L_7498178-7534396 AUGUSTUS CDS 4301 4333 0.93 - 0 transcript_id "g144.t1"; gene_id "g144"; >*************** >*** 3872,3873 **** >! chr2L_7498178-7534396 AUGUSTUS gene 31007 31219 0.86 - . g145 >! chr2L_7498178-7534396 AUGUSTUS transcript 31007 31219 0.86 - . g145.t1 >--- 3872,3873 ---- >! chr2L_7498178-7534396 AUGUSTUS gene 31007 31219 0.93 - . g145 >! chr2L_7498178-7534396 AUGUSTUS transcript 31007 31219 0.93 - . g145.t1 >*************** >*** 3875 **** >! chr2L_7498178-7534396 AUGUSTUS CDS 31007 31219 0.86 - 0 transcript_id "g145.t1"; gene_id "g145"; >--- 3875 ---- >! chr2L_7498178-7534396 AUGUSTUS CDS 31007 31219 0.93 - 0 transcript_id "g145.t1"; gene_id "g145"; >*************** >*** 3905,3906 **** >! chr2L_7693289-7706421 AUGUSTUS gene 620 8133 0.48 - . g146 >! chr2L_7693289-7706421 AUGUSTUS transcript 620 8133 0.48 - . g146.t1 >--- 3905,3906 ---- >! chr2L_7693289-7706421 AUGUSTUS gene 620 8133 0.5 - . g146 >! chr2L_7693289-7706421 AUGUSTUS transcript 620 8133 0.5 - . g146.t1 >*************** >*** 3909,3911 **** >! chr2L_7693289-7706421 AUGUSTUS intron 2684 2739 0.97 - . transcript_id "g146.t1"; gene_id "g146"; >! chr2L_7693289-7706421 AUGUSTUS intron 2919 5085 0.97 - . transcript_id "g146.t1"; gene_id "g146"; >! chr2L_7693289-7706421 AUGUSTUS intron 5180 5436 0.84 - . transcript_id "g146.t1"; gene_id "g146"; >--- 3909,3911 ---- >! chr2L_7693289-7706421 AUGUSTUS intron 2684 2739 0.96 - . transcript_id "g146.t1"; gene_id "g146"; >! chr2L_7693289-7706421 AUGUSTUS intron 2919 5085 0.95 - . transcript_id "g146.t1"; gene_id "g146"; >! chr2L_7693289-7706421 AUGUSTUS intron 5180 5436 0.81 - . transcript_id "g146.t1"; gene_id "g146"; >*************** >*** 3913 **** >! chr2L_7693289-7706421 AUGUSTUS intron 6029 6090 0.57 - . transcript_id "g146.t1"; gene_id "g146"; >--- 3913 ---- >! chr2L_7693289-7706421 AUGUSTUS intron 6029 6090 0.61 - . transcript_id "g146.t1"; gene_id "g146"; >*************** >*** 3917,3918 **** >! chr2L_7693289-7706421 AUGUSTUS CDS 2740 2918 0.97 - 1 transcript_id "g146.t1"; gene_id "g146"; >! chr2L_7693289-7706421 AUGUSTUS CDS 5086 5179 0.84 - 2 transcript_id "g146.t1"; gene_id "g146"; >--- 3917,3918 ---- >! chr2L_7693289-7706421 AUGUSTUS CDS 2740 2918 0.96 - 1 transcript_id "g146.t1"; gene_id "g146"; >! chr2L_7693289-7706421 AUGUSTUS CDS 5086 5179 0.81 - 2 transcript_id "g146.t1"; gene_id "g146"; >*************** >*** 3920 **** >! chr2L_7693289-7706421 AUGUSTUS CDS 5767 6028 0.57 - 1 transcript_id "g146.t1"; gene_id "g146"; >--- 3920 ---- >! chr2L_7693289-7706421 AUGUSTUS CDS 5767 6028 0.61 - 1 transcript_id "g146.t1"; gene_id "g146"; >*************** >*** 3942,3943 **** >! chr2L_7693289-7706421 AUGUSTUS gene 12185 12835 0.23 + . g147 >! chr2L_7693289-7706421 AUGUSTUS transcript 12185 12835 0.23 + . g147.t1 >--- 3942,3943 ---- >! chr2L_7693289-7706421 AUGUSTUS gene 12185 12835 0.22 + . g147 >! chr2L_7693289-7706421 AUGUSTUS transcript 12185 12835 0.22 + . g147.t1 >*************** >*** 3945 **** >! chr2L_7693289-7706421 AUGUSTUS intron 12211 12375 0.23 + . transcript_id "g147.t1"; gene_id "g147"; >--- 3945 ---- >! chr2L_7693289-7706421 AUGUSTUS intron 12211 12375 0.22 + . transcript_id "g147.t1"; gene_id "g147"; >*************** >*** 3947 **** >! chr2L_7693289-7706421 AUGUSTUS CDS 12376 12835 0.28 + 1 transcript_id "g147.t1"; gene_id "g147"; >--- 3947 ---- >! chr2L_7693289-7706421 AUGUSTUS CDS 12376 12835 0.33 + 1 transcript_id "g147.t1"; gene_id "g147"; >*************** >*** 3969 **** >! chr2L_7775118-7782118 AUGUSTUS CDS 868 2868 0.98 - 0 transcript_id "g148.t1"; gene_id "g148"; >--- 3969 ---- >! chr2L_7775118-7782118 AUGUSTUS CDS 868 2868 0.99 - 0 transcript_id "g148.t1"; gene_id "g148"; >*************** >*** 3982,3983 **** >! chr2L_7775118-7782118 AUGUSTUS gene 5001 6128 0.99 + . g149 >! chr2L_7775118-7782118 AUGUSTUS transcript 5001 6128 0.99 + . g149.t1 >--- 3982,3983 ---- >! chr2L_7775118-7782118 AUGUSTUS gene 5001 6128 0.96 + . g149 >! chr2L_7775118-7782118 AUGUSTUS transcript 5001 6128 0.96 + . g149.t1 >*************** >*** 3986,3987 **** >! chr2L_7775118-7782118 AUGUSTUS CDS 5001 5574 0.99 + 0 transcript_id "g149.t1"; gene_id "g149"; >! chr2L_7775118-7782118 AUGUSTUS CDS 5644 6128 1 + 2 transcript_id "g149.t1"; gene_id "g149"; >--- 3986,3987 ---- >! chr2L_7775118-7782118 AUGUSTUS CDS 5001 5574 0.98 + 0 transcript_id "g149.t1"; gene_id "g149"; >! chr2L_7775118-7782118 AUGUSTUS CDS 5644 6128 0.98 + 2 transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 3996,3997 **** >! chr2L_7775118-7782118 AUGUSTUS gene 6518 6751 0.91 + . g150 >! chr2L_7775118-7782118 AUGUSTUS transcript 6518 6751 0.91 + . g150.t1 >--- 3996,3997 ---- >! chr2L_7775118-7782118 AUGUSTUS gene 6518 6751 0.96 + . g150 >! chr2L_7775118-7782118 AUGUSTUS transcript 6518 6751 0.96 + . g150.t1 >*************** >*** 3999 **** >! chr2L_7775118-7782118 AUGUSTUS CDS 6518 6751 0.91 + 0 transcript_id "g150.t1"; gene_id "g150"; >--- 3999 ---- >! chr2L_7775118-7782118 AUGUSTUS CDS 6518 6751 0.96 + 0 transcript_id "g150.t1"; gene_id "g150"; >*************** >*** 4021,4023 **** >! chr2L_7791930-7800999 AUGUSTUS gene 1 3905 0.89 - . g151 >! chr2L_7791930-7800999 AUGUSTUS transcript 1 3905 0.89 - . g151.t1 >! chr2L_7791930-7800999 AUGUSTUS intron 1 9 0.92 - . transcript_id "g151.t1"; gene_id "g151"; >--- 4021,4023 ---- >! chr2L_7791930-7800999 AUGUSTUS gene 1 3905 0.93 - . g151 >! chr2L_7791930-7800999 AUGUSTUS transcript 1 3905 0.93 - . g151.t1 >! chr2L_7791930-7800999 AUGUSTUS intron 1 9 0.94 - . transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 4027,4028 **** >! chr2L_7791930-7800999 AUGUSTUS intron 2598 2662 0.98 - . transcript_id "g151.t1"; gene_id "g151"; >! chr2L_7791930-7800999 AUGUSTUS intron 2840 3580 0.97 - . transcript_id "g151.t1"; gene_id "g151"; >--- 4027,4028 ---- >! chr2L_7791930-7800999 AUGUSTUS intron 2598 2662 0.99 - . transcript_id "g151.t1"; gene_id "g151"; >! chr2L_7791930-7800999 AUGUSTUS intron 2840 3580 0.99 - . transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 4030 **** >! chr2L_7791930-7800999 AUGUSTUS CDS 10 186 0.92 - 2 transcript_id "g151.t1"; gene_id "g151"; >--- 4030 ---- >! chr2L_7791930-7800999 AUGUSTUS CDS 10 186 0.94 - 2 transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 4034 **** >! chr2L_7791930-7800999 AUGUSTUS CDS 2663 2839 0.97 - 0 transcript_id "g151.t1"; gene_id "g151"; >--- 4034 ---- >! chr2L_7791930-7800999 AUGUSTUS CDS 2663 2839 0.99 - 0 transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 4054 **** >! chr2L_7791930-7800999 AUGUSTUS intron 5398 5467 1 - . transcript_id "g152.t1"; gene_id "g152"; >--- 4054 ---- >! chr2L_7791930-7800999 AUGUSTUS intron 5398 5467 0.99 - . transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 4056,4059 **** >! chr2L_7791930-7800999 AUGUSTUS intron 6686 7379 0.87 - . transcript_id "g152.t1"; gene_id "g152"; >! chr2L_7791930-7800999 AUGUSTUS CDS 5001 5397 1 - 1 transcript_id "g152.t1"; gene_id "g152"; >! chr2L_7791930-7800999 AUGUSTUS CDS 5468 5803 1 - 1 transcript_id "g152.t1"; gene_id "g152"; >! chr2L_7791930-7800999 AUGUSTUS CDS 6234 6685 0.87 - 0 transcript_id "g152.t1"; gene_id "g152"; >--- 4056,4059 ---- >! chr2L_7791930-7800999 AUGUSTUS intron 6686 7379 0.88 - . transcript_id "g152.t1"; gene_id "g152"; >! chr2L_7791930-7800999 AUGUSTUS CDS 5001 5397 0.99 - 1 transcript_id "g152.t1"; gene_id "g152"; >! chr2L_7791930-7800999 AUGUSTUS CDS 5468 5803 0.99 - 1 transcript_id "g152.t1"; gene_id "g152"; >! chr2L_7791930-7800999 AUGUSTUS CDS 6234 6685 0.88 - 0 transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 4070,4071 **** >! chr2L_7791930-7800999 AUGUSTUS gene 8875 9070 0.43 + . g153 >! chr2L_7791930-7800999 AUGUSTUS transcript 8875 9070 0.43 + . g153.t1 >--- 4070,4071 ---- >! chr2L_7791930-7800999 AUGUSTUS gene 8875 9070 0.31 + . g153 >! chr2L_7791930-7800999 AUGUSTUS transcript 8875 9070 0.31 + . g153.t1 >*************** >*** 4073 **** >! chr2L_7791930-7800999 AUGUSTUS CDS 8875 9070 0.43 + 0 transcript_id "g153.t1"; gene_id "g153"; >--- 4073 ---- >! chr2L_7791930-7800999 AUGUSTUS CDS 8875 9070 0.31 + 0 transcript_id "g153.t1"; gene_id "g153"; >*************** >*** 4098,4100 **** >! chr2L_7801000-7810996 AUGUSTUS gene 1 512 0.98 + . g154 >! chr2L_7801000-7810996 AUGUSTUS transcript 1 512 0.98 + . g154.t1 >! chr2L_7801000-7810996 AUGUSTUS CDS 1 512 0.98 + 2 transcript_id "g154.t1"; gene_id "g154"; >--- 4098,4100 ---- >! chr2L_7801000-7810996 AUGUSTUS gene 1 512 0.97 + . g154 >! chr2L_7801000-7810996 AUGUSTUS transcript 1 512 0.97 + . g154.t1 >! chr2L_7801000-7810996 AUGUSTUS CDS 1 512 0.97 + 2 transcript_id "g154.t1"; gene_id "g154"; >*************** >*** 4152,4153 **** >! chr2L_8007788-8014459 AUGUSTUS gene 655 1672 0.89 - . g156 >! chr2L_8007788-8014459 AUGUSTUS transcript 655 1672 0.89 - . g156.t1 >--- 4152,4153 ---- >! chr2L_8007788-8014459 AUGUSTUS gene 655 1672 0.85 - . g156 >! chr2L_8007788-8014459 AUGUSTUS transcript 655 1672 0.85 - . g156.t1 >*************** >*** 4155 **** >! chr2L_8007788-8014459 AUGUSTUS intron 866 1160 0.89 - . transcript_id "g156.t1"; gene_id "g156"; >--- 4155 ---- >! chr2L_8007788-8014459 AUGUSTUS intron 866 1160 0.85 - . transcript_id "g156.t1"; gene_id "g156"; >*************** >*** 4158 **** >! chr2L_8007788-8014459 AUGUSTUS CDS 1161 1408 0.94 - 0 transcript_id "g156.t1"; gene_id "g156"; >--- 4158 ---- >! chr2L_8007788-8014459 AUGUSTUS CDS 1161 1408 0.9 - 0 transcript_id "g156.t1"; gene_id "g156"; > > >====================================================================== >FAIL: test_ab_initio_prediction (__main__.TestAugustus) >---------------------------------------------------------------------- >Traceback (most recent call last): > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 480, in test_ab_initio_prediction > self.assertEqualFolders(reffolder, resfolder) > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders > self.assertEqual(diff, '', diff) >AssertionError: '*** expected_results/test_ab_initio_predi[405399 chars]";\n' != '' : *** expected_results/test_ab_initio_prediction/augustus.gff >--- results/test_ab_initio_prediction/augustus.gff >*************** >*** 5,8 **** >! chrI AUGUSTUS gene 1 10595 0.13 - . g1 >! chrI AUGUSTUS transcript 1 10595 0.13 - . g1.t1 >! chrI AUGUSTUS internal 127 217 0.53 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 1067 1195 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 5,8 ---- >! chrI AUGUSTUS gene 1 10595 0.16 - . g1 >! chrI AUGUSTUS transcript 1 10595 0.16 - . g1.t1 >! chrI AUGUSTUS internal 127 217 0.57 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 1067 1195 1 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 10,26 **** >! chrI AUGUSTUS internal 7324 7568 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 8590 8772 0.84 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 9832 9961 0.99 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 10006 10100 0.87 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 10167 10259 0.57 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS initial 10422 10481 0.85 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 1 126 0.48 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 218 1066 0.62 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 1196 6131 0.99 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 6307 7323 0.99 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 7569 8589 0.91 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 8773 9831 0.99 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 9962 10005 0.87 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 10101 10166 0.57 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 10260 10421 0.57 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 127 217 0.53 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 1067 1195 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 10,26 ---- >! chrI AUGUSTUS internal 7324 7568 0.93 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 8590 8772 0.72 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 9832 9961 0.97 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 10006 10100 0.89 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS internal 10167 10259 0.63 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS initial 10422 10481 0.84 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 1 126 0.55 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 218 1066 0.65 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 1196 6131 1 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 6307 7323 0.98 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 7569 8589 0.84 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 8773 9831 0.97 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 9962 10005 0.89 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 10101 10166 0.63 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS intron 10260 10421 0.59 - . transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 127 217 0.57 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 1067 1195 1 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 28,33 **** >! chrI AUGUSTUS CDS 7324 7568 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 8590 8772 0.84 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 9832 9961 0.99 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 10006 10100 0.87 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 10167 10259 0.57 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 10422 10481 0.85 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 28,33 ---- >! chrI AUGUSTUS CDS 7324 7568 0.93 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 8590 8772 0.72 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 9832 9961 0.97 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 10006 10100 0.89 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 10167 10259 0.63 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chrI AUGUSTUS CDS 10422 10481 0.84 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 35 **** >! chrI AUGUSTUS 5'-UTR 10482 10595 0.62 - . transcript_id "g1.t1"; gene_id "g1"; >--- 35 ---- >! chrI AUGUSTUS 5'-UTR 10482 10595 0.72 - . transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 54,55 **** >! chrI AUGUSTUS gene 26176 33836 0.03 + . g2 >! chrI AUGUSTUS transcript 26176 33836 0.03 + . g2.t1 >--- 54,55 ---- >! chrI AUGUSTUS gene 26176 33836 0.02 + . g2 >! chrI AUGUSTUS transcript 26176 33836 0.02 + . g2.t1 >*************** >*** 57 **** >! chrI AUGUSTUS 5'-UTR 26176 26414 0.27 + . transcript_id "g2.t1"; gene_id "g2"; >--- 57 ---- >! chrI AUGUSTUS 5'-UTR 26176 26414 0.43 + . transcript_id "g2.t1"; gene_id "g2"; >*************** >*** 59 **** >! chrI AUGUSTUS initial 26415 26516 0.62 + 0 transcript_id "g2.t1"; gene_id "g2"; >--- 59 ---- >! chrI AUGUSTUS initial 26415 26516 0.75 + 0 transcript_id "g2.t1"; gene_id "g2"; >*************** >*** 61,66 **** >! chrI AUGUSTUS internal 28208 28339 0.99 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS internal 28391 28596 0.9 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS internal 29676 30014 0.52 + 1 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS internal 31652 32129 0.98 + 1 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS internal 33277 33379 0.41 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS terminal 33641 33660 0.4 + 2 transcript_id "g2.t1"; gene_id "g2"; >--- 61,66 ---- >! chrI AUGUSTUS internal 28208 28339 1 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS internal 28391 28596 0.89 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS internal 29676 30014 0.49 + 1 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS internal 31652 32129 1 + 1 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS internal 33277 33379 0.36 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS terminal 33641 33660 0.36 + 2 transcript_id "g2.t1"; gene_id "g2"; >*************** >*** 69,70 **** >! chrI AUGUSTUS intron 28340 28390 0.98 + . transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS intron 28597 29675 0.92 + . transcript_id "g2.t1"; gene_id "g2"; >--- 69,70 ---- >! chrI AUGUSTUS intron 28340 28390 1 + . transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS intron 28597 29675 0.89 + . transcript_id "g2.t1"; gene_id "g2"; >*************** >*** 72,74 **** >! chrI AUGUSTUS intron 32130 33276 0.56 + . transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS intron 33380 33640 0.4 + . transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 26415 26516 0.62 + 0 transcript_id "g2.t1"; gene_id "g2"; >--- 72,74 ---- >! chrI AUGUSTUS intron 32130 33276 0.64 + . transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS intron 33380 33640 0.36 + . transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 26415 26516 0.75 + 0 transcript_id "g2.t1"; gene_id "g2"; >*************** >*** 76,81 **** >! chrI AUGUSTUS CDS 28208 28339 0.99 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 28391 28596 0.9 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 29676 30014 0.52 + 1 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 31652 32129 0.98 + 1 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 33277 33379 0.41 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 33641 33660 0.4 + 2 transcript_id "g2.t1"; gene_id "g2"; >--- 76,81 ---- >! chrI AUGUSTUS CDS 28208 28339 1 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 28391 28596 0.89 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 29676 30014 0.49 + 1 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 31652 32129 1 + 1 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 33277 33379 0.36 + 0 transcript_id "g2.t1"; gene_id "g2"; >! chrI AUGUSTUS CDS 33641 33660 0.36 + 2 transcript_id "g2.t1"; gene_id "g2"; >*************** >*** 83 **** >! chrI AUGUSTUS 3'-UTR 33661 33836 0.17 + . transcript_id "g2.t1"; gene_id "g2"; >--- 83 ---- >! chrI AUGUSTUS 3'-UTR 33661 33836 0.13 + . transcript_id "g2.t1"; gene_id "g2"; >*************** >*** 107 **** >! chrI AUGUSTUS 3'-UTR 34327 34532 0.63 - . transcript_id "g3.t1"; gene_id "g3"; >--- 107 ---- >! chrI AUGUSTUS 3'-UTR 34327 34532 0.65 - . transcript_id "g3.t1"; gene_id "g3"; >*************** >*** 109,110 **** >! chrI AUGUSTUS terminal 34533 34712 0.69 - 0 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS internal 35686 36011 1 - 2 transcript_id "g3.t1"; gene_id "g3"; >--- 109,110 ---- >! chrI AUGUSTUS terminal 34533 34712 0.76 - 0 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS internal 35686 36011 0.99 - 2 transcript_id "g3.t1"; gene_id "g3"; >*************** >*** 112,116 **** >! chrI AUGUSTUS internal 41367 42555 0.49 - 2 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS internal 42604 42740 0.49 - 1 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS internal 43581 43703 0.77 - 1 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS initial 43757 43782 0.99 - 0 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS intron 34713 35685 0.69 - . transcript_id "g3.t1"; gene_id "g3"; >--- 112,116 ---- >! chrI AUGUSTUS internal 41367 42555 0.54 - 2 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS internal 42604 42740 0.54 - 1 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS internal 43581 43703 0.74 - 1 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS initial 43757 43782 1 - 0 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS intron 34713 35685 0.75 - . transcript_id "g3.t1"; gene_id "g3"; >*************** >*** 119,123 **** >! chrI AUGUSTUS intron 42556 42603 0.49 - . transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS intron 42741 43580 0.77 - . transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS intron 43704 43756 0.78 - . transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 34533 34712 0.69 - 0 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 35686 36011 1 - 2 transcript_id "g3.t1"; gene_id "g3"; >--- 119,123 ---- >! chrI AUGUSTUS intron 42556 42603 0.54 - . transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS intron 42741 43580 0.74 - . transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS intron 43704 43756 0.77 - . transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 34533 34712 0.76 - 0 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 35686 36011 0.99 - 2 transcript_id "g3.t1"; gene_id "g3"; >*************** >*** 125,128 **** >! chrI AUGUSTUS CDS 41367 42555 0.49 - 2 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 42604 42740 0.49 - 1 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 43581 43703 0.77 - 1 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 43757 43782 0.99 - 0 transcript_id "g3.t1"; gene_id "g3"; >--- 125,128 ---- >! chrI AUGUSTUS CDS 41367 42555 0.54 - 2 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 42604 42740 0.54 - 1 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 43581 43703 0.74 - 1 transcript_id "g3.t1"; gene_id "g3"; >! chrI AUGUSTUS CDS 43757 43782 1 - 0 transcript_id "g3.t1"; gene_id "g3"; >*************** >*** 130 **** >! chrI AUGUSTUS 5'-UTR 43783 43825 0.31 - . transcript_id "g3.t1"; gene_id "g3"; >--- 130 ---- >! chrI AUGUSTUS 5'-UTR 43783 43825 0.41 - . transcript_id "g3.t1"; gene_id "g3"; >*************** >*** 152,153 **** >! chrI AUGUSTUS gene 46117 50255 0.14 - . g4 >! chrI AUGUSTUS transcript 46117 50255 0.14 - . g4.t1 >--- 152,153 ---- >! chrI AUGUSTUS gene 46117 50255 0.18 - . g4 >! chrI AUGUSTUS transcript 46117 50255 0.18 - . g4.t1 >*************** >*** 155,156 **** >! chrI AUGUSTUS 3'-UTR 46117 46144 0.46 - . transcript_id "g4.t1"; gene_id "g4"; >! chrI AUGUSTUS 3'-UTR 46522 46852 0.53 - . transcript_id "g4.t1"; gene_id "g4"; >--- 155,156 ---- >! chrI AUGUSTUS 3'-UTR 46117 46144 0.42 - . transcript_id "g4.t1"; gene_id "g4"; >! chrI AUGUSTUS 3'-UTR 46522 46852 0.58 - . transcript_id "g4.t1"; gene_id "g4"; >*************** >*** 159,160 **** >! chrI AUGUSTUS single 49142 50179 1 - 0 transcript_id "g4.t1"; gene_id "g4"; >! chrI AUGUSTUS CDS 49142 50179 1 - 0 transcript_id "g4.t1"; gene_id "g4"; >--- 159,160 ---- >! chrI AUGUSTUS single 49142 50179 0.98 - 0 transcript_id "g4.t1"; gene_id "g4"; >! chrI AUGUSTUS CDS 49142 50179 0.98 - 0 transcript_id "g4.t1"; gene_id "g4"; >*************** >*** 162 **** >! chrI AUGUSTUS 5'-UTR 50180 50255 0.51 - . transcript_id "g4.t1"; gene_id "g4"; >--- 162 ---- >! chrI AUGUSTUS 5'-UTR 50180 50255 0.44 - . transcript_id "g4.t1"; gene_id "g4"; >*************** >*** 180,181 **** >! chrI AUGUSTUS gene 50909 59305 0.03 - . g5 >! chrI AUGUSTUS transcript 50909 59305 0.03 - . g5.t1 >--- 180,181 ---- >! chrI AUGUSTUS gene 50909 59305 0.02 - . g5 >! chrI AUGUSTUS transcript 50909 59305 0.02 - . g5.t1 >*************** >*** 183 **** >! chrI AUGUSTUS 3'-UTR 50909 50998 0.55 - . transcript_id "g5.t1"; gene_id "g5"; >--- 183 ---- >! chrI AUGUSTUS 3'-UTR 50909 50998 0.52 - . transcript_id "g5.t1"; gene_id "g5"; >*************** >*** 185,186 **** >! chrI AUGUSTUS terminal 50999 51019 0.9 - 0 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS internal 51067 52824 0.67 - 0 transcript_id "g5.t1"; gene_id "g5"; >--- 185,186 ---- >! chrI AUGUSTUS terminal 50999 51019 0.91 - 0 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS internal 51067 52824 0.68 - 0 transcript_id "g5.t1"; gene_id "g5"; >*************** >*** 188,192 **** >! chrI AUGUSTUS internal 53413 53703 0.98 - 0 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS internal 55231 56156 0.82 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS internal 56598 56774 0.28 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS internal 57330 58417 0.73 - 1 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS initial 58461 59230 0.91 - 0 transcript_id "g5.t1"; gene_id "g5"; >--- 188,192 ---- >! chrI AUGUSTUS internal 53413 53703 1 - 0 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS internal 55231 56156 0.69 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS internal 56598 56774 0.27 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS internal 57330 58417 0.71 - 1 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS initial 58461 59230 0.9 - 0 transcript_id "g5.t1"; gene_id "g5"; >*************** >*** 194 **** >! chrI AUGUSTUS intron 52825 53116 0.64 - . transcript_id "g5.t1"; gene_id "g5"; >--- 194 ---- >! chrI AUGUSTUS intron 52825 53116 0.67 - . transcript_id "g5.t1"; gene_id "g5"; >*************** >*** 196,197 **** >! chrI AUGUSTUS intron 53704 55230 0.91 - . transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS intron 56157 56597 0.87 - . transcript_id "g5.t1"; gene_id "g5"; >--- 196,197 ---- >! chrI AUGUSTUS intron 53704 55230 0.84 - . transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS intron 56157 56597 0.72 - . transcript_id "g5.t1"; gene_id "g5"; >*************** >*** 199,201 **** >! chrI AUGUSTUS intron 58418 58460 0.97 - . transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 50999 51019 0.9 - 0 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 51067 52824 0.67 - 0 transcript_id "g5.t1"; gene_id "g5"; >--- 199,201 ---- >! chrI AUGUSTUS intron 58418 58460 0.98 - . transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 50999 51019 0.91 - 0 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 51067 52824 0.68 - 0 transcript_id "g5.t1"; gene_id "g5"; >*************** >*** 203,207 **** >! chrI AUGUSTUS CDS 53413 53703 0.98 - 0 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 55231 56156 0.82 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 56598 56774 0.28 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 57330 58417 0.73 - 1 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 58461 59230 0.91 - 0 transcript_id "g5.t1"; gene_id "g5"; >--- 203,207 ---- >! chrI AUGUSTUS CDS 53413 53703 1 - 0 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 55231 56156 0.69 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 56598 56774 0.27 - 2 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 57330 58417 0.71 - 1 transcript_id "g5.t1"; gene_id "g5"; >! chrI AUGUSTUS CDS 58461 59230 0.9 - 0 transcript_id "g5.t1"; gene_id "g5"; >*************** >*** 209 **** >! chrI AUGUSTUS 5'-UTR 59231 59305 0.25 - . transcript_id "g5.t1"; gene_id "g5"; >--- 209 ---- >! chrI AUGUSTUS 5'-UTR 59231 59305 0.37 - . transcript_id "g5.t1"; gene_id "g5"; >*************** >*** 243,244 **** >! chrI AUGUSTUS gene 59438 60095 0.14 - . g6 >! chrI AUGUSTUS transcript 59438 60095 0.14 - . g6.t1 >--- 243,244 ---- >! chrI AUGUSTUS gene 59438 60095 0.17 - . g6 >! chrI AUGUSTUS transcript 59438 60095 0.17 - . g6.t1 >*************** >*** 246 **** >! chrI AUGUSTUS 3'-UTR 59438 59458 0.84 - . transcript_id "g6.t1"; gene_id "g6"; >--- 246 ---- >! chrI AUGUSTUS 3'-UTR 59438 59458 0.77 - . transcript_id "g6.t1"; gene_id "g6"; >*************** >*** 248,249 **** >! chrI AUGUSTUS single 59459 60046 0.7 - 0 transcript_id "g6.t1"; gene_id "g6"; >! chrI AUGUSTUS CDS 59459 60046 0.7 - 0 transcript_id "g6.t1"; gene_id "g6"; >--- 248,249 ---- >! chrI AUGUSTUS single 59459 60046 0.71 - 0 transcript_id "g6.t1"; gene_id "g6"; >! chrI AUGUSTUS CDS 59459 60046 0.71 - 0 transcript_id "g6.t1"; gene_id "g6"; >*************** >*** 251 **** >! chrI AUGUSTUS 5'-UTR 60047 60095 0.24 - . transcript_id "g6.t1"; gene_id "g6"; >--- 251 ---- >! chrI AUGUSTUS 5'-UTR 60047 60095 0.22 - . transcript_id "g6.t1"; gene_id "g6"; >*************** >*** 267,268 **** >! chrI AUGUSTUS gene 60196 60805 0.07 + . g7 >! chrI AUGUSTUS transcript 60196 60805 0.07 + . g7.t1 >--- 267,268 ---- >! chrI AUGUSTUS gene 60196 60805 0.05 + . g7 >! chrI AUGUSTUS transcript 60196 60805 0.05 + . g7.t1 >*************** >*** 270 **** >! chrI AUGUSTUS 5'-UTR 60196 60221 0.34 + . transcript_id "g7.t1"; gene_id "g7"; >--- 270 ---- >! chrI AUGUSTUS 5'-UTR 60196 60221 0.41 + . transcript_id "g7.t1"; gene_id "g7"; >*************** >*** 275 **** >! chrI AUGUSTUS 3'-UTR 60687 60805 0.19 + . transcript_id "g7.t1"; gene_id "g7"; >--- 275 ---- >! chrI AUGUSTUS 3'-UTR 60687 60805 0.15 + . transcript_id "g7.t1"; gene_id "g7"; >*************** >*** 290,291 **** >! chrI AUGUSTUS gene 61530 63965 0.07 - . g8 >! chrI AUGUSTUS transcript 61530 63965 0.07 - . g8.t1 >--- 290,291 ---- >! chrI AUGUSTUS gene 61530 63965 0.05 - . g8 >! chrI AUGUSTUS transcript 61530 63965 0.05 - . g8.t1 >*************** >*** 293 **** >! chrI AUGUSTUS 3'-UTR 61530 61737 0.42 - . transcript_id "g8.t1"; gene_id "g8"; >--- 293 ---- >! chrI AUGUSTUS 3'-UTR 61530 61737 0.35 - . transcript_id "g8.t1"; gene_id "g8"; >*************** >*** 297 **** >! chrI AUGUSTUS internal 62796 63272 1 - 1 transcript_id "g8.t1"; gene_id "g8"; >--- 297 ---- >! chrI AUGUSTUS internal 62796 63272 0.98 - 1 transcript_id "g8.t1"; gene_id "g8"; >*************** >*** 301 **** >! chrI AUGUSTUS initial 63825 63905 0.5 - 0 transcript_id "g8.t1"; gene_id "g8"; >--- 301 ---- >! chrI AUGUSTUS initial 63825 63905 0.37 - 0 transcript_id "g8.t1"; gene_id "g8"; >*************** >*** 303 **** >! chrI AUGUSTUS intron 62066 62795 1 - . transcript_id "g8.t1"; gene_id "g8"; >--- 303 ---- >! chrI AUGUSTUS intron 62066 62795 0.98 - . transcript_id "g8.t1"; gene_id "g8"; >*************** >*** 310 **** >! chrI AUGUSTUS CDS 62796 63272 1 - 1 transcript_id "g8.t1"; gene_id "g8"; >--- 310 ---- >! chrI AUGUSTUS CDS 62796 63272 0.98 - 1 transcript_id "g8.t1"; gene_id "g8"; >*************** >*** 314 **** >! chrI AUGUSTUS CDS 63825 63905 0.5 - 0 transcript_id "g8.t1"; gene_id "g8"; >--- 314 ---- >! chrI AUGUSTUS CDS 63825 63905 0.37 - 0 transcript_id "g8.t1"; gene_id "g8"; >*************** >*** 335,336 **** >! chrI AUGUSTUS gene 64206 64920 0.13 + . g9 >! chrI AUGUSTUS transcript 64206 64920 0.13 + . g9.t1 >--- 335,336 ---- >! chrI AUGUSTUS gene 64206 64920 0.11 + . g9 >! chrI AUGUSTUS transcript 64206 64920 0.11 + . g9.t1 >*************** >*** 338 **** >! chrI AUGUSTUS 5'-UTR 64206 64306 0.38 + . transcript_id "g9.t1"; gene_id "g9"; >--- 338 ---- >! chrI AUGUSTUS 5'-UTR 64206 64306 0.4 + . transcript_id "g9.t1"; gene_id "g9"; >*************** >*** 340 **** >! chrI AUGUSTUS initial 64307 64400 1 + 0 transcript_id "g9.t1"; gene_id "g9"; >--- 340 ---- >! chrI AUGUSTUS initial 64307 64400 0.93 + 0 transcript_id "g9.t1"; gene_id "g9"; >*************** >*** 342,343 **** >! chrI AUGUSTUS intron 64401 64451 1 + . transcript_id "g9.t1"; gene_id "g9"; >! chrI AUGUSTUS CDS 64307 64400 1 + 0 transcript_id "g9.t1"; gene_id "g9"; >--- 342,343 ---- >! chrI AUGUSTUS intron 64401 64451 0.93 + . transcript_id "g9.t1"; gene_id "g9"; >! chrI AUGUSTUS CDS 64307 64400 0.93 + 0 transcript_id "g9.t1"; gene_id "g9"; >*************** >*** 346 **** >! chrI AUGUSTUS 3'-UTR 64562 64920 0.3 + . transcript_id "g9.t1"; gene_id "g9"; >--- 346 ---- >! chrI AUGUSTUS 3'-UTR 64562 64920 0.29 + . transcript_id "g9.t1"; gene_id "g9"; >*************** >*** 360,361 **** >! chrI AUGUSTUS gene 64976 65454 0.17 + . g10 >! chrI AUGUSTUS transcript 64976 65454 0.17 + . g10.t1 >--- 360,361 ---- >! chrI AUGUSTUS gene 64976 65454 0.1 + . g10 >! chrI AUGUSTUS transcript 64976 65454 0.1 + . g10.t1 >*************** >*** 363 **** >! chrI AUGUSTUS 5'-UTR 64976 65069 0.45 + . transcript_id "g10.t1"; gene_id "g10"; >--- 363 ---- >! chrI AUGUSTUS 5'-UTR 64976 65069 0.42 + . transcript_id "g10.t1"; gene_id "g10"; >*************** >*** 366 **** >! chrI AUGUSTUS terminal 65235 65381 0.85 + 0 transcript_id "g10.t1"; gene_id "g10"; >--- 366 ---- >! chrI AUGUSTUS terminal 65235 65381 0.84 + 0 transcript_id "g10.t1"; gene_id "g10"; >*************** >*** 369 **** >! chrI AUGUSTUS CDS 65235 65381 0.85 + 0 transcript_id "g10.t1"; gene_id "g10"; >--- 369 ---- >! chrI AUGUSTUS CDS 65235 65381 0.84 + 0 transcript_id "g10.t1"; gene_id "g10"; >*************** >*** 371 **** >! chrI AUGUSTUS 3'-UTR 65382 65454 0.37 + . transcript_id "g10.t1"; gene_id "g10"; >--- 371 ---- >! chrI AUGUSTUS 3'-UTR 65382 65454 0.29 + . transcript_id "g10.t1"; gene_id "g10"; >*************** >*** 386,387 **** >! chrI AUGUSTUS gene 65726 69080 0.12 + . g11 >! chrI AUGUSTUS transcript 65726 69080 0.12 + . g11.t1 >--- 386,387 ---- >! chrI AUGUSTUS gene 65726 69080 0.06 + . g11 >! chrI AUGUSTUS transcript 65726 69080 0.06 + . g11.t1 >*************** >*** 389 **** >! chrI AUGUSTUS 5'-UTR 65726 65750 0.48 + . transcript_id "g11.t1"; gene_id "g11"; >--- 389 ---- >! chrI AUGUSTUS 5'-UTR 65726 65750 0.4 + . transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 391,393 **** >! chrI AUGUSTUS initial 65751 65818 0.62 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS internal 66706 66776 0.92 + 1 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS internal 66837 66973 0.91 + 2 transcript_id "g11.t1"; gene_id "g11"; >--- 391,393 ---- >! chrI AUGUSTUS initial 65751 65818 0.55 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS internal 66706 66776 0.97 + 1 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS internal 66837 66973 0.96 + 2 transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 395,396 **** >! chrI AUGUSTUS internal 68040 68147 0.89 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS internal 68247 68312 0.51 + 0 transcript_id "g11.t1"; gene_id "g11"; >--- 395,396 ---- >! chrI AUGUSTUS internal 68040 68147 0.83 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS internal 68247 68312 0.5 + 0 transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 398,401 **** >! chrI AUGUSTUS internal 68507 68829 0.96 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS terminal 68880 69051 0.81 + 1 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS intron 65819 66705 0.62 + . transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS intron 66777 66836 0.92 + . transcript_id "g11.t1"; gene_id "g11"; >--- 398,401 ---- >! chrI AUGUSTUS internal 68507 68829 0.93 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS terminal 68880 69051 0.84 + 1 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS intron 65819 66705 0.55 + . transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS intron 66777 66836 0.97 + . transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 403,404 **** >! chrI AUGUSTUS intron 67241 68039 0.89 + . transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS intron 68148 68246 0.45 + . transcript_id "g11.t1"; gene_id "g11"; >--- 403,404 ---- >! chrI AUGUSTUS intron 67241 68039 0.83 + . transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS intron 68148 68246 0.4 + . transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 407,410 **** >! chrI AUGUSTUS intron 68830 68879 0.81 + . transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 65751 65818 0.62 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 66706 66776 0.92 + 1 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 66837 66973 0.91 + 2 transcript_id "g11.t1"; gene_id "g11"; >--- 407,410 ---- >! chrI AUGUSTUS intron 68830 68879 0.84 + . transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 65751 65818 0.55 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 66706 66776 0.97 + 1 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 66837 66973 0.96 + 2 transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 412,413 **** >! chrI AUGUSTUS CDS 68040 68147 0.89 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 68247 68312 0.51 + 0 transcript_id "g11.t1"; gene_id "g11"; >--- 412,413 ---- >! chrI AUGUSTUS CDS 68040 68147 0.83 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 68247 68312 0.5 + 0 transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 415,416 **** >! chrI AUGUSTUS CDS 68507 68829 0.96 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 68880 69051 0.81 + 1 transcript_id "g11.t1"; gene_id "g11"; >--- 415,416 ---- >! chrI AUGUSTUS CDS 68507 68829 0.93 + 0 transcript_id "g11.t1"; gene_id "g11"; >! chrI AUGUSTUS CDS 68880 69051 0.84 + 1 transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 418 **** >! chrI AUGUSTUS 3'-UTR 69052 69080 0.64 + . transcript_id "g11.t1"; gene_id "g11"; >--- 418 ---- >! chrI AUGUSTUS 3'-UTR 69052 69080 0.6 + . transcript_id "g11.t1"; gene_id "g11"; >*************** >*** 436,437 **** >! chrI AUGUSTUS gene 69091 69615 0.14 - . g12 >! chrI AUGUSTUS transcript 69091 69615 0.14 - . g12.t1 >--- 436,437 ---- >! chrI AUGUSTUS gene 69091 69615 0.21 - . g12 >! chrI AUGUSTUS transcript 69091 69615 0.21 - . g12.t1 >*************** >*** 439 **** >! chrI AUGUSTUS 3'-UTR 69091 69130 0.69 - . transcript_id "g12.t1"; gene_id "g12"; >--- 439 ---- >! chrI AUGUSTUS 3'-UTR 69091 69130 0.63 - . transcript_id "g12.t1"; gene_id "g12"; >*************** >*** 442,443 **** >! chrI AUGUSTUS initial 69345 69515 1 - 0 transcript_id "g12.t1"; gene_id "g12"; >! chrI AUGUSTUS intron 69296 69344 1 - . transcript_id "g12.t1"; gene_id "g12"; >--- 442,443 ---- >! chrI AUGUSTUS initial 69345 69515 0.99 - 0 transcript_id "g12.t1"; gene_id "g12"; >! chrI AUGUSTUS intron 69296 69344 0.99 - . transcript_id "g12.t1"; gene_id "g12"; >*************** >*** 445 **** >! chrI AUGUSTUS CDS 69345 69515 1 - 0 transcript_id "g12.t1"; gene_id "g12"; >--- 445 ---- >! chrI AUGUSTUS CDS 69345 69515 0.99 - 0 transcript_id "g12.t1"; gene_id "g12"; >*************** >*** 447 **** >! chrI AUGUSTUS 5'-UTR 69516 69615 0.19 - . transcript_id "g12.t1"; gene_id "g12"; >--- 447 ---- >! chrI AUGUSTUS 5'-UTR 69516 69615 0.29 - . transcript_id "g12.t1"; gene_id "g12"; >*************** >*** 462,463 **** >! chrI AUGUSTUS gene 69685 70725 0.2 - . g13 >! chrI AUGUSTUS transcript 69685 70725 0.2 - . g13.t1 >--- 462,463 ---- >! chrI AUGUSTUS gene 69685 70725 0.32 - . g13 >! chrI AUGUSTUS transcript 69685 70725 0.32 - . g13.t1 >*************** >*** 465 **** >! chrI AUGUSTUS 3'-UTR 69685 69722 0.74 - . transcript_id "g13.t1"; gene_id "g13"; >--- 465 ---- >! chrI AUGUSTUS 3'-UTR 69685 69722 0.85 - . transcript_id "g13.t1"; gene_id "g13"; >*************** >*** 468,471 **** >! chrI AUGUSTUS internal 70054 70209 0.93 - 0 transcript_id "g13.t1"; gene_id "g13"; >! chrI AUGUSTUS initial 70442 70606 0.97 - 0 transcript_id "g13.t1"; gene_id "g13"; >! chrI AUGUSTUS intron 69840 70053 0.93 - . transcript_id "g13.t1"; gene_id "g13"; >! chrI AUGUSTUS intron 70210 70441 0.97 - . transcript_id "g13.t1"; gene_id "g13"; >--- 468,471 ---- >! chrI AUGUSTUS internal 70054 70209 0.89 - 0 transcript_id "g13.t1"; gene_id "g13"; >! chrI AUGUSTUS initial 70442 70606 0.93 - 0 transcript_id "g13.t1"; gene_id "g13"; >! chrI AUGUSTUS intron 69840 70053 0.89 - . transcript_id "g13.t1"; gene_id "g13"; >! chrI AUGUSTUS intron 70210 70441 0.93 - . transcript_id "g13.t1"; gene_id "g13"; >*************** >*** 473,474 **** >! chrI AUGUSTUS CDS 70054 70209 0.93 - 0 transcript_id "g13.t1"; gene_id "g13"; >! chrI AUGUSTUS CDS 70442 70606 0.97 - 0 transcript_id "g13.t1"; gene_id "g13"; >--- 473,474 ---- >! chrI AUGUSTUS CDS 70054 70209 0.89 - 0 transcript_id "g13.t1"; gene_id "g13"; >! chrI AUGUSTUS CDS 70442 70606 0.93 - 0 transcript_id "g13.t1"; gene_id "g13"; >*************** >*** 476 **** >! chrI AUGUSTUS 5'-UTR 70607 70725 0.26 - . transcript_id "g13.t1"; gene_id "g13"; >--- 476 ---- >! chrI AUGUSTUS 5'-UTR 70607 70725 0.35 - . transcript_id "g13.t1"; gene_id "g13"; >*************** >*** 491,492 **** >! chrI AUGUSTUS gene 71286 72550 0.33 + . g14 >! chrI AUGUSTUS transcript 71286 72550 0.33 + . g14.t1 >--- 491,492 ---- >! chrI AUGUSTUS gene 71286 72550 0.35 + . g14 >! chrI AUGUSTUS transcript 71286 72550 0.35 + . g14.t1 >*************** >*** 494 **** >! chrI AUGUSTUS 5'-UTR 71286 71354 0.45 + . transcript_id "g14.t1"; gene_id "g14"; >--- 494 ---- >! chrI AUGUSTUS 5'-UTR 71286 71354 0.49 + . transcript_id "g14.t1"; gene_id "g14"; >*************** >*** 505 **** >! chrI AUGUSTUS 3'-UTR 72301 72550 0.74 + . transcript_id "g14.t1"; gene_id "g14"; >--- 505 ---- >! chrI AUGUSTUS 3'-UTR 72301 72550 0.71 + . transcript_id "g14.t1"; gene_id "g14"; >*************** >*** 526 **** >! chrI AUGUSTUS 5'-UTR 72656 72681 0.57 + . transcript_id "g15.t1"; gene_id "g15"; >--- 526 ---- >! chrI AUGUSTUS 5'-UTR 72656 72681 0.59 + . transcript_id "g15.t1"; gene_id "g15"; >*************** >*** 528 **** >! chrI AUGUSTUS initial 72682 72808 0.84 + 0 transcript_id "g15.t1"; gene_id "g15"; >--- 528 ---- >! chrI AUGUSTUS initial 72682 72808 0.85 + 0 transcript_id "g15.t1"; gene_id "g15"; >*************** >*** 532 **** >! chrI AUGUSTUS intron 72809 73420 1 + . transcript_id "g15.t1"; gene_id "g15"; >--- 532 ---- >! chrI AUGUSTUS intron 72809 73420 0.99 + . transcript_id "g15.t1"; gene_id "g15"; >*************** >*** 535 **** >! chrI AUGUSTUS CDS 72682 72808 0.84 + 0 transcript_id "g15.t1"; gene_id "g15"; >--- 535 ---- >! chrI AUGUSTUS CDS 72682 72808 0.85 + 0 transcript_id "g15.t1"; gene_id "g15"; >*************** >*** 540 **** >! chrI AUGUSTUS 3'-UTR 76103 76290 0.3 + . transcript_id "g15.t1"; gene_id "g15"; >--- 540 ---- >! chrI AUGUSTUS 3'-UTR 76103 76290 0.24 + . transcript_id "g15.t1"; gene_id "g15"; >*************** >*** 559,560 **** >! chrI AUGUSTUS gene 76886 85550 0.05 + . g16 >! chrI AUGUSTUS transcript 76886 85550 0.05 + . g16.t1 >--- 559,560 ---- >! chrI AUGUSTUS gene 76886 85550 0.03 + . g16 >! chrI AUGUSTUS transcript 76886 85550 0.03 + . g16.t1 >*************** >*** 562,563 **** >! chrI AUGUSTUS 5'-UTR 76886 76916 0.12 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS 5'-UTR 78963 78988 0.68 + . transcript_id "g16.t1"; gene_id "g16"; >--- 562,563 ---- >! chrI AUGUSTUS 5'-UTR 76886 76916 0.08 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS 5'-UTR 78963 78988 0.61 + . transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 565,567 **** >! chrI AUGUSTUS initial 78989 79056 0.36 + 0 transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS internal 79266 79359 0.76 + 1 transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS internal 80746 80902 0.74 + 0 transcript_id "g16.t1"; gene_id "g16"; >--- 565,567 ---- >! chrI AUGUSTUS initial 78989 79056 0.33 + 0 transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS internal 79266 79359 0.7 + 1 transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS internal 80746 80902 0.69 + 0 transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 569 **** >! chrI AUGUSTUS internal 82816 83031 0.97 + 0 transcript_id "g16.t1"; gene_id "g16"; >--- 569 ---- >! chrI AUGUSTUS internal 82816 83031 0.98 + 0 transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 571 **** >! chrI AUGUSTUS internal 84481 84552 0.93 + 0 transcript_id "g16.t1"; gene_id "g16"; >--- 571 ---- >! chrI AUGUSTUS internal 84481 84552 0.91 + 0 transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 573,574 **** >! chrI AUGUSTUS intron 79057 79265 0.36 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS intron 79360 80745 0.76 + . transcript_id "g16.t1"; gene_id "g16"; >--- 573,574 ---- >! chrI AUGUSTUS intron 79057 79265 0.33 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS intron 79360 80745 0.7 + . transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 576,582 **** >! chrI AUGUSTUS intron 81312 82815 0.77 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS intron 83032 84340 0.97 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS intron 84419 84480 0.99 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS intron 84553 85252 0.93 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS CDS 78989 79056 0.36 + 0 transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS CDS 79266 79359 0.76 + 1 transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS CDS 80746 80902 0.74 + 0 transcript_id "g16.t1"; gene_id "g16"; >--- 576,582 ---- >! chrI AUGUSTUS intron 81312 82815 0.74 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS intron 83032 84340 0.98 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS intron 84419 84480 1 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS intron 84553 85252 0.91 + . transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS CDS 78989 79056 0.33 + 0 transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS CDS 79266 79359 0.7 + 1 transcript_id "g16.t1"; gene_id "g16"; >! chrI AUGUSTUS CDS 80746 80902 0.69 + 0 transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 584 **** >! chrI AUGUSTUS CDS 82816 83031 0.97 + 0 transcript_id "g16.t1"; gene_id "g16"; >--- 584 ---- >! chrI AUGUSTUS CDS 82816 83031 0.98 + 0 transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 586 **** >! chrI AUGUSTUS CDS 84481 84552 0.93 + 0 transcript_id "g16.t1"; gene_id "g16"; >--- 586 ---- >! chrI AUGUSTUS CDS 84481 84552 0.91 + 0 transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 589 **** >! chrI AUGUSTUS 3'-UTR 85493 85550 0.74 + . transcript_id "g16.t1"; gene_id "g16"; >--- 589 ---- >! chrI AUGUSTUS 3'-UTR 85493 85550 0.69 + . transcript_id "g16.t1"; gene_id "g16"; >*************** >*** 612 **** >! chrI AUGUSTUS 3'-UTR 85608 85674 0.53 - . transcript_id "g17.t1"; gene_id "g17"; >--- 612 ---- >! chrI AUGUSTUS 3'-UTR 85608 85674 0.55 - . transcript_id "g17.t1"; gene_id "g17"; >*************** >*** 614,616 **** >! chrI AUGUSTUS terminal 85675 85817 0.58 - 2 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS internal 86938 87409 0.51 - 0 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS internal 87742 87885 1 - 0 transcript_id "g17.t1"; gene_id "g17"; >--- 614,616 ---- >! chrI AUGUSTUS terminal 85675 85817 0.62 - 2 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS internal 86938 87409 0.48 - 0 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS internal 87742 87885 0.98 - 0 transcript_id "g17.t1"; gene_id "g17"; >*************** >*** 621,624 **** >! chrI AUGUSTUS initial 93697 93798 0.81 - 0 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS intron 85818 86937 0.58 - . transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS intron 87410 87741 0.86 - . transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS intron 87886 88145 1 - . transcript_id "g17.t1"; gene_id "g17"; >--- 621,624 ---- >! chrI AUGUSTUS initial 93697 93798 0.71 - 0 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS intron 85818 86937 0.62 - . transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS intron 87410 87741 0.74 - . transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS intron 87886 88145 0.98 - . transcript_id "g17.t1"; gene_id "g17"; >*************** >*** 627,631 **** >! chrI AUGUSTUS intron 90594 92212 1 - . transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS intron 92503 93696 0.81 - . transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS CDS 85675 85817 0.58 - 2 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS CDS 86938 87409 0.51 - 0 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS CDS 87742 87885 1 - 0 transcript_id "g17.t1"; gene_id "g17"; >--- 627,631 ---- >! chrI AUGUSTUS intron 90594 92212 0.99 - . transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS intron 92503 93696 0.73 - . transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS CDS 85675 85817 0.62 - 2 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS CDS 86938 87409 0.48 - 0 transcript_id "g17.t1"; gene_id "g17"; >! chrI AUGUSTUS CDS 87742 87885 0.98 - 0 transcript_id "g17.t1"; gene_id "g17"; >*************** >*** 636 **** >! chrI AUGUSTUS CDS 93697 93798 0.81 - 0 transcript_id "g17.t1"; gene_id "g17"; >--- 636 ---- >! chrI AUGUSTUS CDS 93697 93798 0.71 - 0 transcript_id "g17.t1"; gene_id "g17"; >*************** >*** 638 **** >! chrI AUGUSTUS 5'-UTR 93799 93865 0.36 - . transcript_id "g17.t1"; gene_id "g17"; >--- 638 ---- >! chrI AUGUSTUS 5'-UTR 93799 93865 0.38 - . transcript_id "g17.t1"; gene_id "g17"; >*************** >*** 658,659 **** >! chrI AUGUSTUS gene 97316 105470 0.32 + . g18 >! chrI AUGUSTUS transcript 97316 105470 0.32 + . g18.t1 >--- 658,659 ---- >! chrI AUGUSTUS gene 97316 105470 0.3 + . g18 >! chrI AUGUSTUS transcript 97316 105470 0.3 + . g18.t1 >*************** >*** 661 **** >! chrI AUGUSTUS 5'-UTR 97316 97348 0.47 + . transcript_id "g18.t1"; gene_id "g18"; >--- 661 ---- >! chrI AUGUSTUS 5'-UTR 97316 97348 0.43 + . transcript_id "g18.t1"; gene_id "g18"; >*************** >*** 663 **** >! chrI AUGUSTUS initial 97349 97447 1 + 0 transcript_id "g18.t1"; gene_id "g18"; >--- 663 ---- >! chrI AUGUSTUS initial 97349 97447 0.98 + 0 transcript_id "g18.t1"; gene_id "g18"; >*************** >*** 666,668 **** >! chrI AUGUSTUS internal 100626 101006 0.97 + 0 transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS internal 102145 102568 0.85 + 0 transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS internal 103200 103291 0.96 + 2 transcript_id "g18.t1"; gene_id "g18"; >--- 666,668 ---- >! chrI AUGUSTUS internal 100626 101006 0.95 + 0 transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS internal 102145 102568 0.89 + 0 transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS internal 103200 103291 0.97 + 2 transcript_id "g18.t1"; gene_id "g18"; >*************** >*** 670 **** >! chrI AUGUSTUS terminal 105186 105448 0.91 + 2 transcript_id "g18.t1"; gene_id "g18"; >--- 670 ---- >! chrI AUGUSTUS terminal 105186 105448 0.9 + 2 transcript_id "g18.t1"; gene_id "g18"; >*************** >*** 674,676 **** >! chrI AUGUSTUS intron 101007 102144 0.98 + . transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS intron 102569 103199 0.85 + . transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS intron 103292 103939 0.96 + . transcript_id "g18.t1"; gene_id "g18"; >--- 674,676 ---- >! chrI AUGUSTUS intron 101007 102144 0.95 + . transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS intron 102569 103199 0.89 + . transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS intron 103292 103939 0.97 + . transcript_id "g18.t1"; gene_id "g18"; >*************** >*** 678 **** >! chrI AUGUSTUS CDS 97349 97447 1 + 0 transcript_id "g18.t1"; gene_id "g18"; >--- 678 ---- >! chrI AUGUSTUS CDS 97349 97447 0.98 + 0 transcript_id "g18.t1"; gene_id "g18"; >*************** >*** 681,683 **** >! chrI AUGUSTUS CDS 100626 101006 0.97 + 0 transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS CDS 102145 102568 0.85 + 0 transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS CDS 103200 103291 0.96 + 2 transcript_id "g18.t1"; gene_id "g18"; >--- 681,683 ---- >! chrI AUGUSTUS CDS 100626 101006 0.95 + 0 transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS CDS 102145 102568 0.89 + 0 transcript_id "g18.t1"; gene_id "g18"; >! chrI AUGUSTUS CDS 103200 103291 0.97 + 2 transcript_id "g18.t1"; gene_id "g18"; >*************** >*** 685 **** >! chrI AUGUSTUS CDS 105186 105448 0.91 + 2 transcript_id "g18.t1"; gene_id "g18"; >--- 685 ---- >! chrI AUGUSTUS CDS 105186 105448 0.9 + 2 transcript_id "g18.t1"; gene_id "g18"; >*************** >*** 708,709 **** >! chrI AUGUSTUS gene 107407 108865 0.5 - . g19 >! chrI AUGUSTUS transcript 107407 108865 0.5 - . g19.t1 >--- 708,709 ---- >! chrI AUGUSTUS gene 107407 108865 0.46 - . g19 >! chrI AUGUSTUS transcript 107407 108865 0.46 - . g19.t1 >*************** >*** 711 **** >! chrI AUGUSTUS 3'-UTR 107407 107458 1 - . transcript_id "g19.t1"; gene_id "g19"; >--- 711 ---- >! chrI AUGUSTUS 3'-UTR 107407 107458 0.99 - . transcript_id "g19.t1"; gene_id "g19"; >*************** >*** 715 **** >! chrI AUGUSTUS initial 108776 108830 0.9 - 0 transcript_id "g19.t1"; gene_id "g19"; >--- 715 ---- >! chrI AUGUSTUS initial 108776 108830 0.91 - 0 transcript_id "g19.t1"; gene_id "g19"; >*************** >*** 717 **** >! chrI AUGUSTUS intron 108640 108775 0.9 - . transcript_id "g19.t1"; gene_id "g19"; >--- 717 ---- >! chrI AUGUSTUS intron 108640 108775 0.91 - . transcript_id "g19.t1"; gene_id "g19"; >*************** >*** 720 **** >! chrI AUGUSTUS CDS 108776 108830 0.9 - 0 transcript_id "g19.t1"; gene_id "g19"; >--- 720 ---- >! chrI AUGUSTUS CDS 108776 108830 0.91 - 0 transcript_id "g19.t1"; gene_id "g19"; >*************** >*** 722 **** >! chrI AUGUSTUS 5'-UTR 108831 108865 0.52 - . transcript_id "g19.t1"; gene_id "g19"; >--- 722 ---- >! chrI AUGUSTUS 5'-UTR 108831 108865 0.46 - . transcript_id "g19.t1"; gene_id "g19"; >*************** >*** 739,740 **** >! chrI AUGUSTUS gene 109176 113257 0.33 + . g20 >! chrI AUGUSTUS transcript 109176 113257 0.33 + . g20.t1 >--- 739,740 ---- >! chrI AUGUSTUS gene 109176 113257 0.48 + . g20 >! chrI AUGUSTUS transcript 109176 113257 0.48 + . g20.t1 >*************** >*** 742 **** >! chrI AUGUSTUS 5'-UTR 109176 109203 0.6 + . transcript_id "g20.t1"; gene_id "g20"; >--- 742 ---- >! chrI AUGUSTUS 5'-UTR 109176 109203 0.69 + . transcript_id "g20.t1"; gene_id "g20"; >*************** >*** 744,754 **** >! chrI AUGUSTUS initial 109204 109232 0.99 + 0 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS internal 110134 110451 0.99 + 1 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS internal 111387 111618 0.72 + 1 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS terminal 113229 113231 0.61 + 0 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS intron 109233 110133 0.99 + . transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS intron 110452 111386 0.99 + . transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS intron 111619 113228 0.61 + . transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS CDS 109204 109232 0.99 + 0 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS CDS 110134 110451 0.99 + 1 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS CDS 111387 111618 0.72 + 1 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS CDS 113229 113231 0.61 + 0 transcript_id "g20.t1"; gene_id "g20"; >--- 744,754 ---- >! chrI AUGUSTUS initial 109204 109232 0.98 + 0 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS internal 110134 110451 1 + 1 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS internal 111387 111618 0.74 + 1 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS terminal 113229 113231 0.64 + 0 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS intron 109233 110133 0.98 + . transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS intron 110452 111386 1 + . transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS intron 111619 113228 0.64 + . transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS CDS 109204 109232 0.98 + 0 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS CDS 110134 110451 1 + 1 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS CDS 111387 111618 0.74 + 1 transcript_id "g20.t1"; gene_id "g20"; >! chrI AUGUSTUS CDS 113229 113231 0.64 + 0 transcript_id "g20.t1"; gene_id "g20"; >*************** >*** 756 **** >! chrI AUGUSTUS 3'-UTR 113232 113257 0.59 + . transcript_id "g20.t1"; gene_id "g20"; >--- 756 ---- >! chrI AUGUSTUS 3'-UTR 113232 113257 0.64 + . transcript_id "g20.t1"; gene_id "g20"; >*************** >*** 774,775 **** >! chrI AUGUSTUS gene 113607 118555 0.08 - . g21 >! chrI AUGUSTUS transcript 113607 118555 0.08 - . g21.t1 >--- 774,775 ---- >! chrI AUGUSTUS gene 113607 118555 0.16 - . g21 >! chrI AUGUSTUS transcript 113607 118555 0.16 - . g21.t1 >*************** >*** 777 **** >! chrI AUGUSTUS 3'-UTR 113607 113785 0.46 - . transcript_id "g21.t1"; gene_id "g21"; >--- 777 ---- >! chrI AUGUSTUS 3'-UTR 113607 113785 0.43 - . transcript_id "g21.t1"; gene_id "g21"; >*************** >*** 783,784 **** >! chrI AUGUSTUS internal 116743 116861 0.67 - 1 transcript_id "g21.t1"; gene_id "g21"; >! chrI AUGUSTUS internal 116983 117070 0.91 - 2 transcript_id "g21.t1"; gene_id "g21"; >--- 783,784 ---- >! chrI AUGUSTUS internal 116743 116861 0.73 - 1 transcript_id "g21.t1"; gene_id "g21"; >! chrI AUGUSTUS internal 116983 117070 0.92 - 2 transcript_id "g21.t1"; gene_id "g21"; >*************** >*** 791 **** >! chrI AUGUSTUS intron 116583 116742 0.66 - . transcript_id "g21.t1"; gene_id "g21"; >--- 791 ---- >! chrI AUGUSTUS intron 116583 116742 0.71 - . transcript_id "g21.t1"; gene_id "g21"; >*************** >*** 793 **** >! chrI AUGUSTUS intron 117071 117122 0.91 - . transcript_id "g21.t1"; gene_id "g21"; >--- 793 ---- >! chrI AUGUSTUS intron 117071 117122 0.92 - . transcript_id "g21.t1"; gene_id "g21"; >*************** >*** 800,801 **** >! chrI AUGUSTUS CDS 116743 116861 0.67 - 1 transcript_id "g21.t1"; gene_id "g21"; >! chrI AUGUSTUS CDS 116983 117070 0.91 - 2 transcript_id "g21.t1"; gene_id "g21"; >--- 800,801 ---- >! chrI AUGUSTUS CDS 116743 116861 0.73 - 1 transcript_id "g21.t1"; gene_id "g21"; >! chrI AUGUSTUS CDS 116983 117070 0.92 - 2 transcript_id "g21.t1"; gene_id "g21"; >*************** >*** 806 **** >! chrI AUGUSTUS 5'-UTR 118521 118555 0.46 - . transcript_id "g21.t1"; gene_id "g21"; >--- 806 ---- >! chrI AUGUSTUS 5'-UTR 118521 118555 0.53 - . transcript_id "g21.t1"; gene_id "g21"; >*************** >*** 826,827 **** >! chrI AUGUSTUS gene 128546 145973 0.28 + . g22 >! chrI AUGUSTUS transcript 128546 145973 0.28 + . g22.t1 >--- 826,827 ---- >! chrI AUGUSTUS gene 128546 145973 0.26 + . g22 >! chrI AUGUSTUS transcript 128546 145973 0.26 + . g22.t1 >*************** >*** 829 **** >! chrI AUGUSTUS 5'-UTR 128546 128591 0.47 + . transcript_id "g22.t1"; gene_id "g22"; >--- 829 ---- >! chrI AUGUSTUS 5'-UTR 128546 128591 0.37 + . transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 831 **** >! chrI AUGUSTUS initial 128592 128775 0.53 + 0 transcript_id "g22.t1"; gene_id "g22"; >--- 831 ---- >! chrI AUGUSTUS initial 128592 128775 0.45 + 0 transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 833 **** >! chrI AUGUSTUS internal 135050 135145 1 + 0 transcript_id "g22.t1"; gene_id "g22"; >--- 833 ---- >! chrI AUGUSTUS internal 135050 135145 0.99 + 0 transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 839 **** >! chrI AUGUSTUS internal 145041 145136 0.99 + 0 transcript_id "g22.t1"; gene_id "g22"; >--- 839 ---- >! chrI AUGUSTUS internal 145041 145136 1 + 0 transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 841,843 **** >! chrI AUGUSTUS intron 128776 134788 0.5 + . transcript_id "g22.t1"; gene_id "g22"; >! chrI AUGUSTUS intron 134923 135049 1 + . transcript_id "g22.t1"; gene_id "g22"; >! chrI AUGUSTUS intron 135146 136532 1 + . transcript_id "g22.t1"; gene_id "g22"; >--- 841,843 ---- >! chrI AUGUSTUS intron 128776 134788 0.44 + . transcript_id "g22.t1"; gene_id "g22"; >! chrI AUGUSTUS intron 134923 135049 0.99 + . transcript_id "g22.t1"; gene_id "g22"; >! chrI AUGUSTUS intron 135146 136532 0.99 + . transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 847 **** >! chrI AUGUSTUS intron 143093 144879 0.87 + . transcript_id "g22.t1"; gene_id "g22"; >--- 847 ---- >! chrI AUGUSTUS intron 143093 144879 0.84 + . transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 849,850 **** >! chrI AUGUSTUS intron 145137 145688 0.99 + . transcript_id "g22.t1"; gene_id "g22"; >! chrI AUGUSTUS CDS 128592 128775 0.53 + 0 transcript_id "g22.t1"; gene_id "g22"; >--- 849,850 ---- >! chrI AUGUSTUS intron 145137 145688 1 + . transcript_id "g22.t1"; gene_id "g22"; >! chrI AUGUSTUS CDS 128592 128775 0.45 + 0 transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 852 **** >! chrI AUGUSTUS CDS 135050 135145 1 + 0 transcript_id "g22.t1"; gene_id "g22"; >--- 852 ---- >! chrI AUGUSTUS CDS 135050 135145 0.99 + 0 transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 858 **** >! chrI AUGUSTUS CDS 145041 145136 0.99 + 0 transcript_id "g22.t1"; gene_id "g22"; >--- 858 ---- >! chrI AUGUSTUS CDS 145041 145136 1 + 0 transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 861 **** >! chrI AUGUSTUS 3'-UTR 145764 145973 0.69 + . transcript_id "g22.t1"; gene_id "g22"; >--- 861 ---- >! chrI AUGUSTUS 3'-UTR 145764 145973 0.76 + . transcript_id "g22.t1"; gene_id "g22"; >*************** >*** 884,885 **** >! chrI AUGUSTUS gene 149016 149456 0.12 + . g23 >! chrI AUGUSTUS transcript 149016 149456 0.12 + . g23.t1 >--- 884,885 ---- >! chrI AUGUSTUS gene 149016 149456 0.11 + . g23 >! chrI AUGUSTUS transcript 149016 149456 0.11 + . g23.t1 >*************** >*** 887 **** >! chrI AUGUSTUS 5'-UTR 149016 149045 0.31 + . transcript_id "g23.t1"; gene_id "g23"; >--- 887 ---- >! chrI AUGUSTUS 5'-UTR 149016 149045 0.24 + . transcript_id "g23.t1"; gene_id "g23"; >*************** >*** 889,890 **** >! chrI AUGUSTUS initial 149046 149254 0.76 + 0 transcript_id "g23.t1"; gene_id "g23"; >! chrI AUGUSTUS terminal 149306 149396 0.97 + 1 transcript_id "g23.t1"; gene_id "g23"; >--- 889,890 ---- >! chrI AUGUSTUS initial 149046 149254 0.65 + 0 transcript_id "g23.t1"; gene_id "g23"; >! chrI AUGUSTUS terminal 149306 149396 0.96 + 1 transcript_id "g23.t1"; gene_id "g23"; >*************** >*** 892,893 **** >! chrI AUGUSTUS CDS 149046 149254 0.76 + 0 transcript_id "g23.t1"; gene_id "g23"; >! chrI AUGUSTUS CDS 149306 149396 0.97 + 1 transcript_id "g23.t1"; gene_id "g23"; >--- 892,893 ---- >! chrI AUGUSTUS CDS 149046 149254 0.65 + 0 transcript_id "g23.t1"; gene_id "g23"; >! chrI AUGUSTUS CDS 149306 149396 0.96 + 1 transcript_id "g23.t1"; gene_id "g23"; >*************** >*** 895 **** >! chrI AUGUSTUS 3'-UTR 149397 149456 0.36 + . transcript_id "g23.t1"; gene_id "g23"; >--- 895 ---- >! chrI AUGUSTUS 3'-UTR 149397 149456 0.44 + . transcript_id "g23.t1"; gene_id "g23"; >*************** >*** 910,911 **** >! chrI AUGUSTUS gene 149852 151305 0.1 - . g24 >! chrI AUGUSTUS transcript 149852 151305 0.1 - . g24.t1 >--- 910,911 ---- >! chrI AUGUSTUS gene 149852 151305 0.12 - . g24 >! chrI AUGUSTUS transcript 149852 151305 0.12 - . g24.t1 >*************** >*** 913 **** >! chrI AUGUSTUS 3'-UTR 149852 149905 0.44 - . transcript_id "g24.t1"; gene_id "g24"; >--- 913 ---- >! chrI AUGUSTUS 3'-UTR 149852 149905 0.35 - . transcript_id "g24.t1"; gene_id "g24"; >*************** >*** 915,922 **** >! chrI AUGUSTUS terminal 149906 150071 0.8 - 1 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS internal 150694 150977 0.66 - 0 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS initial 151236 151238 0.6 - 0 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS intron 150072 150693 0.8 - . transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS intron 150978 151235 0.6 - . transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS CDS 149906 150071 0.8 - 1 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS CDS 150694 150977 0.66 - 0 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS CDS 151236 151238 0.6 - 0 transcript_id "g24.t1"; gene_id "g24"; >--- 915,922 ---- >! chrI AUGUSTUS terminal 149906 150071 0.81 - 1 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS internal 150694 150977 0.69 - 0 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS initial 151236 151238 0.59 - 0 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS intron 150072 150693 0.81 - . transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS intron 150978 151235 0.59 - . transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS CDS 149906 150071 0.81 - 1 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS CDS 150694 150977 0.69 - 0 transcript_id "g24.t1"; gene_id "g24"; >! chrI AUGUSTUS CDS 151236 151238 0.59 - 0 transcript_id "g24.t1"; gene_id "g24"; >*************** >*** 924 **** >! chrI AUGUSTUS 5'-UTR 151239 151305 0.17 - . transcript_id "g24.t1"; gene_id "g24"; >--- 924 ---- >! chrI AUGUSTUS 5'-UTR 151239 151305 0.28 - . transcript_id "g24.t1"; gene_id "g24"; >*************** >*** 941,942 **** >! chrI AUGUSTUS gene 152796 156161 0.06 + . g25 >! chrI AUGUSTUS transcript 152796 156161 0.06 + . g25.t1 >--- 941,942 ---- >! chrI AUGUSTUS gene 152796 156161 0.07 + . g25 >! chrI AUGUSTUS transcript 152796 156161 0.07 + . g25.t1 >*************** >*** 944 **** >! chrI AUGUSTUS 5'-UTR 152796 152986 0.21 + . transcript_id "g25.t1"; gene_id "g25"; >--- 944 ---- >! chrI AUGUSTUS 5'-UTR 152796 152986 0.25 + . transcript_id "g25.t1"; gene_id "g25"; >*************** >*** 950 **** >! chrI AUGUSTUS 3'-UTR 155685 156161 0.27 + . transcript_id "g25.t1"; gene_id "g25"; >--- 950 ---- >! chrI AUGUSTUS 3'-UTR 155685 156161 0.25 + . transcript_id "g25.t1"; gene_id "g25"; >*************** >*** 966,967 **** >! chrI AUGUSTUS gene 160036 166396 0.23 + . g26 >! chrI AUGUSTUS transcript 160036 166396 0.23 + . g26.t1 >--- 966,967 ---- >! chrI AUGUSTUS gene 160036 166396 0.33 + . g26 >! chrI AUGUSTUS transcript 160036 166396 0.33 + . g26.t1 >*************** >*** 969 **** >! chrI AUGUSTUS 5'-UTR 160036 160066 0.37 + . transcript_id "g26.t1"; gene_id "g26"; >--- 969 ---- >! chrI AUGUSTUS 5'-UTR 160036 160066 0.42 + . transcript_id "g26.t1"; gene_id "g26"; >*************** >*** 971 **** >! chrI AUGUSTUS initial 160067 160201 0.91 + 0 transcript_id "g26.t1"; gene_id "g26"; >--- 971 ---- >! chrI AUGUSTUS initial 160067 160201 0.86 + 0 transcript_id "g26.t1"; gene_id "g26"; >*************** >*** 973,974 **** >! chrI AUGUSTUS internal 164020 164104 0.95 + 0 transcript_id "g26.t1"; gene_id "g26"; >! chrI AUGUSTUS internal 164828 164986 0.9 + 2 transcript_id "g26.t1"; gene_id "g26"; >--- 973,974 ---- >! chrI AUGUSTUS internal 164020 164104 0.98 + 0 transcript_id "g26.t1"; gene_id "g26"; >! chrI AUGUSTUS internal 164828 164986 0.95 + 2 transcript_id "g26.t1"; gene_id "g26"; >*************** >*** 978,979 **** >! chrI AUGUSTUS intron 163292 164019 0.95 + . transcript_id "g26.t1"; gene_id "g26"; >! chrI AUGUSTUS intron 164105 164827 0.89 + . transcript_id "g26.t1"; gene_id "g26"; >--- 978,979 ---- >! chrI AUGUSTUS intron 163292 164019 0.98 + . transcript_id "g26.t1"; gene_id "g26"; >! chrI AUGUSTUS intron 164105 164827 0.94 + . transcript_id "g26.t1"; gene_id "g26"; >*************** >*** 982 **** >! chrI AUGUSTUS CDS 160067 160201 0.91 + 0 transcript_id "g26.t1"; gene_id "g26"; >--- 982 ---- >! chrI AUGUSTUS CDS 160067 160201 0.86 + 0 transcript_id "g26.t1"; gene_id "g26"; >*************** >*** 984,985 **** >! chrI AUGUSTUS CDS 164020 164104 0.95 + 0 transcript_id "g26.t1"; gene_id "g26"; >! chrI AUGUSTUS CDS 164828 164986 0.9 + 2 transcript_id "g26.t1"; gene_id "g26"; >--- 984,985 ---- >! chrI AUGUSTUS CDS 164020 164104 0.98 + 0 transcript_id "g26.t1"; gene_id "g26"; >! chrI AUGUSTUS CDS 164828 164986 0.95 + 2 transcript_id "g26.t1"; gene_id "g26"; >*************** >*** 989 **** >! chrI AUGUSTUS 3'-UTR 166344 166396 0.8 + . transcript_id "g26.t1"; gene_id "g26"; >--- 989 ---- >! chrI AUGUSTUS 3'-UTR 166344 166396 0.81 + . transcript_id "g26.t1"; gene_id "g26"; >*************** >*** 1006,1007 **** >! chrI AUGUSTUS gene 168006 176120 0.02 + . g27 >! chrI AUGUSTUS transcript 168006 176120 0.02 + . g27.t1 >--- 1006,1007 ---- >! chrI AUGUSTUS gene 168006 176120 0.05 + . g27 >! chrI AUGUSTUS transcript 168006 176120 0.05 + . g27.t1 >*************** >*** 1009 **** >! chrI AUGUSTUS 5'-UTR 168006 168112 0.23 + . transcript_id "g27.t1"; gene_id "g27"; >--- 1009 ---- >! chrI AUGUSTUS 5'-UTR 168006 168112 0.33 + . transcript_id "g27.t1"; gene_id "g27"; >*************** >*** 1011,1012 **** >! chrI AUGUSTUS initial 168113 168433 0.78 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS internal 172005 172171 0.73 + 0 transcript_id "g27.t1"; gene_id "g27"; >--- 1011,1012 ---- >! chrI AUGUSTUS initial 168113 168433 0.83 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS internal 172005 172171 0.78 + 0 transcript_id "g27.t1"; gene_id "g27"; >*************** >*** 1014,1017 **** >! chrI AUGUSTUS internal 173926 174023 0.83 + 2 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS internal 174890 174985 0.67 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS terminal 175962 175964 0.3 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS intron 168434 172004 0.73 + . transcript_id "g27.t1"; gene_id "g27"; >--- 1014,1017 ---- >! chrI AUGUSTUS internal 173926 174023 0.81 + 2 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS internal 174890 174985 0.74 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS terminal 175962 175964 0.36 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS intron 168434 172004 0.78 + . transcript_id "g27.t1"; gene_id "g27"; >*************** >*** 1020,1023 **** >! chrI AUGUSTUS intron 174024 174889 0.83 + . transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS intron 174986 175961 0.3 + . transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS CDS 168113 168433 0.78 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS CDS 172005 172171 0.73 + 0 transcript_id "g27.t1"; gene_id "g27"; >--- 1020,1023 ---- >! chrI AUGUSTUS intron 174024 174889 0.81 + . transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS intron 174986 175961 0.36 + . transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS CDS 168113 168433 0.83 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS CDS 172005 172171 0.78 + 0 transcript_id "g27.t1"; gene_id "g27"; >*************** >*** 1025,1027 **** >! chrI AUGUSTUS CDS 173926 174023 0.83 + 2 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS CDS 174890 174985 0.67 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS CDS 175962 175964 0.3 + 0 transcript_id "g27.t1"; gene_id "g27"; >--- 1025,1027 ---- >! chrI AUGUSTUS CDS 173926 174023 0.81 + 2 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS CDS 174890 174985 0.74 + 0 transcript_id "g27.t1"; gene_id "g27"; >! chrI AUGUSTUS CDS 175962 175964 0.36 + 0 transcript_id "g27.t1"; gene_id "g27"; >*************** >*** 1029 **** >! chrI AUGUSTUS 3'-UTR 175965 176120 0.11 + . transcript_id "g27.t1"; gene_id "g27"; >--- 1029 ---- >! chrI AUGUSTUS 3'-UTR 175965 176120 0.16 + . transcript_id "g27.t1"; gene_id "g27"; >*************** >*** 1046,1047 **** >! chrI AUGUSTUS gene 177676 180252 0.44 + . g28 >! chrI AUGUSTUS transcript 177676 180252 0.44 + . g28.t1 >--- 1046,1047 ---- >! chrI AUGUSTUS gene 177676 180252 0.36 + . g28 >! chrI AUGUSTUS transcript 177676 180252 0.36 + . g28.t1 >*************** >*** 1049,1050 **** >! chrI AUGUSTUS 5'-UTR 177676 177708 0.75 + . transcript_id "g28.t1"; gene_id "g28"; >! chrI AUGUSTUS 5'-UTR 179455 179481 0.79 + . transcript_id "g28.t1"; gene_id "g28"; >--- 1049,1050 ---- >! chrI AUGUSTUS 5'-UTR 177676 177708 0.73 + . transcript_id "g28.t1"; gene_id "g28"; >! chrI AUGUSTUS 5'-UTR 179455 179481 0.86 + . transcript_id "g28.t1"; gene_id "g28"; >*************** >*** 1055 **** >! chrI AUGUSTUS 3'-UTR 179884 180252 0.73 + . transcript_id "g28.t1"; gene_id "g28"; >--- 1055 ---- >! chrI AUGUSTUS 3'-UTR 179884 180252 0.61 + . transcript_id "g28.t1"; gene_id "g28"; >*************** >*** 1072,1073 **** >! chrI AUGUSTUS gene 185697 186101 0.22 + . g29 >! chrI AUGUSTUS transcript 185697 186101 0.22 + . g29.t1 >--- 1072,1073 ---- >! chrI AUGUSTUS gene 185697 186101 0.19 + . g29 >! chrI AUGUSTUS transcript 185697 186101 0.19 + . g29.t1 >*************** >*** 1075 **** >! chrI AUGUSTUS 5'-UTR 185697 185757 0.9 + . transcript_id "g29.t1"; gene_id "g29"; >--- 1075 ---- >! chrI AUGUSTUS 5'-UTR 185697 185757 0.96 + . transcript_id "g29.t1"; gene_id "g29"; >*************** >*** 1077,1081 **** >! chrI AUGUSTUS initial 185758 185919 0.99 + 0 transcript_id "g29.t1"; gene_id "g29"; >! chrI AUGUSTUS terminal 185986 186030 0.6 + 0 transcript_id "g29.t1"; gene_id "g29"; >! chrI AUGUSTUS intron 185920 185985 0.6 + . transcript_id "g29.t1"; gene_id "g29"; >! chrI AUGUSTUS CDS 185758 185919 0.99 + 0 transcript_id "g29.t1"; gene_id "g29"; >! chrI AUGUSTUS CDS 185986 186030 0.6 + 0 transcript_id "g29.t1"; gene_id "g29"; >--- 1077,1081 ---- >! chrI AUGUSTUS initial 185758 185919 1 + 0 transcript_id "g29.t1"; gene_id "g29"; >! chrI AUGUSTUS terminal 185986 186030 0.64 + 0 transcript_id "g29.t1"; gene_id "g29"; >! chrI AUGUSTUS intron 185920 185985 0.64 + . transcript_id "g29.t1"; gene_id "g29"; >! chrI AUGUSTUS CDS 185758 185919 1 + 0 transcript_id "g29.t1"; gene_id "g29"; >! chrI AUGUSTUS CDS 185986 186030 0.64 + 0 transcript_id "g29.t1"; gene_id "g29"; >*************** >*** 1083 **** >! chrI AUGUSTUS 3'-UTR 186031 186101 0.24 + . transcript_id "g29.t1"; gene_id "g29"; >--- 1083 ---- >! chrI AUGUSTUS 3'-UTR 186031 186101 0.2 + . transcript_id "g29.t1"; gene_id "g29"; >*************** >*** 1097,1098 **** >! chrI AUGUSTUS gene 192317 209633 0.05 + . g30 >! chrI AUGUSTUS transcript 192317 209633 0.05 + . g30.t1 >--- 1097,1098 ---- >! chrI AUGUSTUS gene 192317 209633 0.11 + . g30 >! chrI AUGUSTUS transcript 192317 209633 0.11 + . g30.t1 >*************** >*** 1100 **** >! chrI AUGUSTUS 5'-UTR 192317 192428 0.41 + . transcript_id "g30.t1"; gene_id "g30"; >--- 1100 ---- >! chrI AUGUSTUS 5'-UTR 192317 192428 0.43 + . transcript_id "g30.t1"; gene_id "g30"; >*************** >*** 1102 **** >! chrI AUGUSTUS initial 192429 192748 0.93 + 0 transcript_id "g30.t1"; gene_id "g30"; >--- 1102 ---- >! chrI AUGUSTUS initial 192429 192748 0.85 + 0 transcript_id "g30.t1"; gene_id "g30"; >*************** >*** 1104,1109 **** >! chrI AUGUSTUS internal 195400 196616 0.54 + 2 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 197190 197285 0.99 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 200011 200150 0.97 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 201731 202169 0.99 + 1 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 203575 203865 0.99 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 204926 205309 1 + 0 transcript_id "g30.t1"; gene_id "g30"; >--- 1104,1109 ---- >! chrI AUGUSTUS internal 195400 196616 0.61 + 2 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 197190 197285 1 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 200011 200150 0.98 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 201731 202169 1 + 1 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 203575 203865 1 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS internal 204926 205309 0.98 + 0 transcript_id "g30.t1"; gene_id "g30"; >*************** >*** 1112 **** >! chrI AUGUSTUS intron 192749 192844 0.93 + . transcript_id "g30.t1"; gene_id "g30"; >--- 1112 ---- >! chrI AUGUSTUS intron 192749 192844 0.85 + . transcript_id "g30.t1"; gene_id "g30"; >*************** >*** 1114,1121 **** >! chrI AUGUSTUS intron 196617 197189 0.54 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 197286 200010 0.99 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 200151 201730 0.97 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 202170 203574 0.99 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 203866 204925 1 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 205310 207320 0.99 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 207840 209094 1 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 192429 192748 0.93 + 0 transcript_id "g30.t1"; gene_id "g30"; >--- 1114,1121 ---- >! chrI AUGUSTUS intron 196617 197189 0.61 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 197286 200010 1 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 200151 201730 0.98 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 202170 203574 1 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 203866 204925 0.98 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 205310 207320 1 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS intron 207840 209094 0.98 + . transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 192429 192748 0.85 + 0 transcript_id "g30.t1"; gene_id "g30"; >*************** >*** 1123,1128 **** >! chrI AUGUSTUS CDS 195400 196616 0.54 + 2 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 197190 197285 0.99 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 200011 200150 0.97 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 201731 202169 0.99 + 1 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 203575 203865 0.99 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 204926 205309 1 + 0 transcript_id "g30.t1"; gene_id "g30"; >--- 1123,1128 ---- >! chrI AUGUSTUS CDS 195400 196616 0.61 + 2 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 197190 197285 1 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 200011 200150 0.98 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 201731 202169 1 + 1 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 203575 203865 1 + 0 transcript_id "g30.t1"; gene_id "g30"; >! chrI AUGUSTUS CDS 204926 205309 0.98 + 0 transcript_id "g30.t1"; gene_id "g30"; >*************** >*** 1132 **** >! chrI AUGUSTUS 3'-UTR 209335 209633 0.29 + . transcript_id "g30.t1"; gene_id "g30"; >--- 1132 ---- >! chrI AUGUSTUS 3'-UTR 209335 209633 0.41 + . transcript_id "g30.t1"; gene_id "g30"; >*************** >*** 1160,1161 **** >! chrI AUGUSTUS gene 216127 219441 0.09 + . g31 >! chrI AUGUSTUS transcript 216127 219441 0.09 + . g31.t1 >--- 1160,1161 ---- >! chrI AUGUSTUS gene 216127 219441 0.12 + . g31 >! chrI AUGUSTUS transcript 216127 219441 0.12 + . g31.t1 >*************** >*** 1163 **** >! chrI AUGUSTUS 5'-UTR 216127 216217 0.3 + . transcript_id "g31.t1"; gene_id "g31"; >--- 1163 ---- >! chrI AUGUSTUS 5'-UTR 216127 216217 0.29 + . transcript_id "g31.t1"; gene_id "g31"; >*************** >*** 1165,1166 **** >! chrI AUGUSTUS initial 216218 216284 0.42 + 0 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS internal 217090 217193 0.98 + 2 transcript_id "g31.t1"; gene_id "g31"; >--- 1165,1166 ---- >! chrI AUGUSTUS initial 216218 216284 0.45 + 0 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS internal 217090 217193 0.93 + 2 transcript_id "g31.t1"; gene_id "g31"; >*************** >*** 1168,1170 **** >! chrI AUGUSTUS internal 218964 219165 0.99 + 1 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS terminal 219218 219418 0.6 + 0 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS intron 216285 217089 0.41 + . transcript_id "g31.t1"; gene_id "g31"; >--- 1168,1170 ---- >! chrI AUGUSTUS internal 218964 219165 1 + 1 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS terminal 219218 219418 0.72 + 0 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS intron 216285 217089 0.42 + . transcript_id "g31.t1"; gene_id "g31"; >*************** >*** 1173,1175 **** >! chrI AUGUSTUS intron 219166 219217 0.6 + . transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS CDS 216218 216284 0.42 + 0 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS CDS 217090 217193 0.98 + 2 transcript_id "g31.t1"; gene_id "g31"; >--- 1173,1175 ---- >! chrI AUGUSTUS intron 219166 219217 0.72 + . transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS CDS 216218 216284 0.45 + 0 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS CDS 217090 217193 0.93 + 2 transcript_id "g31.t1"; gene_id "g31"; >*************** >*** 1177,1178 **** >! chrI AUGUSTUS CDS 218964 219165 0.99 + 1 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS CDS 219218 219418 0.6 + 0 transcript_id "g31.t1"; gene_id "g31"; >--- 1177,1178 ---- >! chrI AUGUSTUS CDS 218964 219165 1 + 1 transcript_id "g31.t1"; gene_id "g31"; >! chrI AUGUSTUS CDS 219218 219418 0.72 + 0 transcript_id "g31.t1"; gene_id "g31"; >*************** >*** 1180 **** >! chrI AUGUSTUS 3'-UTR 219419 219441 0.45 + . transcript_id "g31.t1"; gene_id "g31"; >--- 1180 ---- >! chrI AUGUSTUS 3'-UTR 219419 219441 0.5 + . transcript_id "g31.t1"; gene_id "g31"; >*************** >*** 1198,1199 **** >! chrI AUGUSTUS gene 219479 222306 0.35 - . g32 >! chrI AUGUSTUS transcript 219479 222306 0.35 - . g32.t1 >--- 1198,1199 ---- >! chrI AUGUSTUS gene 219479 222306 0.36 - . g32 >! chrI AUGUSTUS transcript 219479 222306 0.36 - . g32.t1 >*************** >*** 1201 **** >! chrI AUGUSTUS 3'-UTR 219479 219546 0.88 - . transcript_id "g32.t1"; gene_id "g32"; >--- 1201 ---- >! chrI AUGUSTUS 3'-UTR 219479 219546 0.87 - . transcript_id "g32.t1"; gene_id "g32"; >*************** >*** 1205,1206 **** >! chrI AUGUSTUS internal 222083 222201 1 - 2 transcript_id "g32.t1"; gene_id "g32"; >! chrI AUGUSTUS initial 222243 222264 0.4 - 0 transcript_id "g32.t1"; gene_id "g32"; >--- 1205,1206 ---- >! chrI AUGUSTUS internal 222083 222201 0.99 - 2 transcript_id "g32.t1"; gene_id "g32"; >! chrI AUGUSTUS initial 222243 222264 0.41 - 0 transcript_id "g32.t1"; gene_id "g32"; >*************** >*** 1208 **** >! chrI AUGUSTUS intron 220930 222082 1 - . transcript_id "g32.t1"; gene_id "g32"; >--- 1208 ---- >! chrI AUGUSTUS intron 220930 222082 0.99 - . transcript_id "g32.t1"; gene_id "g32"; >*************** >*** 1212,1213 **** >! chrI AUGUSTUS CDS 222083 222201 1 - 2 transcript_id "g32.t1"; gene_id "g32"; >! chrI AUGUSTUS CDS 222243 222264 0.4 - 0 transcript_id "g32.t1"; gene_id "g32"; >--- 1212,1213 ---- >! chrI AUGUSTUS CDS 222083 222201 0.99 - 2 transcript_id "g32.t1"; gene_id "g32"; >! chrI AUGUSTUS CDS 222243 222264 0.41 - 0 transcript_id "g32.t1"; gene_id "g32"; >*************** >*** 1215 **** >! chrI AUGUSTUS 5'-UTR 222265 222306 0.4 - . transcript_id "g32.t1"; gene_id "g32"; >--- 1215 ---- >! chrI AUGUSTUS 5'-UTR 222265 222306 0.39 - . transcript_id "g32.t1"; gene_id "g32"; >*************** >*** 1232,1233 **** >! chrI AUGUSTUS gene 223306 233186 0.12 - . g33 >! chrI AUGUSTUS transcript 223306 233186 0.12 - . g33.t1 >--- 1232,1233 ---- >! chrI AUGUSTUS gene 223306 233186 0.16 - . g33 >! chrI AUGUSTUS transcript 223306 233186 0.16 - . g33.t1 >*************** >*** 1235 **** >! chrI AUGUSTUS 3'-UTR 223306 223353 0.99 - . transcript_id "g33.t1"; gene_id "g33"; >--- 1235 ---- >! chrI AUGUSTUS 3'-UTR 223306 223353 0.98 - . transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1238,1239 **** >! chrI AUGUSTUS internal 223630 223728 0.96 - 2 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS internal 224302 224476 0.75 - 0 transcript_id "g33.t1"; gene_id "g33"; >--- 1238,1239 ---- >! chrI AUGUSTUS internal 223630 223728 0.97 - 2 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS internal 224302 224476 0.82 - 0 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1241,1243 **** >! chrI AUGUSTUS internal 225618 226411 0.99 - 0 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS internal 226801 226944 0.67 - 0 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS internal 226992 227111 0.52 - 0 transcript_id "g33.t1"; gene_id "g33"; >--- 1241,1243 ---- >! chrI AUGUSTUS internal 225618 226411 1 - 0 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS internal 226801 226944 0.8 - 0 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS internal 226992 227111 0.51 - 0 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1247 **** >! chrI AUGUSTUS internal 230294 230412 1 - 2 transcript_id "g33.t1"; gene_id "g33"; >--- 1247 ---- >! chrI AUGUSTUS internal 230294 230412 0.99 - 2 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1250 **** >! chrI AUGUSTUS internal 231185 231432 0.99 - 2 transcript_id "g33.t1"; gene_id "g33"; >--- 1250 ---- >! chrI AUGUSTUS internal 231185 231432 1 - 2 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1252 **** >! chrI AUGUSTUS internal 232848 233014 0.88 - 0 transcript_id "g33.t1"; gene_id "g33"; >--- 1252 ---- >! chrI AUGUSTUS internal 232848 233014 0.87 - 0 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1254,1255 **** >! chrI AUGUSTUS intron 223572 223629 0.96 - . transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS intron 223729 224301 0.72 - . transcript_id "g33.t1"; gene_id "g33"; >--- 1254,1255 ---- >! chrI AUGUSTUS intron 223572 223629 0.97 - . transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS intron 223729 224301 0.79 - . transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1257,1259 **** >! chrI AUGUSTUS intron 224890 225617 0.99 - . transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS intron 226412 226800 0.67 - . transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS intron 226945 226991 0.52 - . transcript_id "g33.t1"; gene_id "g33"; >--- 1257,1259 ---- >! chrI AUGUSTUS intron 224890 225617 1 - . transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS intron 226412 226800 0.8 - . transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS intron 226945 226991 0.51 - . transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1264 **** >! chrI AUGUSTUS intron 230413 230466 0.97 - . transcript_id "g33.t1"; gene_id "g33"; >--- 1264 ---- >! chrI AUGUSTUS intron 230413 230466 0.96 - . transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1268 **** >! chrI AUGUSTUS intron 231596 232847 0.88 - . transcript_id "g33.t1"; gene_id "g33"; >--- 1268 ---- >! chrI AUGUSTUS intron 231596 232847 0.87 - . transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1271,1272 **** >! chrI AUGUSTUS CDS 223630 223728 0.96 - 2 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS CDS 224302 224476 0.75 - 0 transcript_id "g33.t1"; gene_id "g33"; >--- 1271,1272 ---- >! chrI AUGUSTUS CDS 223630 223728 0.97 - 2 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS CDS 224302 224476 0.82 - 0 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1274,1276 **** >! chrI AUGUSTUS CDS 225618 226411 0.99 - 0 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS CDS 226801 226944 0.67 - 0 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS CDS 226992 227111 0.52 - 0 transcript_id "g33.t1"; gene_id "g33"; >--- 1274,1276 ---- >! chrI AUGUSTUS CDS 225618 226411 1 - 0 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS CDS 226801 226944 0.8 - 0 transcript_id "g33.t1"; gene_id "g33"; >! chrI AUGUSTUS CDS 226992 227111 0.51 - 0 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1280 **** >! chrI AUGUSTUS CDS 230294 230412 1 - 2 transcript_id "g33.t1"; gene_id "g33"; >--- 1280 ---- >! chrI AUGUSTUS CDS 230294 230412 0.99 - 2 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1283 **** >! chrI AUGUSTUS CDS 231185 231432 0.99 - 2 transcript_id "g33.t1"; gene_id "g33"; >--- 1283 ---- >! chrI AUGUSTUS CDS 231185 231432 1 - 2 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1285 **** >! chrI AUGUSTUS CDS 232848 233014 0.88 - 0 transcript_id "g33.t1"; gene_id "g33"; >--- 1285 ---- >! chrI AUGUSTUS CDS 232848 233014 0.87 - 0 transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1288 **** >! chrI AUGUSTUS 5'-UTR 233101 233186 0.51 - . transcript_id "g33.t1"; gene_id "g33"; >--- 1288 ---- >! chrI AUGUSTUS 5'-UTR 233101 233186 0.46 - . transcript_id "g33.t1"; gene_id "g33"; >*************** >*** 1315,1316 **** >! chrI AUGUSTUS gene 233745 234876 0.7 - . g34 >! chrI AUGUSTUS transcript 233745 234876 0.7 - . g34.t1 >--- 1315,1316 ---- >! chrI AUGUSTUS gene 233745 234876 0.62 - . g34 >! chrI AUGUSTUS transcript 233745 234876 0.62 - . g34.t1 >*************** >*** 1318 **** >! chrI AUGUSTUS 3'-UTR 233745 233895 0.76 - . transcript_id "g34.t1"; gene_id "g34"; >--- 1318 ---- >! chrI AUGUSTUS 3'-UTR 233745 233895 0.73 - . transcript_id "g34.t1"; gene_id "g34"; >*************** >*** 1320 **** >! chrI AUGUSTUS terminal 233896 233976 0.95 - 0 transcript_id "g34.t1"; gene_id "g34"; >--- 1320 ---- >! chrI AUGUSTUS terminal 233896 233976 0.93 - 0 transcript_id "g34.t1"; gene_id "g34"; >*************** >*** 1325 **** >! chrI AUGUSTUS intron 233977 234055 0.95 - . transcript_id "g34.t1"; gene_id "g34"; >--- 1325 ---- >! chrI AUGUSTUS intron 233977 234055 0.93 - . transcript_id "g34.t1"; gene_id "g34"; >*************** >*** 1329 **** >! chrI AUGUSTUS CDS 233896 233976 0.95 - 0 transcript_id "g34.t1"; gene_id "g34"; >--- 1329 ---- >! chrI AUGUSTUS CDS 233896 233976 0.93 - 0 transcript_id "g34.t1"; gene_id "g34"; >*************** >*** 1335 **** >! chrI AUGUSTUS 5'-UTR 234848 234876 0.91 - . transcript_id "g34.t1"; gene_id "g34"; >--- 1335 ---- >! chrI AUGUSTUS 5'-UTR 234848 234876 0.83 - . transcript_id "g34.t1"; gene_id "g34"; >*************** >*** 1351,1352 **** >! chrI AUGUSTUS gene 235606 241206 0.72 - . g35 >! chrI AUGUSTUS transcript 235606 241206 0.72 - . g35.t1 >--- 1351,1352 ---- >! chrI AUGUSTUS gene 235606 241206 0.81 - . g35 >! chrI AUGUSTUS transcript 235606 241206 0.81 - . g35.t1 >*************** >*** 1354 **** >! chrI AUGUSTUS 3'-UTR 235606 235641 0.95 - . transcript_id "g35.t1"; gene_id "g35"; >--- 1354 ---- >! chrI AUGUSTUS 3'-UTR 235606 235641 0.94 - . transcript_id "g35.t1"; gene_id "g35"; >*************** >*** 1383 **** >! chrI AUGUSTUS 5'-UTR 241073 241206 0.77 - . transcript_id "g35.t1"; gene_id "g35"; >--- 1383 ---- >! chrI AUGUSTUS 5'-UTR 241073 241206 0.86 - . transcript_id "g35.t1"; gene_id "g35"; >*************** >*** 1411,1412 **** >! chrI AUGUSTUS gene 242107 247297 0.15 + . g36 >! chrI AUGUSTUS transcript 242107 247297 0.15 + . g36.t1 >--- 1411,1412 ---- >! chrI AUGUSTUS gene 242107 247297 0.1 + . g36 >! chrI AUGUSTUS transcript 242107 247297 0.1 + . g36.t1 >*************** >*** 1414 **** >! chrI AUGUSTUS 5'-UTR 242107 242230 0.25 + . transcript_id "g36.t1"; gene_id "g36"; >--- 1414 ---- >! chrI AUGUSTUS 5'-UTR 242107 242230 0.28 + . transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1417,1419 **** >! chrI AUGUSTUS internal 243404 243593 0.88 + 1 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS internal 244086 244205 0.98 + 0 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS internal 244359 244559 0.92 + 0 transcript_id "g36.t1"; gene_id "g36"; >--- 1417,1419 ---- >! chrI AUGUSTUS internal 243404 243593 0.79 + 1 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS internal 244086 244205 0.97 + 0 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS internal 244359 244559 0.91 + 0 transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1421 **** >! chrI AUGUSTUS internal 245527 245646 1 + 0 transcript_id "g36.t1"; gene_id "g36"; >--- 1421 ---- >! chrI AUGUSTUS internal 245527 245646 0.99 + 0 transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1423,1427 **** >! chrI AUGUSTUS terminal 247153 247224 0.99 + 0 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS intron 242365 243403 0.94 + . transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS intron 243594 244085 0.91 + . transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS intron 244206 244358 0.96 + . transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS intron 244560 244776 0.83 + . transcript_id "g36.t1"; gene_id "g36"; >--- 1423,1427 ---- >! chrI AUGUSTUS terminal 247153 247224 1 + 0 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS intron 242365 243403 0.88 + . transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS intron 243594 244085 0.88 + . transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS intron 244206 244358 0.97 + . transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS intron 244560 244776 0.81 + . transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1429 **** >! chrI AUGUSTUS intron 245647 246140 1 + . transcript_id "g36.t1"; gene_id "g36"; >--- 1429 ---- >! chrI AUGUSTUS intron 245647 246140 0.99 + . transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1432,1434 **** >! chrI AUGUSTUS CDS 243404 243593 0.88 + 1 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS CDS 244086 244205 0.98 + 0 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS CDS 244359 244559 0.92 + 0 transcript_id "g36.t1"; gene_id "g36"; >--- 1432,1434 ---- >! chrI AUGUSTUS CDS 243404 243593 0.79 + 1 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS CDS 244086 244205 0.97 + 0 transcript_id "g36.t1"; gene_id "g36"; >! chrI AUGUSTUS CDS 244359 244559 0.91 + 0 transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1436 **** >! chrI AUGUSTUS CDS 245527 245646 1 + 0 transcript_id "g36.t1"; gene_id "g36"; >--- 1436 ---- >! chrI AUGUSTUS CDS 245527 245646 0.99 + 0 transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1438 **** >! chrI AUGUSTUS CDS 247153 247224 0.99 + 0 transcript_id "g36.t1"; gene_id "g36"; >--- 1438 ---- >! chrI AUGUSTUS CDS 247153 247224 1 + 0 transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1440 **** >! chrI AUGUSTUS 3'-UTR 247225 247297 0.67 + . transcript_id "g36.t1"; gene_id "g36"; >--- 1440 ---- >! chrI AUGUSTUS 3'-UTR 247225 247297 0.66 + . transcript_id "g36.t1"; gene_id "g36"; >*************** >*** 1460,1461 **** >! chrI AUGUSTUS gene 247367 254902 0.06 + . g37 >! chrI AUGUSTUS transcript 247367 254902 0.06 + . g37.t1 >--- 1460,1461 ---- >! chrI AUGUSTUS gene 247367 254902 0.02 + . g37 >! chrI AUGUSTUS transcript 247367 254902 0.02 + . g37.t1 >*************** >*** 1463,1464 **** >! chrI AUGUSTUS 5'-UTR 247367 247473 0.2 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS 5'-UTR 250132 250157 0.86 + . transcript_id "g37.t1"; gene_id "g37"; >--- 1463,1464 ---- >! chrI AUGUSTUS 5'-UTR 247367 247473 0.12 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS 5'-UTR 250132 250157 0.75 + . transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1466,1470 **** >! chrI AUGUSTUS initial 250158 250212 0.85 + 0 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS internal 250272 250389 0.97 + 2 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS internal 250712 250837 0.97 + 1 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS internal 251468 251604 0.99 + 1 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS internal 252340 252683 0.83 + 2 transcript_id "g37.t1"; gene_id "g37"; >--- 1466,1470 ---- >! chrI AUGUSTUS initial 250158 250212 0.76 + 0 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS internal 250272 250389 1 + 2 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS internal 250712 250837 0.93 + 1 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS internal 251468 251604 1 + 1 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS internal 252340 252683 0.87 + 2 transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1473 **** >! chrI AUGUSTUS internal 253698 253849 1 + 2 transcript_id "g37.t1"; gene_id "g37"; >--- 1473 ---- >! chrI AUGUSTUS internal 253698 253849 0.99 + 2 transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1476 **** >! chrI AUGUSTUS internal 254411 254583 1 + 2 transcript_id "g37.t1"; gene_id "g37"; >--- 1476 ---- >! chrI AUGUSTUS internal 254411 254583 0.99 + 2 transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1478,1482 **** >! chrI AUGUSTUS intron 250213 250271 0.98 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS intron 250390 250711 0.95 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS intron 250838 251467 0.98 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS intron 251605 252339 0.99 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS intron 252684 252882 1 + . transcript_id "g37.t1"; gene_id "g37"; >--- 1478,1482 ---- >! chrI AUGUSTUS intron 250213 250271 1 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS intron 250390 250711 0.93 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS intron 250838 251467 0.93 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS intron 251605 252339 1 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS intron 252684 252882 0.99 + . transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1485 **** >! chrI AUGUSTUS intron 253850 253950 1 + . transcript_id "g37.t1"; gene_id "g37"; >--- 1485 ---- >! chrI AUGUSTUS intron 253850 253950 0.99 + . transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1488,1493 **** >! chrI AUGUSTUS intron 254584 254695 1 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 250158 250212 0.85 + 0 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 250272 250389 0.97 + 2 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 250712 250837 0.97 + 1 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 251468 251604 0.99 + 1 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 252340 252683 0.83 + 2 transcript_id "g37.t1"; gene_id "g37"; >--- 1488,1493 ---- >! chrI AUGUSTUS intron 254584 254695 0.99 + . transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 250158 250212 0.76 + 0 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 250272 250389 1 + 2 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 250712 250837 0.93 + 1 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 251468 251604 1 + 1 transcript_id "g37.t1"; gene_id "g37"; >! chrI AUGUSTUS CDS 252340 252683 0.87 + 2 transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1496 **** >! chrI AUGUSTUS CDS 253698 253849 1 + 2 transcript_id "g37.t1"; gene_id "g37"; >--- 1496 ---- >! chrI AUGUSTUS CDS 253698 253849 0.99 + 2 transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1499 **** >! chrI AUGUSTUS CDS 254411 254583 1 + 2 transcript_id "g37.t1"; gene_id "g37"; >--- 1499 ---- >! chrI AUGUSTUS CDS 254411 254583 0.99 + 2 transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1502 **** >! chrI AUGUSTUS 3'-UTR 254801 254902 0.47 + . transcript_id "g37.t1"; gene_id "g37"; >--- 1502 ---- >! chrI AUGUSTUS 3'-UTR 254801 254902 0.45 + . transcript_id "g37.t1"; gene_id "g37"; >*************** >*** 1523,1524 **** >! chrI AUGUSTUS gene 255928 272896 0.06 - . g38 >! chrI AUGUSTUS transcript 255928 272896 0.06 - . g38.t1 >--- 1523,1524 ---- >! chrI AUGUSTUS gene 255928 272896 0.08 - . g38 >! chrI AUGUSTUS transcript 255928 272896 0.08 - . g38.t1 >*************** >*** 1526 **** >! chrI AUGUSTUS 3'-UTR 255928 256152 0.62 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1526 ---- >! chrI AUGUSTUS 3'-UTR 255928 256152 0.61 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1529,1530 **** >! chrI AUGUSTUS internal 257053 257408 0.59 - 2 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS internal 258592 258833 0.73 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1529,1530 ---- >! chrI AUGUSTUS internal 257053 257408 0.65 - 2 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS internal 258592 258833 0.77 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1533,1534 **** >! chrI AUGUSTUS internal 259257 259520 0.96 - 0 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS internal 260371 260630 0.99 - 2 transcript_id "g38.t1"; gene_id "g38"; >--- 1533,1534 ---- >! chrI AUGUSTUS internal 259257 259520 0.91 - 0 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS internal 260371 260630 1 - 2 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1537 **** >! chrI AUGUSTUS internal 261662 261785 1 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1537 ---- >! chrI AUGUSTUS internal 261662 261785 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1540,1541 **** >! chrI AUGUSTUS internal 264237 264452 0.99 - 2 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS internal 264524 264663 0.98 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1540,1541 ---- >! chrI AUGUSTUS internal 264237 264452 1 - 2 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS internal 264524 264663 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1543 **** >! chrI AUGUSTUS internal 265488 265570 0.98 - 0 transcript_id "g38.t1"; gene_id "g38"; >--- 1543 ---- >! chrI AUGUSTUS internal 265488 265570 0.95 - 0 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1551,1552 **** >! chrI AUGUSTUS internal 268805 268931 0.99 - 0 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS internal 268977 269192 0.99 - 0 transcript_id "g38.t1"; gene_id "g38"; >--- 1551,1552 ---- >! chrI AUGUSTUS internal 268805 268931 1 - 0 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS internal 268977 269192 1 - 0 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1554 **** >! chrI AUGUSTUS internal 270206 270392 0.97 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1554 ---- >! chrI AUGUSTUS internal 270206 270392 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1556 **** >! chrI AUGUSTUS internal 271638 272118 0.97 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1556 ---- >! chrI AUGUSTUS internal 271638 272118 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1559 **** >! chrI AUGUSTUS initial 272688 272867 0.49 - 0 transcript_id "g38.t1"; gene_id "g38"; >--- 1559 ---- >! chrI AUGUSTUS initial 272688 272867 0.5 - 0 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1561 **** >! chrI AUGUSTUS intron 257409 258591 0.6 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1561 ---- >! chrI AUGUSTUS intron 257409 258591 0.67 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1564,1565 **** >! chrI AUGUSTUS intron 259218 259256 0.96 - . transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS intron 259521 260370 0.99 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1564,1565 ---- >! chrI AUGUSTUS intron 259218 259256 0.91 - . transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS intron 259521 260370 1 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1570 **** >! chrI AUGUSTUS intron 262439 262480 0.97 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1570 ---- >! chrI AUGUSTUS intron 262439 262480 0.98 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1572 **** >! chrI AUGUSTUS intron 264453 264523 0.98 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1572 ---- >! chrI AUGUSTUS intron 264453 264523 0.99 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1574 **** >! chrI AUGUSTUS intron 264846 265487 0.98 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1574 ---- >! chrI AUGUSTUS intron 264846 265487 0.95 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1583 **** >! chrI AUGUSTUS intron 268932 268976 0.99 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1583 ---- >! chrI AUGUSTUS intron 268932 268976 1 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1585 **** >! chrI AUGUSTUS intron 269357 270205 0.97 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1585 ---- >! chrI AUGUSTUS intron 269357 270205 0.99 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1587 **** >! chrI AUGUSTUS intron 270665 271637 0.97 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1587 ---- >! chrI AUGUSTUS intron 270665 271637 0.99 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1590 **** >! chrI AUGUSTUS intron 272634 272687 0.49 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1590 ---- >! chrI AUGUSTUS intron 272634 272687 0.53 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1592,1593 **** >! chrI AUGUSTUS CDS 257053 257408 0.59 - 2 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS CDS 258592 258833 0.73 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1592,1593 ---- >! chrI AUGUSTUS CDS 257053 257408 0.65 - 2 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS CDS 258592 258833 0.77 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1596,1597 **** >! chrI AUGUSTUS CDS 259257 259520 0.96 - 0 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS CDS 260371 260630 0.99 - 2 transcript_id "g38.t1"; gene_id "g38"; >--- 1596,1597 ---- >! chrI AUGUSTUS CDS 259257 259520 0.91 - 0 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS CDS 260371 260630 1 - 2 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1600 **** >! chrI AUGUSTUS CDS 261662 261785 1 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1600 ---- >! chrI AUGUSTUS CDS 261662 261785 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1603,1604 **** >! chrI AUGUSTUS CDS 264237 264452 0.99 - 2 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS CDS 264524 264663 0.98 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1603,1604 ---- >! chrI AUGUSTUS CDS 264237 264452 1 - 2 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS CDS 264524 264663 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1606 **** >! chrI AUGUSTUS CDS 265488 265570 0.98 - 0 transcript_id "g38.t1"; gene_id "g38"; >--- 1606 ---- >! chrI AUGUSTUS CDS 265488 265570 0.95 - 0 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1614,1615 **** >! chrI AUGUSTUS CDS 268805 268931 0.99 - 0 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS CDS 268977 269192 0.99 - 0 transcript_id "g38.t1"; gene_id "g38"; >--- 1614,1615 ---- >! chrI AUGUSTUS CDS 268805 268931 1 - 0 transcript_id "g38.t1"; gene_id "g38"; >! chrI AUGUSTUS CDS 268977 269192 1 - 0 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1617 **** >! chrI AUGUSTUS CDS 270206 270392 0.97 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1617 ---- >! chrI AUGUSTUS CDS 270206 270392 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1619 **** >! chrI AUGUSTUS CDS 271638 272118 0.97 - 1 transcript_id "g38.t1"; gene_id "g38"; >--- 1619 ---- >! chrI AUGUSTUS CDS 271638 272118 0.99 - 1 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1622 **** >! chrI AUGUSTUS CDS 272688 272867 0.49 - 0 transcript_id "g38.t1"; gene_id "g38"; >--- 1622 ---- >! chrI AUGUSTUS CDS 272688 272867 0.5 - 0 transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1624 **** >! chrI AUGUSTUS 5'-UTR 272868 272896 0.44 - . transcript_id "g38.t1"; gene_id "g38"; >--- 1624 ---- >! chrI AUGUSTUS 5'-UTR 272868 272896 0.51 - . transcript_id "g38.t1"; gene_id "g38"; >*************** >*** 1659,1660 **** >! chrI AUGUSTUS gene 278477 280841 0.12 + . g39 >! chrI AUGUSTUS transcript 278477 280841 0.12 + . g39.t1 >--- 1659,1660 ---- >! chrI AUGUSTUS gene 278477 280841 0.14 + . g39 >! chrI AUGUSTUS transcript 278477 280841 0.14 + . g39.t1 >*************** >*** 1662,1663 **** >! chrI AUGUSTUS 5'-UTR 278477 278489 0.27 + . transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS 5'-UTR 279788 279847 0.84 + . transcript_id "g39.t1"; gene_id "g39"; >--- 1662,1663 ---- >! chrI AUGUSTUS 5'-UTR 278477 278489 0.36 + . transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS 5'-UTR 279788 279847 0.76 + . transcript_id "g39.t1"; gene_id "g39"; >*************** >*** 1665,1669 **** >! chrI AUGUSTUS initial 279848 279916 0.85 + 0 transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS terminal 280388 280801 0.97 + 0 transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS intron 279917 280387 1 + . transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS CDS 279848 279916 0.85 + 0 transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS CDS 280388 280801 0.97 + 0 transcript_id "g39.t1"; gene_id "g39"; >--- 1665,1669 ---- >! chrI AUGUSTUS initial 279848 279916 0.75 + 0 transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS terminal 280388 280801 0.99 + 0 transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS intron 279917 280387 0.99 + . transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS CDS 279848 279916 0.75 + 0 transcript_id "g39.t1"; gene_id "g39"; >! chrI AUGUSTUS CDS 280388 280801 0.99 + 0 transcript_id "g39.t1"; gene_id "g39"; >*************** >*** 1671 **** >! chrI AUGUSTUS 3'-UTR 280802 280841 0.47 + . transcript_id "g39.t1"; gene_id "g39"; >--- 1671 ---- >! chrI AUGUSTUS 3'-UTR 280802 280841 0.53 + . transcript_id "g39.t1"; gene_id "g39"; >*************** >*** 1687,1688 **** >! chrI AUGUSTUS gene 281540 291476 0.12 - . g40 >! chrI AUGUSTUS transcript 281540 291476 0.12 - . g40.t1 >--- 1687,1688 ---- >! chrI AUGUSTUS gene 281540 291476 0.16 - . g40 >! chrI AUGUSTUS transcript 281540 291476 0.16 - . g40.t1 >*************** >*** 1690 **** >! chrI AUGUSTUS 3'-UTR 281540 281620 0.64 - . transcript_id "g40.t1"; gene_id "g40"; >--- 1690 ---- >! chrI AUGUSTUS 3'-UTR 281540 281620 0.6 - . transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1695 **** >! chrI AUGUSTUS internal 286071 286181 0.96 - 0 transcript_id "g40.t1"; gene_id "g40"; >--- 1695 ---- >! chrI AUGUSTUS internal 286071 286181 0.97 - 0 transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1699,1700 **** >! chrI AUGUSTUS internal 289644 289754 0.26 - 0 transcript_id "g40.t1"; gene_id "g40"; >! chrI AUGUSTUS initial 291279 291401 0.27 - 0 transcript_id "g40.t1"; gene_id "g40"; >--- 1699,1700 ---- >! chrI AUGUSTUS internal 289644 289754 0.29 - 0 transcript_id "g40.t1"; gene_id "g40"; >! chrI AUGUSTUS initial 291279 291401 0.28 - 0 transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1703 **** >! chrI AUGUSTUS intron 284982 286070 0.96 - . transcript_id "g40.t1"; gene_id "g40"; >--- 1703 ---- >! chrI AUGUSTUS intron 284982 286070 0.97 - . transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1707,1708 **** >! chrI AUGUSTUS intron 289589 289643 0.99 - . transcript_id "g40.t1"; gene_id "g40"; >! chrI AUGUSTUS intron 289755 291278 0.26 - . transcript_id "g40.t1"; gene_id "g40"; >--- 1707,1708 ---- >! chrI AUGUSTUS intron 289589 289643 1 - . transcript_id "g40.t1"; gene_id "g40"; >! chrI AUGUSTUS intron 289755 291278 0.28 - . transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1712 **** >! chrI AUGUSTUS CDS 286071 286181 0.96 - 0 transcript_id "g40.t1"; gene_id "g40"; >--- 1712 ---- >! chrI AUGUSTUS CDS 286071 286181 0.97 - 0 transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1716,1717 **** >! chrI AUGUSTUS CDS 289644 289754 0.26 - 0 transcript_id "g40.t1"; gene_id "g40"; >! chrI AUGUSTUS CDS 291279 291401 0.27 - 0 transcript_id "g40.t1"; gene_id "g40"; >--- 1716,1717 ---- >! chrI AUGUSTUS CDS 289644 289754 0.29 - 0 transcript_id "g40.t1"; gene_id "g40"; >! chrI AUGUSTUS CDS 291279 291401 0.28 - 0 transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1719 **** >! chrI AUGUSTUS 5'-UTR 291402 291476 0.25 - . transcript_id "g40.t1"; gene_id "g40"; >--- 1719 ---- >! chrI AUGUSTUS 5'-UTR 291402 291476 0.29 - . transcript_id "g40.t1"; gene_id "g40"; >*************** >*** 1738,1739 **** >! chrI AUGUSTUS gene 293167 297325 0.31 + . g41 >! chrI AUGUSTUS transcript 293167 297325 0.31 + . g41.t1 >--- 1738,1739 ---- >! chrI AUGUSTUS gene 293167 297325 0.38 + . g41 >! chrI AUGUSTUS transcript 293167 297325 0.38 + . g41.t1 >*************** >*** 1741 **** >! chrI AUGUSTUS 5'-UTR 293167 293217 0.43 + . transcript_id "g41.t1"; gene_id "g41"; >--- 1741 ---- >! chrI AUGUSTUS 5'-UTR 293167 293217 0.48 + . transcript_id "g41.t1"; gene_id "g41"; >*************** >*** 1743 **** >! chrI AUGUSTUS initial 293218 295212 1 + 0 transcript_id "g41.t1"; gene_id "g41"; >--- 1743 ---- >! chrI AUGUSTUS initial 293218 295212 0.99 + 0 transcript_id "g41.t1"; gene_id "g41"; >*************** >*** 1745,1746 **** >! chrI AUGUSTUS intron 295213 296230 1 + . transcript_id "g41.t1"; gene_id "g41"; >! chrI AUGUSTUS CDS 293218 295212 1 + 0 transcript_id "g41.t1"; gene_id "g41"; >--- 1745,1746 ---- >! chrI AUGUSTUS intron 295213 296230 0.99 + . transcript_id "g41.t1"; gene_id "g41"; >! chrI AUGUSTUS CDS 293218 295212 0.99 + 0 transcript_id "g41.t1"; gene_id "g41"; >*************** >*** 1749,1750 **** >! chrI AUGUSTUS 3'-UTR 296603 296656 0.82 + . transcript_id "g41.t1"; gene_id "g41"; >! chrI AUGUSTUS 3'-UTR 297066 297325 0.81 + . transcript_id "g41.t1"; gene_id "g41"; >--- 1749,1750 ---- >! chrI AUGUSTUS 3'-UTR 296603 296656 0.85 + . transcript_id "g41.t1"; gene_id "g41"; >! chrI AUGUSTUS 3'-UTR 297066 297325 0.88 + . transcript_id "g41.t1"; gene_id "g41"; >*************** >*** 1774,1775 **** >! chrI AUGUSTUS gene 300047 302761 0.11 + . g42 >! chrI AUGUSTUS transcript 300047 302761 0.11 + . g42.t1 >--- 1774,1775 ---- >! chrI AUGUSTUS gene 300047 302761 0.16 + . g42 >! chrI AUGUSTUS transcript 300047 302761 0.16 + . g42.t1 >*************** >*** 1777 **** >! chrI AUGUSTUS 5'-UTR 300047 300113 0.21 + . transcript_id "g42.t1"; gene_id "g42"; >--- 1777 ---- >! chrI AUGUSTUS 5'-UTR 300047 300113 0.29 + . transcript_id "g42.t1"; gene_id "g42"; >*************** >*** 1781 **** >! chrI AUGUSTUS terminal 300721 302634 0.99 + 0 transcript_id "g42.t1"; gene_id "g42"; >--- 1781 ---- >! chrI AUGUSTUS terminal 300721 302634 1 + 0 transcript_id "g42.t1"; gene_id "g42"; >*************** >*** 1786 **** >! chrI AUGUSTUS CDS 300721 302634 0.99 + 0 transcript_id "g42.t1"; gene_id "g42"; >--- 1786 ---- >! chrI AUGUSTUS CDS 300721 302634 1 + 0 transcript_id "g42.t1"; gene_id "g42"; >*************** >*** 1788 **** >! chrI AUGUSTUS 3'-UTR 302635 302761 0.47 + . transcript_id "g42.t1"; gene_id "g42"; >--- 1788 ---- >! chrI AUGUSTUS 3'-UTR 302635 302761 0.55 + . transcript_id "g42.t1"; gene_id "g42"; >*************** >*** 1810,1811 **** >! chrI AUGUSTUS gene 302765 306816 0.16 - . g43 >! chrI AUGUSTUS transcript 302765 306816 0.16 - . g43.t1 >--- 1810,1811 ---- >! chrI AUGUSTUS gene 302765 306816 0.29 - . g43 >! chrI AUGUSTUS transcript 302765 306816 0.29 - . g43.t1 >*************** >*** 1813 **** >! chrI AUGUSTUS 3'-UTR 302765 302798 0.79 - . transcript_id "g43.t1"; gene_id "g43"; >--- 1813 ---- >! chrI AUGUSTUS 3'-UTR 302765 302798 0.89 - . transcript_id "g43.t1"; gene_id "g43"; >*************** >*** 1818,1820 **** >! chrI AUGUSTUS internal 304249 304394 0.63 - 1 transcript_id "g43.t1"; gene_id "g43"; >! chrI AUGUSTUS internal 304763 304845 0.38 - 0 transcript_id "g43.t1"; gene_id "g43"; >! chrI AUGUSTUS internal 304900 305580 1 - 0 transcript_id "g43.t1"; gene_id "g43"; >--- 1818,1820 ---- >! chrI AUGUSTUS internal 304249 304394 0.69 - 1 transcript_id "g43.t1"; gene_id "g43"; >! chrI AUGUSTUS internal 304763 304845 0.39 - 0 transcript_id "g43.t1"; gene_id "g43"; >! chrI AUGUSTUS internal 304900 305580 0.99 - 0 transcript_id "g43.t1"; gene_id "g43"; >*************** >*** 1828 **** >! chrI AUGUSTUS intron 304846 304899 0.98 - . transcript_id "g43.t1"; gene_id "g43"; >--- 1828 ---- >! chrI AUGUSTUS intron 304846 304899 0.99 - . transcript_id "g43.t1"; gene_id "g43"; >*************** >*** 1835,1837 **** >! chrI AUGUSTUS CDS 304249 304394 0.63 - 1 transcript_id "g43.t1"; gene_id "g43"; >! chrI AUGUSTUS CDS 304763 304845 0.38 - 0 transcript_id "g43.t1"; gene_id "g43"; >! chrI AUGUSTUS CDS 304900 305580 1 - 0 transcript_id "g43.t1"; gene_id "g43"; >--- 1835,1837 ---- >! chrI AUGUSTUS CDS 304249 304394 0.69 - 1 transcript_id "g43.t1"; gene_id "g43"; >! chrI AUGUSTUS CDS 304763 304845 0.39 - 0 transcript_id "g43.t1"; gene_id "g43"; >! chrI AUGUSTUS CDS 304900 305580 0.99 - 0 transcript_id "g43.t1"; gene_id "g43"; >*************** >*** 1842 **** >! chrI AUGUSTUS 5'-UTR 306788 306816 0.77 - . transcript_id "g43.t1"; gene_id "g43"; >--- 1842 ---- >! chrI AUGUSTUS 5'-UTR 306788 306816 0.79 - . transcript_id "g43.t1"; gene_id "g43"; >*************** >*** 1868,1869 **** >! chrI AUGUSTUS gene 307337 308860 0.19 + . g44 >! chrI AUGUSTUS transcript 307337 308860 0.19 + . g44.t1 >--- 1868,1869 ---- >! chrI AUGUSTUS gene 307337 308860 0.16 + . g44 >! chrI AUGUSTUS transcript 307337 308860 0.16 + . g44.t1 >*************** >*** 1871 **** >! chrI AUGUSTUS 5'-UTR 307337 307410 0.4 + . transcript_id "g44.t1"; gene_id "g44"; >--- 1871 ---- >! chrI AUGUSTUS 5'-UTR 307337 307410 0.38 + . transcript_id "g44.t1"; gene_id "g44"; >*************** >*** 1874,1875 **** >! chrI AUGUSTUS internal 307537 307891 0.98 + 1 transcript_id "g44.t1"; gene_id "g44"; >! chrI AUGUSTUS internal 307963 308542 1 + 0 transcript_id "g44.t1"; gene_id "g44"; >--- 1874,1875 ---- >! chrI AUGUSTUS internal 307537 307891 0.97 + 1 transcript_id "g44.t1"; gene_id "g44"; >! chrI AUGUSTUS internal 307963 308542 0.99 + 0 transcript_id "g44.t1"; gene_id "g44"; >*************** >*** 1881,1882 **** >! chrI AUGUSTUS CDS 307537 307891 0.98 + 1 transcript_id "g44.t1"; gene_id "g44"; >! chrI AUGUSTUS CDS 307963 308542 1 + 0 transcript_id "g44.t1"; gene_id "g44"; >--- 1881,1882 ---- >! chrI AUGUSTUS CDS 307537 307891 0.97 + 1 transcript_id "g44.t1"; gene_id "g44"; >! chrI AUGUSTUS CDS 307963 308542 0.99 + 0 transcript_id "g44.t1"; gene_id "g44"; >*************** >*** 1885 **** >! chrI AUGUSTUS 3'-UTR 308784 308860 0.49 + . transcript_id "g44.t1"; gene_id "g44"; >--- 1885 ---- >! chrI AUGUSTUS 3'-UTR 308784 308860 0.46 + . transcript_id "g44.t1"; gene_id "g44"; >*************** >*** 1904,1905 **** >! chrI AUGUSTUS gene 308947 312101 0.08 + . g45 >! chrI AUGUSTUS transcript 308947 312101 0.08 + . g45.t1 >--- 1904,1905 ---- >! chrI AUGUSTUS gene 308947 312101 0.05 + . g45 >! chrI AUGUSTUS transcript 308947 312101 0.05 + . g45.t1 >*************** >*** 1907 **** >! chrI AUGUSTUS 5'-UTR 308947 308977 0.28 + . transcript_id "g45.t1"; gene_id "g45"; >--- 1907 ---- >! chrI AUGUSTUS 5'-UTR 308947 308977 0.32 + . transcript_id "g45.t1"; gene_id "g45"; >*************** >*** 1909,1910 **** >! chrI AUGUSTUS initial 308978 309210 0.92 + 0 transcript_id "g45.t1"; gene_id "g45"; >! chrI AUGUSTUS internal 309518 309677 0.91 + 1 transcript_id "g45.t1"; gene_id "g45"; >--- 1909,1910 ---- >! chrI AUGUSTUS initial 308978 309210 0.91 + 0 transcript_id "g45.t1"; gene_id "g45"; >! chrI AUGUSTUS internal 309518 309677 0.92 + 1 transcript_id "g45.t1"; gene_id "g45"; >*************** >*** 1914 **** >! chrI AUGUSTUS terminal 311843 312046 0.99 + 0 transcript_id "g45.t1"; gene_id "g45"; >--- 1914 ---- >! chrI AUGUSTUS terminal 311843 312046 0.96 + 0 transcript_id "g45.t1"; gene_id "g45"; >*************** >*** 1920,1921 **** >! chrI AUGUSTUS CDS 308978 309210 0.92 + 0 transcript_id "g45.t1"; gene_id "g45"; >! chrI AUGUSTUS CDS 309518 309677 0.91 + 1 transcript_id "g45.t1"; gene_id "g45"; >--- 1920,1921 ---- >! chrI AUGUSTUS CDS 308978 309210 0.91 + 0 transcript_id "g45.t1"; gene_id "g45"; >! chrI AUGUSTUS CDS 309518 309677 0.92 + 1 transcript_id "g45.t1"; gene_id "g45"; >*************** >*** 1925 **** >! chrI AUGUSTUS CDS 311843 312046 0.99 + 0 transcript_id "g45.t1"; gene_id "g45"; >--- 1925 ---- >! chrI AUGUSTUS CDS 311843 312046 0.96 + 0 transcript_id "g45.t1"; gene_id "g45"; >*************** >*** 1927 **** >! chrI AUGUSTUS 3'-UTR 312047 312101 0.34 + . transcript_id "g45.t1"; gene_id "g45"; >--- 1927 ---- >! chrI AUGUSTUS 3'-UTR 312047 312101 0.19 + . transcript_id "g45.t1"; gene_id "g45"; >*************** >*** 1946,1947 **** >! chrI AUGUSTUS gene 312457 312986 0.26 + . g46 >! chrI AUGUSTUS transcript 312457 312986 0.26 + . g46.t1 >--- 1946,1947 ---- >! chrI AUGUSTUS gene 312457 312986 0.29 + . g46 >! chrI AUGUSTUS transcript 312457 312986 0.29 + . g46.t1 >*************** >*** 1951 **** >! chrI AUGUSTUS initial 312511 312699 0.98 + 0 transcript_id "g46.t1"; gene_id "g46"; >--- 1951 ---- >! chrI AUGUSTUS initial 312511 312699 0.96 + 0 transcript_id "g46.t1"; gene_id "g46"; >*************** >*** 1953,1954 **** >! chrI AUGUSTUS intron 312700 312750 0.99 + . transcript_id "g46.t1"; gene_id "g46"; >! chrI AUGUSTUS CDS 312511 312699 0.98 + 0 transcript_id "g46.t1"; gene_id "g46"; >--- 1953,1954 ---- >! chrI AUGUSTUS intron 312700 312750 1 + . transcript_id "g46.t1"; gene_id "g46"; >! chrI AUGUSTUS CDS 312511 312699 0.96 + 0 transcript_id "g46.t1"; gene_id "g46"; >*************** >*** 1957 **** >! chrI AUGUSTUS 3'-UTR 312898 312986 0.77 + . transcript_id "g46.t1"; gene_id "g46"; >--- 1957 ---- >! chrI AUGUSTUS 3'-UTR 312898 312986 0.84 + . transcript_id "g46.t1"; gene_id "g46"; >*************** >*** 1972,1973 **** >! chrI AUGUSTUS gene 313207 315994 0.09 + . g47 >! chrI AUGUSTUS transcript 313207 315994 0.09 + . g47.t1 >--- 1972,1973 ---- >! chrI AUGUSTUS gene 313207 315994 0.15 + . g47 >! chrI AUGUSTUS transcript 313207 315994 0.15 + . g47.t1 >*************** >*** 1975 **** >! chrI AUGUSTUS 5'-UTR 313207 313311 0.17 + . transcript_id "g47.t1"; gene_id "g47"; >--- 1975 ---- >! chrI AUGUSTUS 5'-UTR 313207 313311 0.27 + . transcript_id "g47.t1"; gene_id "g47"; >*************** >*** 1977,1978 **** >! chrI AUGUSTUS initial 313312 313321 0.99 + 0 transcript_id "g47.t1"; gene_id "g47"; >! chrI AUGUSTUS internal 313376 313464 0.97 + 2 transcript_id "g47.t1"; gene_id "g47"; >--- 1977,1978 ---- >! chrI AUGUSTUS initial 313312 313321 1 + 0 transcript_id "g47.t1"; gene_id "g47"; >! chrI AUGUSTUS internal 313376 313464 1 + 2 transcript_id "g47.t1"; gene_id "g47"; >*************** >*** 1983 **** >! chrI AUGUSTUS intron 313322 313375 0.97 + . transcript_id "g47.t1"; gene_id "g47"; >--- 1983 ---- >! chrI AUGUSTUS intron 313322 313375 1 + . transcript_id "g47.t1"; gene_id "g47"; >*************** >*** 1986 **** >! chrI AUGUSTUS intron 314163 314996 0.97 + . transcript_id "g47.t1"; gene_id "g47"; >--- 1986 ---- >! chrI AUGUSTUS intron 314163 314996 0.98 + . transcript_id "g47.t1"; gene_id "g47"; >*************** >*** 1988,1989 **** >! chrI AUGUSTUS CDS 313312 313321 0.99 + 0 transcript_id "g47.t1"; gene_id "g47"; >! chrI AUGUSTUS CDS 313376 313464 0.97 + 2 transcript_id "g47.t1"; gene_id "g47"; >--- 1988,1989 ---- >! chrI AUGUSTUS CDS 313312 313321 1 + 0 transcript_id "g47.t1"; gene_id "g47"; >! chrI AUGUSTUS CDS 313376 313464 1 + 2 transcript_id "g47.t1"; gene_id "g47"; >*************** >*** 1995 **** >! chrI AUGUSTUS 3'-UTR 315762 315994 0.6 + . transcript_id "g47.t1"; gene_id "g47"; >--- 1995 ---- >! chrI AUGUSTUS 3'-UTR 315762 315994 0.53 + . transcript_id "g47.t1"; gene_id "g47"; >*************** >*** 2014,2015 **** >! chrI AUGUSTUS gene 316277 318304 0.74 + . g48 >! chrI AUGUSTUS transcript 316277 318304 0.74 + . g48.t1 >--- 2014,2015 ---- >! chrI AUGUSTUS gene 316277 318304 0.87 + . g48 >! chrI AUGUSTUS transcript 316277 318304 0.87 + . g48.t1 >*************** >*** 2017 **** >! chrI AUGUSTUS 5'-UTR 316277 316309 0.81 + . transcript_id "g48.t1"; gene_id "g48"; >--- 2017 ---- >! chrI AUGUSTUS 5'-UTR 316277 316309 0.91 + . transcript_id "g48.t1"; gene_id "g48"; >*************** >*** 2034 **** >! chrI AUGUSTUS 3'-UTR 317943 318304 0.9 + . transcript_id "g48.t1"; gene_id "g48"; >--- 2034 ---- >! chrI AUGUSTUS 3'-UTR 317943 318304 0.95 + . transcript_id "g48.t1"; gene_id "g48"; >*************** >*** 2054,2055 **** >! chrI AUGUSTUS gene 318326 321846 0.68 - . g49 >! chrI AUGUSTUS transcript 318326 321846 0.68 - . g49.t1 >--- 2054,2055 ---- >! chrI AUGUSTUS gene 318326 321846 0.56 - . g49 >! chrI AUGUSTUS transcript 318326 321846 0.56 - . g49.t1 >*************** >*** 2057 **** >! chrI AUGUSTUS 3'-UTR 318326 318427 0.93 - . transcript_id "g49.t1"; gene_id "g49"; >--- 2057 ---- >! chrI AUGUSTUS 3'-UTR 318326 318427 0.88 - . transcript_id "g49.t1"; gene_id "g49"; >*************** >*** 2064 **** >! chrI AUGUSTUS internal 321625 321681 0.99 - 2 transcript_id "g49.t1"; gene_id "g49"; >--- 2064 ---- >! chrI AUGUSTUS internal 321625 321681 0.98 - 2 transcript_id "g49.t1"; gene_id "g49"; >*************** >*** 2070 **** >! chrI AUGUSTUS intron 321555 321624 0.99 - . transcript_id "g49.t1"; gene_id "g49"; >--- 2070 ---- >! chrI AUGUSTUS intron 321555 321624 0.98 - . transcript_id "g49.t1"; gene_id "g49"; >*************** >*** 2077 **** >! chrI AUGUSTUS CDS 321625 321681 0.99 - 2 transcript_id "g49.t1"; gene_id "g49"; >--- 2077 ---- >! chrI AUGUSTUS CDS 321625 321681 0.98 - 2 transcript_id "g49.t1"; gene_id "g49"; >*************** >*** 2080 **** >! chrI AUGUSTUS 5'-UTR 321812 321846 0.74 - . transcript_id "g49.t1"; gene_id "g49"; >--- 2080 ---- >! chrI AUGUSTUS 5'-UTR 321812 321846 0.67 - . transcript_id "g49.t1"; gene_id "g49"; >*************** >*** 2103,2104 **** >! chrI AUGUSTUS gene 322019 322596 0.1 - . g50 >! chrI AUGUSTUS transcript 322019 322596 0.1 - . g50.t1 >--- 2103,2104 ---- >! chrI AUGUSTUS gene 322019 322596 0.06 - . g50 >! chrI AUGUSTUS transcript 322019 322596 0.06 - . g50.t1 >*************** >*** 2106 **** >! chrI AUGUSTUS 3'-UTR 322019 322076 0.39 - . transcript_id "g50.t1"; gene_id "g50"; >--- 2106 ---- >! chrI AUGUSTUS 3'-UTR 322019 322076 0.32 - . transcript_id "g50.t1"; gene_id "g50"; >*************** >*** 2110 **** >! chrI AUGUSTUS initial 322449 322552 0.64 - 0 transcript_id "g50.t1"; gene_id "g50"; >--- 2110 ---- >! chrI AUGUSTUS initial 322449 322552 0.61 - 0 transcript_id "g50.t1"; gene_id "g50"; >*************** >*** 2115 **** >! chrI AUGUSTUS CDS 322449 322552 0.64 - 0 transcript_id "g50.t1"; gene_id "g50"; >--- 2115 ---- >! chrI AUGUSTUS CDS 322449 322552 0.61 - 0 transcript_id "g50.t1"; gene_id "g50"; >*************** >*** 2117 **** >! chrI AUGUSTUS 5'-UTR 322553 322596 0.32 - . transcript_id "g50.t1"; gene_id "g50"; >--- 2117 ---- >! chrI AUGUSTUS 5'-UTR 322553 322596 0.22 - . transcript_id "g50.t1"; gene_id "g50"; >*************** >*** 2133,2134 **** >! chrI AUGUSTUS gene 324048 327306 0.48 - . g51 >! chrI AUGUSTUS transcript 324048 327306 0.48 - . g51.t1 >--- 2133,2134 ---- >! chrI AUGUSTUS gene 324048 327306 0.4 - . g51 >! chrI AUGUSTUS transcript 324048 327306 0.4 - . g51.t1 >*************** >*** 2136 **** >! chrI AUGUSTUS 3'-UTR 324048 324082 0.98 - . transcript_id "g51.t1"; gene_id "g51"; >--- 2136 ---- >! chrI AUGUSTUS 3'-UTR 324048 324082 0.96 - . transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2138 **** >! chrI AUGUSTUS terminal 324083 324269 0.98 - 1 transcript_id "g51.t1"; gene_id "g51"; >--- 2138 ---- >! chrI AUGUSTUS terminal 324083 324269 0.96 - 1 transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2140 **** >! chrI AUGUSTUS internal 325336 325804 0.87 - 1 transcript_id "g51.t1"; gene_id "g51"; >--- 2140 ---- >! chrI AUGUSTUS internal 325336 325804 0.91 - 1 transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2142 **** >! chrI AUGUSTUS internal 326227 326586 0.99 - 0 transcript_id "g51.t1"; gene_id "g51"; >--- 2142 ---- >! chrI AUGUSTUS internal 326227 326586 1 - 0 transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2146 **** >! chrI AUGUSTUS intron 324464 325335 0.8 - . transcript_id "g51.t1"; gene_id "g51"; >--- 2146 ---- >! chrI AUGUSTUS intron 324464 325335 0.87 - . transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2149 **** >! chrI AUGUSTUS intron 326587 326851 0.98 - . transcript_id "g51.t1"; gene_id "g51"; >--- 2149 ---- >! chrI AUGUSTUS intron 326587 326851 0.99 - . transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2151 **** >! chrI AUGUSTUS CDS 324083 324269 0.98 - 1 transcript_id "g51.t1"; gene_id "g51"; >--- 2151 ---- >! chrI AUGUSTUS CDS 324083 324269 0.96 - 1 transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2153 **** >! chrI AUGUSTUS CDS 325336 325804 0.87 - 1 transcript_id "g51.t1"; gene_id "g51"; >--- 2153 ---- >! chrI AUGUSTUS CDS 325336 325804 0.91 - 1 transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2155 **** >! chrI AUGUSTUS CDS 326227 326586 0.99 - 0 transcript_id "g51.t1"; gene_id "g51"; >--- 2155 ---- >! chrI AUGUSTUS CDS 326227 326586 1 - 0 transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2159 **** >! chrI AUGUSTUS 5'-UTR 327254 327306 0.62 - . transcript_id "g51.t1"; gene_id "g51"; >--- 2159 ---- >! chrI AUGUSTUS 5'-UTR 327254 327306 0.48 - . transcript_id "g51.t1"; gene_id "g51"; >*************** >*** 2181,2182 **** >! chrI AUGUSTUS gene 327717 330220 0.27 + . g52 >! chrI AUGUSTUS transcript 327717 330220 0.27 + . g52.t1 >--- 2181,2182 ---- >! chrI AUGUSTUS gene 327717 330220 0.28 + . g52 >! chrI AUGUSTUS transcript 327717 330220 0.28 + . g52.t1 >*************** >*** 2184 **** >! chrI AUGUSTUS 5'-UTR 327717 327890 0.35 + . transcript_id "g52.t1"; gene_id "g52"; >--- 2184 ---- >! chrI AUGUSTUS 5'-UTR 327717 327890 0.36 + . transcript_id "g52.t1"; gene_id "g52"; >*************** >*** 2186,2193 **** >! chrI AUGUSTUS initial 327891 327921 0.47 + 0 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS internal 328935 329053 0.7 + 2 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS terminal 329922 330155 0.9 + 0 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS intron 327922 328934 0.89 + . transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS intron 329054 329921 0.7 + . transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS CDS 327891 327921 0.47 + 0 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS CDS 328935 329053 0.7 + 2 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS CDS 329922 330155 0.9 + 0 transcript_id "g52.t1"; gene_id "g52"; >--- 2186,2193 ---- >! chrI AUGUSTUS initial 327891 327921 0.39 + 0 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS internal 328935 329053 0.67 + 2 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS terminal 329922 330155 0.93 + 0 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS intron 327922 328934 0.82 + . transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS intron 329054 329921 0.67 + . transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS CDS 327891 327921 0.39 + 0 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS CDS 328935 329053 0.67 + 2 transcript_id "g52.t1"; gene_id "g52"; >! chrI AUGUSTUS CDS 329922 330155 0.93 + 0 transcript_id "g52.t1"; gene_id "g52"; >*************** >*** 2195 **** >! chrI AUGUSTUS 3'-UTR 330156 330220 0.93 + . transcript_id "g52.t1"; gene_id "g52"; >--- 2195 ---- >! chrI AUGUSTUS 3'-UTR 330156 330220 0.91 + . transcript_id "g52.t1"; gene_id "g52"; >*************** >*** 2211,2212 **** >! chrI AUGUSTUS gene 330895 332646 0.27 - . g53 >! chrI AUGUSTUS transcript 330895 332646 0.27 - . g53.t1 >--- 2211,2212 ---- >! chrI AUGUSTUS gene 330895 332646 0.3 - . g53 >! chrI AUGUSTUS transcript 330895 332646 0.3 - . g53.t1 >*************** >*** 2214 **** >! chrI AUGUSTUS 3'-UTR 330895 330962 0.69 - . transcript_id "g53.t1"; gene_id "g53"; >--- 2214 ---- >! chrI AUGUSTUS 3'-UTR 330895 330962 0.73 - . transcript_id "g53.t1"; gene_id "g53"; >*************** >*** 2216,2217 **** >! chrI AUGUSTUS terminal 330963 331289 0.97 - 0 transcript_id "g53.t1"; gene_id "g53"; >! chrI AUGUSTUS internal 331339 331464 1 - 0 transcript_id "g53.t1"; gene_id "g53"; >--- 2216,2217 ---- >! chrI AUGUSTUS terminal 330963 331289 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; >! chrI AUGUSTUS internal 331339 331464 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; >*************** >*** 2219,2220 **** >! chrI AUGUSTUS initial 332559 332601 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; >! chrI AUGUSTUS intron 331290 331338 0.97 - . transcript_id "g53.t1"; gene_id "g53"; >--- 2219,2220 ---- >! chrI AUGUSTUS initial 332559 332601 0.98 - 0 transcript_id "g53.t1"; gene_id "g53"; >! chrI AUGUSTUS intron 331290 331338 0.98 - . transcript_id "g53.t1"; gene_id "g53"; >*************** >*** 2222,2224 **** >! chrI AUGUSTUS intron 331698 332558 1 - . transcript_id "g53.t1"; gene_id "g53"; >! chrI AUGUSTUS CDS 330963 331289 0.97 - 0 transcript_id "g53.t1"; gene_id "g53"; >! chrI AUGUSTUS CDS 331339 331464 1 - 0 transcript_id "g53.t1"; gene_id "g53"; >--- 2222,2224 ---- >! chrI AUGUSTUS intron 331698 332558 0.99 - . transcript_id "g53.t1"; gene_id "g53"; >! chrI AUGUSTUS CDS 330963 331289 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; >! chrI AUGUSTUS CDS 331339 331464 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; >*************** >*** 2226 **** >! chrI AUGUSTUS CDS 332559 332601 0.99 - 0 transcript_id "g53.t1"; gene_id "g53"; >--- 2226 ---- >! chrI AUGUSTUS CDS 332559 332601 0.98 - 0 transcript_id "g53.t1"; gene_id "g53"; >*************** >*** 2228 **** >! chrI AUGUSTUS 5'-UTR 332602 332646 0.39 - . transcript_id "g53.t1"; gene_id "g53"; >--- 2228 ---- >! chrI AUGUSTUS 5'-UTR 332602 332646 0.43 - . transcript_id "g53.t1"; gene_id "g53"; >*************** >*** 2245,2246 **** >! chrI AUGUSTUS gene 333227 338675 0.11 + . g54 >! chrI AUGUSTUS transcript 333227 338675 0.11 + . g54.t1 >--- 2245,2246 ---- >! chrI AUGUSTUS gene 333227 338675 0.12 + . g54 >! chrI AUGUSTUS transcript 333227 338675 0.12 + . g54.t1 >*************** >*** 2250,2253 **** >! chrI AUGUSTUS initial 333442 333486 0.72 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS internal 333767 333847 0.89 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS internal 333899 333994 0.87 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS internal 334161 334293 0.9 + 0 transcript_id "g54.t1"; gene_id "g54"; >--- 2250,2253 ---- >! chrI AUGUSTUS initial 333442 333486 0.76 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS internal 333767 333847 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS internal 333899 333994 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS internal 334161 334293 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; >*************** >*** 2255 **** >! chrI AUGUSTUS internal 335420 335766 1 + 0 transcript_id "g54.t1"; gene_id "g54"; >--- 2255 ---- >! chrI AUGUSTUS internal 335420 335766 0.98 + 0 transcript_id "g54.t1"; gene_id "g54"; >*************** >*** 2257,2259 **** >! chrI AUGUSTUS terminal 338365 338617 0.72 + 1 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS intron 333487 333766 0.93 + . transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS intron 333848 333898 0.89 + . transcript_id "g54.t1"; gene_id "g54"; >--- 2257,2259 ---- >! chrI AUGUSTUS terminal 338365 338617 0.73 + 1 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS intron 333487 333766 0.97 + . transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS intron 333848 333898 0.86 + . transcript_id "g54.t1"; gene_id "g54"; >*************** >*** 2261 **** >! chrI AUGUSTUS intron 334294 334640 0.9 + . transcript_id "g54.t1"; gene_id "g54"; >--- 2261 ---- >! chrI AUGUSTUS intron 334294 334640 0.86 + . transcript_id "g54.t1"; gene_id "g54"; >*************** >*** 2263 **** >! chrI AUGUSTUS intron 335767 337183 1 + . transcript_id "g54.t1"; gene_id "g54"; >--- 2263 ---- >! chrI AUGUSTUS intron 335767 337183 0.98 + . transcript_id "g54.t1"; gene_id "g54"; >*************** >*** 2265,2268 **** >! chrI AUGUSTUS CDS 333442 333486 0.72 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS CDS 333767 333847 0.89 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS CDS 333899 333994 0.87 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS CDS 334161 334293 0.9 + 0 transcript_id "g54.t1"; gene_id "g54"; >--- 2265,2268 ---- >! chrI AUGUSTUS CDS 333442 333486 0.76 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS CDS 333767 333847 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS CDS 333899 333994 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; >! chrI AUGUSTUS CDS 334161 334293 0.86 + 0 transcript_id "g54.t1"; gene_id "g54"; >*************** >*** 2270 **** >! chrI AUGUSTUS CDS 335420 335766 1 + 0 transcript_id "g54.t1"; gene_id "g54"; >--- 2270 ---- >! chrI AUGUSTUS CDS 335420 335766 0.98 + 0 transcript_id "g54.t1"; gene_id "g54"; >*************** >*** 2272 **** >! chrI AUGUSTUS CDS 338365 338617 0.72 + 1 transcript_id "g54.t1"; gene_id "g54"; >--- 2272 ---- >! chrI AUGUSTUS CDS 338365 338617 0.73 + 1 transcript_id "g54.t1"; gene_id "g54"; >*************** >*** 2274 **** >! chrI AUGUSTUS 3'-UTR 338618 338675 0.6 + . transcript_id "g54.t1"; gene_id "g54"; >--- 2274 ---- >! chrI AUGUSTUS 3'-UTR 338618 338675 0.69 + . transcript_id "g54.t1"; gene_id "g54"; >*************** >*** 2294,2295 **** >! chrI AUGUSTUS gene 342357 350529 0.07 + . g55 >! chrI AUGUSTUS transcript 342357 350529 0.07 + . g55.t1 >--- 2294,2295 ---- >! chrI AUGUSTUS gene 342357 350529 0.09 + . g55 >! chrI AUGUSTUS transcript 342357 350529 0.09 + . g55.t1 >*************** >*** 2297 **** >! chrI AUGUSTUS 5'-UTR 342357 342383 0.93 + . transcript_id "g55.t1"; gene_id "g55"; >--- 2297 ---- >! chrI AUGUSTUS 5'-UTR 342357 342383 0.92 + . transcript_id "g55.t1"; gene_id "g55"; >*************** >*** 2299,2304 **** >! chrI AUGUSTUS initial 342384 342408 0.99 + 0 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 342521 342706 0.94 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 345099 345224 0.83 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 345269 345385 0.8 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 346369 346470 0.93 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 346765 346892 0.84 + 2 transcript_id "g55.t1"; gene_id "g55"; >--- 2299,2304 ---- >! chrI AUGUSTUS initial 342384 342408 1 + 0 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 342521 342706 0.99 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 345099 345224 0.71 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 345269 345385 0.72 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 346369 346470 0.87 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 346765 346892 0.91 + 2 transcript_id "g55.t1"; gene_id "g55"; >*************** >*** 2306,2317 **** >! chrI AUGUSTUS internal 347792 347946 1 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 347993 348305 0.85 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 349050 349652 0.9 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS terminal 350067 350469 0.99 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 342409 342520 0.95 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 342707 345098 0.67 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 345225 345268 0.82 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 345386 346368 0.8 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 346471 346764 0.46 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 346893 347478 0.88 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 347745 347791 1 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 347947 347992 1 + . transcript_id "g55.t1"; gene_id "g55"; >--- 2306,2317 ---- >! chrI AUGUSTUS internal 347792 347946 0.98 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 347993 348305 0.83 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS internal 349050 349652 0.95 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS terminal 350067 350469 1 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 342409 342520 0.99 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 342707 345098 0.65 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 345225 345268 0.72 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 345386 346368 0.72 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 346471 346764 0.53 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 346893 347478 0.92 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 347745 347791 0.98 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS intron 347947 347992 0.98 + . transcript_id "g55.t1"; gene_id "g55"; >*************** >*** 2319,2325 **** >! chrI AUGUSTUS intron 349653 350066 0.99 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 342384 342408 0.99 + 0 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 342521 342706 0.94 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 345099 345224 0.83 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 345269 345385 0.8 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 346369 346470 0.93 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 346765 346892 0.84 + 2 transcript_id "g55.t1"; gene_id "g55"; >--- 2319,2325 ---- >! chrI AUGUSTUS intron 349653 350066 0.98 + . transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 342384 342408 1 + 0 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 342521 342706 0.99 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 345099 345224 0.71 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 345269 345385 0.72 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 346369 346470 0.87 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 346765 346892 0.91 + 2 transcript_id "g55.t1"; gene_id "g55"; >*************** >*** 2327,2330 **** >! chrI AUGUSTUS CDS 347792 347946 1 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 347993 348305 0.85 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 349050 349652 0.9 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 350067 350469 0.99 + 1 transcript_id "g55.t1"; gene_id "g55"; >--- 2327,2330 ---- >! chrI AUGUSTUS CDS 347792 347946 0.98 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 347993 348305 0.83 + 2 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 349050 349652 0.95 + 1 transcript_id "g55.t1"; gene_id "g55"; >! chrI AUGUSTUS CDS 350067 350469 1 + 1 transcript_id "g55.t1"; gene_id "g55"; >*************** >*** 2332 **** >! chrI AUGUSTUS 3'-UTR 350470 350529 0.55 + . transcript_id "g55.t1"; gene_id "g55"; >--- 2332 ---- >! chrI AUGUSTUS 3'-UTR 350470 350529 0.61 + . transcript_id "g55.t1"; gene_id "g55"; >*************** >*** 2355,2356 **** >! chrI AUGUSTUS gene 357621 372979 0.06 + . g56 >! chrI AUGUSTUS transcript 357621 372979 0.06 + . g56.t1 >--- 2355,2356 ---- >! chrI AUGUSTUS gene 357621 372979 0.09 + . g56 >! chrI AUGUSTUS transcript 357621 372979 0.09 + . g56.t1 >*************** >*** 2358 **** >! chrI AUGUSTUS 5'-UTR 357621 357735 0.53 + . transcript_id "g56.t1"; gene_id "g56"; >--- 2358 ---- >! chrI AUGUSTUS 5'-UTR 357621 357735 0.56 + . transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2360,2361 **** >! chrI AUGUSTUS initial 357736 357892 0.28 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 358419 358681 0.89 + 2 transcript_id "g56.t1"; gene_id "g56"; >--- 2360,2361 ---- >! chrI AUGUSTUS initial 357736 357892 0.3 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 358419 358681 0.91 + 2 transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2365 **** >! chrI AUGUSTUS internal 361567 361790 0.96 + 0 transcript_id "g56.t1"; gene_id "g56"; >--- 2365 ---- >! chrI AUGUSTUS internal 361567 361790 0.97 + 0 transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2368,2375 **** >! chrI AUGUSTUS internal 364257 364403 0.99 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 364455 364561 0.99 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 364616 364687 0.69 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 365102 365215 0.97 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 368921 369059 0.97 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 369105 369263 0.93 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 369383 369473 0.98 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 369522 369652 0.98 + 2 transcript_id "g56.t1"; gene_id "g56"; >--- 2368,2375 ---- >! chrI AUGUSTUS internal 364257 364403 1 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 364455 364561 1 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 364616 364687 0.65 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 365102 365215 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 368921 369059 1 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 369105 369263 0.98 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 369383 369473 1 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS internal 369522 369652 1 + 2 transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2378,2381 **** >! chrI AUGUSTUS internal 371248 371418 1 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS terminal 372675 372930 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 357893 358418 0.27 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 358682 358893 0.89 + . transcript_id "g56.t1"; gene_id "g56"; >--- 2378,2381 ---- >! chrI AUGUSTUS internal 371248 371418 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS terminal 372675 372930 1 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 357893 358418 0.3 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 358682 358893 0.91 + . transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2384 **** >! chrI AUGUSTUS intron 360340 361566 0.96 + . transcript_id "g56.t1"; gene_id "g56"; >--- 2384 ---- >! chrI AUGUSTUS intron 360340 361566 0.97 + . transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2386 **** >! chrI AUGUSTUS intron 362991 363509 0.83 + . transcript_id "g56.t1"; gene_id "g56"; >--- 2386 ---- >! chrI AUGUSTUS intron 362991 363509 0.79 + . transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2388,2395 **** >! chrI AUGUSTUS intron 364404 364454 0.99 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 364562 364615 0.7 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 364688 365101 0.67 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 365216 368920 0.97 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 369060 369104 0.97 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 369264 369382 0.96 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 369474 369521 0.98 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 369653 369971 0.98 + . transcript_id "g56.t1"; gene_id "g56"; >--- 2388,2395 ---- >! chrI AUGUSTUS intron 364404 364454 1 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 364562 364615 0.65 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 364688 365101 0.64 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 365216 368920 0.98 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 369060 369104 1 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 369264 369382 0.98 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 369474 369521 1 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 369653 369971 1 + . transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2397,2400 **** >! chrI AUGUSTUS intron 371197 371247 1 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 371419 372674 0.98 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 357736 357892 0.28 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 358419 358681 0.89 + 2 transcript_id "g56.t1"; gene_id "g56"; >--- 2397,2400 ---- >! chrI AUGUSTUS intron 371197 371247 0.99 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS intron 371419 372674 0.99 + . transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 357736 357892 0.3 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 358419 358681 0.91 + 2 transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2404 **** >! chrI AUGUSTUS CDS 361567 361790 0.96 + 0 transcript_id "g56.t1"; gene_id "g56"; >--- 2404 ---- >! chrI AUGUSTUS CDS 361567 361790 0.97 + 0 transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2407,2414 **** >! chrI AUGUSTUS CDS 364257 364403 0.99 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 364455 364561 0.99 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 364616 364687 0.69 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 365102 365215 0.97 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 368921 369059 0.97 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 369105 369263 0.93 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 369383 369473 0.98 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 369522 369652 0.98 + 2 transcript_id "g56.t1"; gene_id "g56"; >--- 2407,2414 ---- >! chrI AUGUSTUS CDS 364257 364403 1 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 364455 364561 1 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 364616 364687 0.65 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 365102 365215 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 368921 369059 1 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 369105 369263 0.98 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 369383 369473 1 + 0 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 369522 369652 1 + 2 transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2417,2418 **** >! chrI AUGUSTUS CDS 371248 371418 1 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 372675 372930 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; >--- 2417,2418 ---- >! chrI AUGUSTUS CDS 371248 371418 0.98 + 1 transcript_id "g56.t1"; gene_id "g56"; >! chrI AUGUSTUS CDS 372675 372930 1 + 1 transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2420 **** >! chrI AUGUSTUS 3'-UTR 372931 372979 0.49 + . transcript_id "g56.t1"; gene_id "g56"; >--- 2420 ---- >! chrI AUGUSTUS 3'-UTR 372931 372979 0.55 + . transcript_id "g56.t1"; gene_id "g56"; >*************** >*** 2445,2446 **** >! chrI AUGUSTUS gene 375111 401510 0.16 - . g57 >! chrI AUGUSTUS transcript 375111 401510 0.16 - . g57.t1 >--- 2445,2446 ---- >! chrI AUGUSTUS gene 375111 401510 0.11 - . g57 >! chrI AUGUSTUS transcript 375111 401510 0.11 - . g57.t1 >*************** >*** 2448,2449 **** >! chrI AUGUSTUS 3'-UTR 375111 375481 0.38 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS 3'-UTR 377080 377089 0.52 - . transcript_id "g57.t1"; gene_id "g57"; >--- 2448,2449 ---- >! chrI AUGUSTUS 3'-UTR 375111 375481 0.43 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS 3'-UTR 377080 377089 0.51 - . transcript_id "g57.t1"; gene_id "g57"; >*************** >*** 2451,2456 **** >! chrI AUGUSTUS terminal 377090 377583 0.98 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 377691 377777 0.86 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 379390 379508 0.98 - 1 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 379560 379706 0.89 - 1 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 381014 381854 0.82 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 384597 384992 0.97 - 2 transcript_id "g57.t1"; gene_id "g57"; >--- 2451,2456 ---- >! chrI AUGUSTUS terminal 377090 377583 0.95 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 377691 377777 0.76 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 379390 379508 0.97 - 1 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 379560 379706 0.97 - 1 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 381014 381854 0.78 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 384597 384992 0.98 - 2 transcript_id "g57.t1"; gene_id "g57"; >*************** >*** 2458,2461 **** >! chrI AUGUSTUS internal 389884 389960 0.9 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 390885 391161 0.91 - 0 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 392473 392709 0.96 - 0 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 396105 396251 1 - 0 transcript_id "g57.t1"; gene_id "g57"; >--- 2458,2461 ---- >! chrI AUGUSTUS internal 389884 389960 0.92 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 390885 391161 0.92 - 0 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 392473 392709 0.93 - 0 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS internal 396105 396251 0.96 - 0 transcript_id "g57.t1"; gene_id "g57"; >*************** >*** 2470,2471 **** >! chrI AUGUSTUS intron 377584 377690 0.87 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS intron 377778 379389 0.88 - . transcript_id "g57.t1"; gene_id "g57"; >--- 2470,2471 ---- >! chrI AUGUSTUS intron 377584 377690 0.76 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS intron 377778 379389 0.79 - . transcript_id "g57.t1"; gene_id "g57"; >*************** >*** 2473,2474 **** >! chrI AUGUSTUS intron 379707 381013 0.83 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS intron 381855 384596 0.91 - . transcript_id "g57.t1"; gene_id "g57"; >--- 2473,2474 ---- >! chrI AUGUSTUS intron 379707 381013 0.8 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS intron 381855 384596 0.96 - . transcript_id "g57.t1"; gene_id "g57"; >*************** >*** 2477,2479 **** >! chrI AUGUSTUS intron 389961 390884 0.9 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS intron 391162 392472 0.96 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS intron 392710 396104 1 - . transcript_id "g57.t1"; gene_id "g57"; >--- 2477,2479 ---- >! chrI AUGUSTUS intron 389961 390884 0.92 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS intron 391162 392472 0.93 - . transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS intron 392710 396104 0.96 - . transcript_id "g57.t1"; gene_id "g57"; >*************** >*** 2488,2493 **** >! chrI AUGUSTUS CDS 377090 377583 0.98 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 377691 377777 0.86 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 379390 379508 0.98 - 1 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 379560 379706 0.89 - 1 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 381014 381854 0.82 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 384597 384992 0.97 - 2 transcript_id "g57.t1"; gene_id "g57"; >--- 2488,2493 ---- >! chrI AUGUSTUS CDS 377090 377583 0.95 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 377691 377777 0.76 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 379390 379508 0.97 - 1 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 379560 379706 0.97 - 1 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 381014 381854 0.78 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 384597 384992 0.98 - 2 transcript_id "g57.t1"; gene_id "g57"; >*************** >*** 2495,2498 **** >! chrI AUGUSTUS CDS 389884 389960 0.9 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 390885 391161 0.91 - 0 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 392473 392709 0.96 - 0 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 396105 396251 1 - 0 transcript_id "g57.t1"; gene_id "g57"; >--- 2495,2498 ---- >! chrI AUGUSTUS CDS 389884 389960 0.92 - 2 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 390885 391161 0.92 - 0 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 392473 392709 0.93 - 0 transcript_id "g57.t1"; gene_id "g57"; >! chrI AUGUSTUS CDS 396105 396251 0.96 - 0 transcript_id "g57.t1"; gene_id "g57"; >*************** >*** 2508 **** >! chrI AUGUSTUS 5'-UTR 401490 401510 0.73 - . transcript_id "g57.t1"; gene_id "g57"; >--- 2508 ---- >! chrI AUGUSTUS 5'-UTR 401490 401510 0.75 - . transcript_id "g57.t1"; gene_id "g57"; >*************** >*** 2539,2540 **** >! chrI AUGUSTUS gene 402191 409988 0.16 + . g58 >! chrI AUGUSTUS transcript 402191 409988 0.16 + . g58.t1 >--- 2539,2540 ---- >! chrI AUGUSTUS gene 402191 409988 0.2 + . g58 >! chrI AUGUSTUS transcript 402191 409988 0.2 + . g58.t1 >*************** >*** 2542 **** >! chrI AUGUSTUS 5'-UTR 402191 402235 0.55 + . transcript_id "g58.t1"; gene_id "g58"; >--- 2542 ---- >! chrI AUGUSTUS 5'-UTR 402191 402235 0.57 + . transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 2544 **** >! chrI AUGUSTUS initial 402236 402325 0.96 + 0 transcript_id "g58.t1"; gene_id "g58"; >--- 2544 ---- >! chrI AUGUSTUS initial 402236 402325 0.94 + 0 transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 2546,2547 **** >! chrI AUGUSTUS internal 403346 403439 0.99 + 2 transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS internal 404646 404970 0.98 + 1 transcript_id "g58.t1"; gene_id "g58"; >--- 2546,2547 ---- >! chrI AUGUSTUS internal 403346 403439 1 + 2 transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS internal 404646 404970 0.99 + 1 transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 2549,2550 **** >! chrI AUGUSTUS internal 407823 408077 0.99 + 1 transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS internal 408878 409021 0.52 + 1 transcript_id "g58.t1"; gene_id "g58"; >--- 2549,2550 ---- >! chrI AUGUSTUS internal 407823 408077 0.98 + 1 transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS internal 408878 409021 0.63 + 1 transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 2554 **** >! chrI AUGUSTUS intron 403440 404645 0.99 + . transcript_id "g58.t1"; gene_id "g58"; >--- 2554 ---- >! chrI AUGUSTUS intron 403440 404645 1 + . transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 2557,2559 **** >! chrI AUGUSTUS intron 408078 408877 0.52 + . transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS intron 409022 409282 0.61 + . transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS CDS 402236 402325 0.96 + 0 transcript_id "g58.t1"; gene_id "g58"; >--- 2557,2559 ---- >! chrI AUGUSTUS intron 408078 408877 0.63 + . transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS intron 409022 409282 0.69 + . transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS CDS 402236 402325 0.94 + 0 transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 2561,2562 **** >! chrI AUGUSTUS CDS 403346 403439 0.99 + 2 transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS CDS 404646 404970 0.98 + 1 transcript_id "g58.t1"; gene_id "g58"; >--- 2561,2562 ---- >! chrI AUGUSTUS CDS 403346 403439 1 + 2 transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS CDS 404646 404970 0.99 + 1 transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 2564,2565 **** >! chrI AUGUSTUS CDS 407823 408077 0.99 + 1 transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS CDS 408878 409021 0.52 + 1 transcript_id "g58.t1"; gene_id "g58"; >--- 2564,2565 ---- >! chrI AUGUSTUS CDS 407823 408077 0.98 + 1 transcript_id "g58.t1"; gene_id "g58"; >! chrI AUGUSTUS CDS 408878 409021 0.63 + 1 transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 2568 **** >! chrI AUGUSTUS 3'-UTR 409854 409988 0.58 + . transcript_id "g58.t1"; gene_id "g58"; >--- 2568 ---- >! chrI AUGUSTUS 3'-UTR 409854 409988 0.54 + . transcript_id "g58.t1"; gene_id "g58"; >*************** >*** 2594 **** >! chrI AUGUSTUS 5'-UTR 415091 415133 0.66 + . transcript_id "g59.t1"; gene_id "g59"; >--- 2594 ---- >! chrI AUGUSTUS 5'-UTR 415091 415133 0.7 + . transcript_id "g59.t1"; gene_id "g59"; >*************** >*** 2596,2598 **** >! chrI AUGUSTUS initial 415134 415280 0.9 + 0 transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS internal 415843 415950 0.76 + 0 transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS internal 417183 417575 0.85 + 0 transcript_id "g59.t1"; gene_id "g59"; >--- 2596,2598 ---- >! chrI AUGUSTUS initial 415134 415280 0.86 + 0 transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS internal 415843 415950 0.83 + 0 transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS internal 417183 417575 0.8 + 0 transcript_id "g59.t1"; gene_id "g59"; >*************** >*** 2600,2605 **** >! chrI AUGUSTUS intron 415281 415842 0.84 + . transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS intron 415951 417182 0.76 + . transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS intron 417576 418371 0.85 + . transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS CDS 415134 415280 0.9 + 0 transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS CDS 415843 415950 0.76 + 0 transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS CDS 417183 417575 0.85 + 0 transcript_id "g59.t1"; gene_id "g59"; >--- 2600,2605 ---- >! chrI AUGUSTUS intron 415281 415842 0.88 + . transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS intron 415951 417182 0.82 + . transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS intron 417576 418371 0.87 + . transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS CDS 415134 415280 0.86 + 0 transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS CDS 415843 415950 0.83 + 0 transcript_id "g59.t1"; gene_id "g59"; >! chrI AUGUSTUS CDS 417183 417575 0.8 + 0 transcript_id "g59.t1"; gene_id "g59"; >*************** >*** 2608 **** >! chrI AUGUSTUS 3'-UTR 418459 418516 0.78 + . transcript_id "g59.t1"; gene_id "g59"; >--- 2608 ---- >! chrI AUGUSTUS 3'-UTR 418459 418516 0.76 + . transcript_id "g59.t1"; gene_id "g59"; >*************** >*** 2626,2627 **** >! chrI AUGUSTUS gene 418562 420380 0.21 - . g60 >! chrI AUGUSTUS transcript 418562 420380 0.21 - . g60.t1 >--- 2626,2627 ---- >! chrI AUGUSTUS gene 418562 420380 0.29 - . g60 >! chrI AUGUSTUS transcript 418562 420380 0.29 - . g60.t1 >*************** >*** 2629 **** >! chrI AUGUSTUS 3'-UTR 418562 418597 0.49 - . transcript_id "g60.t1"; gene_id "g60"; >--- 2629 ---- >! chrI AUGUSTUS 3'-UTR 418562 418597 0.59 - . transcript_id "g60.t1"; gene_id "g60"; >*************** >*** 2640 **** >! chrI AUGUSTUS 5'-UTR 420348 420380 0.37 - . transcript_id "g60.t1"; gene_id "g60"; >--- 2640 ---- >! chrI AUGUSTUS 5'-UTR 420348 420380 0.45 - . transcript_id "g60.t1"; gene_id "g60"; >*************** >*** 2658,2659 **** >! chrI AUGUSTUS gene 420563 421740 0.43 - . g61 >! chrI AUGUSTUS transcript 420563 421740 0.43 - . g61.t1 >--- 2658,2659 ---- >! chrI AUGUSTUS gene 420563 421740 0.41 - . g61 >! chrI AUGUSTUS transcript 420563 421740 0.41 - . g61.t1 >*************** >*** 2661 **** >! chrI AUGUSTUS 3'-UTR 420563 420962 0.77 - . transcript_id "g61.t1"; gene_id "g61"; >--- 2661 ---- >! chrI AUGUSTUS 3'-UTR 420563 420962 0.74 - . transcript_id "g61.t1"; gene_id "g61"; >*************** >*** 2665 **** >! chrI AUGUSTUS initial 421665 421698 0.85 - 0 transcript_id "g61.t1"; gene_id "g61"; >--- 2665 ---- >! chrI AUGUSTUS initial 421665 421698 0.91 - 0 transcript_id "g61.t1"; gene_id "g61"; >*************** >*** 2667 **** >! chrI AUGUSTUS intron 421607 421664 0.96 - . transcript_id "g61.t1"; gene_id "g61"; >--- 2667 ---- >! chrI AUGUSTUS intron 421607 421664 1 - . transcript_id "g61.t1"; gene_id "g61"; >*************** >*** 2670 **** >! chrI AUGUSTUS CDS 421665 421698 0.85 - 0 transcript_id "g61.t1"; gene_id "g61"; >--- 2670 ---- >! chrI AUGUSTUS CDS 421665 421698 0.91 - 0 transcript_id "g61.t1"; gene_id "g61"; >*************** >*** 2672 **** >! chrI AUGUSTUS 5'-UTR 421699 421740 0.57 - . transcript_id "g61.t1"; gene_id "g61"; >--- 2672 ---- >! chrI AUGUSTUS 5'-UTR 421699 421740 0.54 - . transcript_id "g61.t1"; gene_id "g61"; >*************** >*** 2689,2690 **** >! chrI AUGUSTUS gene 422336 425140 0.51 - . g62 >! chrI AUGUSTUS transcript 422336 425140 0.51 - . g62.t1 >--- 2689,2690 ---- >! chrI AUGUSTUS gene 422336 425140 0.49 - . g62 >! chrI AUGUSTUS transcript 422336 425140 0.49 - . g62.t1 >*************** >*** 2692 **** >! chrI AUGUSTUS 3'-UTR 422336 422405 0.82 - . transcript_id "g62.t1"; gene_id "g62"; >--- 2692 ---- >! chrI AUGUSTUS 3'-UTR 422336 422405 0.79 - . transcript_id "g62.t1"; gene_id "g62"; >*************** >*** 2699 **** >! chrI AUGUSTUS initial 425009 425074 0.98 - 0 transcript_id "g62.t1"; gene_id "g62"; >--- 2699 ---- >! chrI AUGUSTUS initial 425009 425074 0.97 - 0 transcript_id "g62.t1"; gene_id "g62"; >*************** >*** 2710 **** >! chrI AUGUSTUS CDS 425009 425074 0.98 - 0 transcript_id "g62.t1"; gene_id "g62"; >--- 2710 ---- >! chrI AUGUSTUS CDS 425009 425074 0.97 - 0 transcript_id "g62.t1"; gene_id "g62"; >*************** >*** 2712 **** >! chrI AUGUSTUS 5'-UTR 425075 425140 0.59 - . transcript_id "g62.t1"; gene_id "g62"; >--- 2712 ---- >! chrI AUGUSTUS 5'-UTR 425075 425140 0.63 - . transcript_id "g62.t1"; gene_id "g62"; >*************** >*** 2731,2732 **** >! chrI AUGUSTUS gene 428991 429566 0.24 + . g63 >! chrI AUGUSTUS transcript 428991 429566 0.24 + . g63.t1 >--- 2731,2732 ---- >! chrI AUGUSTUS gene 428991 429566 0.19 + . g63 >! chrI AUGUSTUS transcript 428991 429566 0.19 + . g63.t1 >*************** >*** 2734 **** >! chrI AUGUSTUS 5'-UTR 428991 429015 0.3 + . transcript_id "g63.t1"; gene_id "g63"; >--- 2734 ---- >! chrI AUGUSTUS 5'-UTR 428991 429015 0.23 + . transcript_id "g63.t1"; gene_id "g63"; >*************** >*** 2736,2737 **** >! chrI AUGUSTUS single 429016 429285 0.39 + 0 transcript_id "g63.t1"; gene_id "g63"; >! chrI AUGUSTUS CDS 429016 429285 0.39 + 0 transcript_id "g63.t1"; gene_id "g63"; >--- 2736,2737 ---- >! chrI AUGUSTUS single 429016 429285 0.29 + 0 transcript_id "g63.t1"; gene_id "g63"; >! chrI AUGUSTUS CDS 429016 429285 0.29 + 0 transcript_id "g63.t1"; gene_id "g63"; >*************** >*** 2739 **** >! chrI AUGUSTUS 3'-UTR 429286 429566 0.62 + . transcript_id "g63.t1"; gene_id "g63"; >--- 2739 ---- >! chrI AUGUSTUS 3'-UTR 429286 429566 0.54 + . transcript_id "g63.t1"; gene_id "g63"; >*************** >*** 2754,2755 **** >! chrI AUGUSTUS gene 429675 433660 0.14 - . g64 >! chrI AUGUSTUS transcript 429675 433660 0.14 - . g64.t1 >--- 2754,2755 ---- >! chrI AUGUSTUS gene 429675 433660 0.12 - . g64 >! chrI AUGUSTUS transcript 429675 433660 0.12 - . g64.t1 >*************** >*** 2760 **** >! chrI AUGUSTUS internal 429952 430137 0.93 - 0 transcript_id "g64.t1"; gene_id "g64"; >--- 2760 ---- >! chrI AUGUSTUS internal 429952 430137 0.97 - 0 transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 2762,2763 **** >! chrI AUGUSTUS internal 431798 432102 0.36 - 1 transcript_id "g64.t1"; gene_id "g64"; >! chrI AUGUSTUS internal 432715 432898 0.37 - 2 transcript_id "g64.t1"; gene_id "g64"; >--- 2762,2763 ---- >! chrI AUGUSTUS internal 431798 432102 0.5 - 1 transcript_id "g64.t1"; gene_id "g64"; >! chrI AUGUSTUS internal 432715 432898 0.5 - 2 transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 2767,2769 **** >! chrI AUGUSTUS initial 433532 433610 0.99 - 0 transcript_id "g64.t1"; gene_id "g64"; >! chrI AUGUSTUS intron 429824 429951 0.95 - . transcript_id "g64.t1"; gene_id "g64"; >! chrI AUGUSTUS intron 430138 431415 0.82 - . transcript_id "g64.t1"; gene_id "g64"; >--- 2767,2769 ---- >! chrI AUGUSTUS initial 433532 433610 1 - 0 transcript_id "g64.t1"; gene_id "g64"; >! chrI AUGUSTUS intron 429824 429951 0.97 - . transcript_id "g64.t1"; gene_id "g64"; >! chrI AUGUSTUS intron 430138 431415 0.84 - . transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 2771 **** >! chrI AUGUSTUS intron 432103 432714 0.37 - . transcript_id "g64.t1"; gene_id "g64"; >--- 2771 ---- >! chrI AUGUSTUS intron 432103 432714 0.5 - . transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 2777 **** >! chrI AUGUSTUS CDS 429952 430137 0.93 - 0 transcript_id "g64.t1"; gene_id "g64"; >--- 2777 ---- >! chrI AUGUSTUS CDS 429952 430137 0.97 - 0 transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 2779,2780 **** >! chrI AUGUSTUS CDS 431798 432102 0.36 - 1 transcript_id "g64.t1"; gene_id "g64"; >! chrI AUGUSTUS CDS 432715 432898 0.37 - 2 transcript_id "g64.t1"; gene_id "g64"; >--- 2779,2780 ---- >! chrI AUGUSTUS CDS 431798 432102 0.5 - 1 transcript_id "g64.t1"; gene_id "g64"; >! chrI AUGUSTUS CDS 432715 432898 0.5 - 2 transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 2784 **** >! chrI AUGUSTUS CDS 433532 433610 0.99 - 0 transcript_id "g64.t1"; gene_id "g64"; >--- 2784 ---- >! chrI AUGUSTUS CDS 433532 433610 1 - 0 transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 2786 **** >! chrI AUGUSTUS 5'-UTR 433611 433660 0.46 - . transcript_id "g64.t1"; gene_id "g64"; >--- 2786 ---- >! chrI AUGUSTUS 5'-UTR 433611 433660 0.41 - . transcript_id "g64.t1"; gene_id "g64"; >*************** >*** 2806,2807 **** >! chrI AUGUSTUS gene 433901 435695 0.26 + . g65 >! chrI AUGUSTUS transcript 433901 435695 0.26 + . g65.t1 >--- 2806,2807 ---- >! chrI AUGUSTUS gene 433901 435695 0.28 + . g65 >! chrI AUGUSTUS transcript 433901 435695 0.28 + . g65.t1 >*************** >*** 2809 **** >! chrI AUGUSTUS 5'-UTR 433901 434011 0.39 + . transcript_id "g65.t1"; gene_id "g65"; >--- 2809 ---- >! chrI AUGUSTUS 5'-UTR 433901 434011 0.42 + . transcript_id "g65.t1"; gene_id "g65"; >*************** >*** 2811 **** >! chrI AUGUSTUS initial 434012 434223 0.96 + 0 transcript_id "g65.t1"; gene_id "g65"; >--- 2811 ---- >! chrI AUGUSTUS initial 434012 434223 0.93 + 0 transcript_id "g65.t1"; gene_id "g65"; >*************** >*** 2816 **** >! chrI AUGUSTUS intron 434224 434280 0.96 + . transcript_id "g65.t1"; gene_id "g65"; >--- 2816 ---- >! chrI AUGUSTUS intron 434224 434280 0.94 + . transcript_id "g65.t1"; gene_id "g65"; >*************** >*** 2820 **** >! chrI AUGUSTUS CDS 434012 434223 0.96 + 0 transcript_id "g65.t1"; gene_id "g65"; >--- 2820 ---- >! chrI AUGUSTUS CDS 434012 434223 0.93 + 0 transcript_id "g65.t1"; gene_id "g65"; >*************** >*** 2826 **** >! chrI AUGUSTUS 3'-UTR 435577 435695 0.64 + . transcript_id "g65.t1"; gene_id "g65"; >--- 2826 ---- >! chrI AUGUSTUS 3'-UTR 435577 435695 0.65 + . transcript_id "g65.t1"; gene_id "g65"; >*************** >*** 2844,2845 **** >! chrI AUGUSTUS gene 439501 439915 0.01 + . g66 >! chrI AUGUSTUS transcript 439501 439915 0.01 + . g66.t1 >--- 2844,2845 ---- >! chrI AUGUSTUS gene 439501 439915 0.03 + . g66 >! chrI AUGUSTUS transcript 439501 439915 0.03 + . g66.t1 >*************** >*** 2847 **** >! chrI AUGUSTUS 5'-UTR 439501 439610 0.16 + . transcript_id "g66.t1"; gene_id "g66"; >--- 2847 ---- >! chrI AUGUSTUS 5'-UTR 439501 439610 0.24 + . transcript_id "g66.t1"; gene_id "g66"; >*************** >*** 2849,2850 **** >! chrI AUGUSTUS single 439611 439874 0.35 + 0 transcript_id "g66.t1"; gene_id "g66"; >! chrI AUGUSTUS CDS 439611 439874 0.35 + 0 transcript_id "g66.t1"; gene_id "g66"; >--- 2849,2850 ---- >! chrI AUGUSTUS single 439611 439874 0.47 + 0 transcript_id "g66.t1"; gene_id "g66"; >! chrI AUGUSTUS CDS 439611 439874 0.47 + 0 transcript_id "g66.t1"; gene_id "g66"; >*************** >*** 2852 **** >! chrI AUGUSTUS 3'-UTR 439875 439915 0.14 + . transcript_id "g66.t1"; gene_id "g66"; >--- 2852 ---- >! chrI AUGUSTUS 3'-UTR 439875 439915 0.13 + . transcript_id "g66.t1"; gene_id "g66"; >*************** >*** 2867,2868 **** >! chrI AUGUSTUS gene 442231 445001 0.1 + . g67 >! chrI AUGUSTUS transcript 442231 445001 0.1 + . g67.t1 >--- 2867,2868 ---- >! chrI AUGUSTUS gene 442231 445001 0.06 + . g67 >! chrI AUGUSTUS transcript 442231 445001 0.06 + . g67.t1 >*************** >*** 2870 **** >! chrI AUGUSTUS 5'-UTR 442231 442271 0.44 + . transcript_id "g67.t1"; gene_id "g67"; >--- 2870 ---- >! chrI AUGUSTUS 5'-UTR 442231 442271 0.43 + . transcript_id "g67.t1"; gene_id "g67"; >*************** >*** 2872,2879 **** >! chrI AUGUSTUS initial 442272 442361 0.83 + 0 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS internal 442668 442932 0.77 + 0 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS terminal 444733 444782 0.55 + 2 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS intron 442362 442667 0.97 + . transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS intron 442933 444732 0.55 + . transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS CDS 442272 442361 0.83 + 0 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS CDS 442668 442932 0.77 + 0 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS CDS 444733 444782 0.55 + 2 transcript_id "g67.t1"; gene_id "g67"; >--- 2872,2879 ---- >! chrI AUGUSTUS initial 442272 442361 0.9 + 0 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS internal 442668 442932 0.75 + 0 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS terminal 444733 444782 0.5 + 2 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS intron 442362 442667 0.96 + . transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS intron 442933 444732 0.5 + . transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS CDS 442272 442361 0.9 + 0 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS CDS 442668 442932 0.75 + 0 transcript_id "g67.t1"; gene_id "g67"; >! chrI AUGUSTUS CDS 444733 444782 0.5 + 2 transcript_id "g67.t1"; gene_id "g67"; >*************** >*** 2881 **** >! chrI AUGUSTUS 3'-UTR 444783 445001 0.26 + . transcript_id "g67.t1"; gene_id "g67"; >--- 2881 ---- >! chrI AUGUSTUS 3'-UTR 444783 445001 0.18 + . transcript_id "g67.t1"; gene_id "g67"; >*************** >*** 2897,2898 **** >! chrI AUGUSTUS gene 447151 448414 0.16 + . g68 >! chrI AUGUSTUS transcript 447151 448414 0.16 + . g68.t1 >--- 2897,2898 ---- >! chrI AUGUSTUS gene 447151 448414 0.29 + . g68 >! chrI AUGUSTUS transcript 447151 448414 0.29 + . g68.t1 >*************** >*** 2900 **** >! chrI AUGUSTUS 5'-UTR 447151 447315 0.24 + . transcript_id "g68.t1"; gene_id "g68"; >--- 2900 ---- >! chrI AUGUSTUS 5'-UTR 447151 447315 0.34 + . transcript_id "g68.t1"; gene_id "g68"; >*************** >*** 2902,2904 **** >! chrI AUGUSTUS initial 447316 447480 0.7 + 0 transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS internal 447586 447693 0.62 + 0 transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS internal 447837 447998 0.94 + 0 transcript_id "g68.t1"; gene_id "g68"; >--- 2902,2904 ---- >! chrI AUGUSTUS initial 447316 447480 0.73 + 0 transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS internal 447586 447693 0.66 + 0 transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS internal 447837 447998 0.96 + 0 transcript_id "g68.t1"; gene_id "g68"; >*************** >*** 2906,2907 **** >! chrI AUGUSTUS intron 447481 447585 0.9 + . transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS intron 447694 447836 0.65 + . transcript_id "g68.t1"; gene_id "g68"; >--- 2906,2907 ---- >! chrI AUGUSTUS intron 447481 447585 0.89 + . transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS intron 447694 447836 0.69 + . transcript_id "g68.t1"; gene_id "g68"; >*************** >*** 2909,2911 **** >! chrI AUGUSTUS CDS 447316 447480 0.7 + 0 transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS CDS 447586 447693 0.62 + 0 transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS CDS 447837 447998 0.94 + 0 transcript_id "g68.t1"; gene_id "g68"; >--- 2909,2911 ---- >! chrI AUGUSTUS CDS 447316 447480 0.73 + 0 transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS CDS 447586 447693 0.66 + 0 transcript_id "g68.t1"; gene_id "g68"; >! chrI AUGUSTUS CDS 447837 447998 0.96 + 0 transcript_id "g68.t1"; gene_id "g68"; >*************** >*** 2914 **** >! chrI AUGUSTUS 3'-UTR 448369 448414 0.98 + . transcript_id "g68.t1"; gene_id "g68"; >--- 2914 ---- >! chrI AUGUSTUS 3'-UTR 448369 448414 0.97 + . transcript_id "g68.t1"; gene_id "g68"; >*************** >*** 2933 **** >! chrI AUGUSTUS 3'-UTR 449300 449414 0.61 - . transcript_id "g69.t1"; gene_id "g69"; >--- 2933 ---- >! chrI AUGUSTUS 3'-UTR 449300 449414 0.56 - . transcript_id "g69.t1"; gene_id "g69"; >*************** >*** 2938,2940 **** >! chrI AUGUSTUS internal 449930 450041 1 - 0 transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS internal 450140 450355 0.4 - 0 transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS internal 450475 450575 0.35 - 2 transcript_id "g69.t1"; gene_id "g69"; >--- 2938,2940 ---- >! chrI AUGUSTUS internal 449930 450041 0.99 - 0 transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS internal 450140 450355 0.5 - 0 transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS internal 450475 450575 0.47 - 2 transcript_id "g69.t1"; gene_id "g69"; >*************** >*** 2942 **** >! chrI AUGUSTUS initial 451285 451367 0.52 - 0 transcript_id "g69.t1"; gene_id "g69"; >--- 2942 ---- >! chrI AUGUSTUS initial 451285 451367 0.58 - 0 transcript_id "g69.t1"; gene_id "g69"; >*************** >*** 2947,2949 **** >! chrI AUGUSTUS intron 450356 450474 0.21 - . transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS intron 450576 450619 0.79 - . transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS intron 451123 451284 0.42 - . transcript_id "g69.t1"; gene_id "g69"; >--- 2947,2949 ---- >! chrI AUGUSTUS intron 450356 450474 0.25 - . transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS intron 450576 450619 0.87 - . transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS intron 451123 451284 0.49 - . transcript_id "g69.t1"; gene_id "g69"; >*************** >*** 2953,2955 **** >! chrI AUGUSTUS CDS 449930 450041 1 - 0 transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS CDS 450140 450355 0.4 - 0 transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS CDS 450475 450575 0.35 - 2 transcript_id "g69.t1"; gene_id "g69"; >--- 2953,2955 ---- >! chrI AUGUSTUS CDS 449930 450041 0.99 - 0 transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS CDS 450140 450355 0.5 - 0 transcript_id "g69.t1"; gene_id "g69"; >! chrI AUGUSTUS CDS 450475 450575 0.47 - 2 transcript_id "g69.t1"; gene_id "g69"; >*************** >*** 2957 **** >! chrI AUGUSTUS CDS 451285 451367 0.52 - 0 transcript_id "g69.t1"; gene_id "g69"; >--- 2957 ---- >! chrI AUGUSTUS CDS 451285 451367 0.58 - 0 transcript_id "g69.t1"; gene_id "g69"; >*************** >*** 2959 **** >! chrI AUGUSTUS 5'-UTR 451368 451650 0.18 - . transcript_id "g69.t1"; gene_id "g69"; >--- 2959 ---- >! chrI AUGUSTUS 5'-UTR 451368 451650 0.22 - . transcript_id "g69.t1"; gene_id "g69"; >*************** >*** 2981 **** >! chrI AUGUSTUS 3'-UTR 451898 451974 0.53 - . transcript_id "g70.t1"; gene_id "g70"; >--- 2981 ---- >! chrI AUGUSTUS 3'-UTR 451898 451974 0.49 - . transcript_id "g70.t1"; gene_id "g70"; >*************** >*** 2985 **** >! chrI AUGUSTUS internal 454659 454895 0.93 - 0 transcript_id "g70.t1"; gene_id "g70"; >--- 2985 ---- >! chrI AUGUSTUS internal 454659 454895 0.92 - 0 transcript_id "g70.t1"; gene_id "g70"; >*************** >*** 2987 **** >! chrI AUGUSTUS initial 456055 456445 0.56 - 0 transcript_id "g70.t1"; gene_id "g70"; >--- 2987 ---- >! chrI AUGUSTUS initial 456055 456445 0.48 - 0 transcript_id "g70.t1"; gene_id "g70"; >*************** >*** 2989,2991 **** >! chrI AUGUSTUS intron 453354 454658 0.93 - . transcript_id "g70.t1"; gene_id "g70"; >! chrI AUGUSTUS intron 454896 455019 0.93 - . transcript_id "g70.t1"; gene_id "g70"; >! chrI AUGUSTUS intron 455094 456054 1 - . transcript_id "g70.t1"; gene_id "g70"; >--- 2989,2991 ---- >! chrI AUGUSTUS intron 453354 454658 0.92 - . transcript_id "g70.t1"; gene_id "g70"; >! chrI AUGUSTUS intron 454896 455019 0.92 - . transcript_id "g70.t1"; gene_id "g70"; >! chrI AUGUSTUS intron 455094 456054 0.99 - . transcript_id "g70.t1"; gene_id "g70"; >*************** >*** 2994 **** >! chrI AUGUSTUS CDS 454659 454895 0.93 - 0 transcript_id "g70.t1"; gene_id "g70"; >--- 2994 ---- >! chrI AUGUSTUS CDS 454659 454895 0.92 - 0 transcript_id "g70.t1"; gene_id "g70"; >*************** >*** 2996 **** >! chrI AUGUSTUS CDS 456055 456445 0.56 - 0 transcript_id "g70.t1"; gene_id "g70"; >--- 2996 ---- >! chrI AUGUSTUS CDS 456055 456445 0.48 - 0 transcript_id "g70.t1"; gene_id "g70"; >*************** >*** 2998 **** >! chrI AUGUSTUS 5'-UTR 456446 456570 0.2 - . transcript_id "g70.t1"; gene_id "g70"; >--- 2998 ---- >! chrI AUGUSTUS 5'-UTR 456446 456570 0.23 - . transcript_id "g70.t1"; gene_id "g70"; >*************** >*** 3017,3018 **** >! chrI AUGUSTUS gene 468788 482350 0.32 - . g71 >! chrI AUGUSTUS transcript 468788 482350 0.32 - . g71.t1 >--- 3017,3018 ---- >! chrI AUGUSTUS gene 468788 482350 0.38 - . g71 >! chrI AUGUSTUS transcript 468788 482350 0.38 - . g71.t1 >*************** >*** 3020 **** >! chrI AUGUSTUS 3'-UTR 468788 468965 0.86 - . transcript_id "g71.t1"; gene_id "g71"; >--- 3020 ---- >! chrI AUGUSTUS 3'-UTR 468788 468965 0.9 - . transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 3024,3025 **** >! chrI AUGUSTUS internal 472450 472505 0.63 - 0 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS internal 473312 473662 0.99 - 0 transcript_id "g71.t1"; gene_id "g71"; >--- 3024,3025 ---- >! chrI AUGUSTUS internal 472450 472505 0.56 - 0 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS internal 473312 473662 1 - 0 transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 3027,3029 **** >! chrI AUGUSTUS internal 478229 478801 0.99 - 2 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS internal 480305 480569 0.98 - 0 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS initial 482218 482274 0.91 - 0 transcript_id "g71.t1"; gene_id "g71"; >--- 3027,3029 ---- >! chrI AUGUSTUS internal 478229 478801 0.96 - 2 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS internal 480305 480569 1 - 0 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS initial 482218 482274 0.95 - 0 transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 3031,3032 **** >! chrI AUGUSTUS intron 471064 472449 0.47 - . transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS intron 472506 473311 0.77 - . transcript_id "g71.t1"; gene_id "g71"; >--- 3031,3032 ---- >! chrI AUGUSTUS intron 471064 472449 0.5 - . transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS intron 472506 473311 0.73 - . transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 3035,3036 **** >! chrI AUGUSTUS intron 478802 480304 0.99 - . transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS intron 480570 482217 0.98 - . transcript_id "g71.t1"; gene_id "g71"; >--- 3035,3036 ---- >! chrI AUGUSTUS intron 478802 480304 0.96 - . transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS intron 480570 482217 1 - . transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 3039,3040 **** >! chrI AUGUSTUS CDS 472450 472505 0.63 - 0 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS CDS 473312 473662 0.99 - 0 transcript_id "g71.t1"; gene_id "g71"; >--- 3039,3040 ---- >! chrI AUGUSTUS CDS 472450 472505 0.56 - 0 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS CDS 473312 473662 1 - 0 transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 3042,3044 **** >! chrI AUGUSTUS CDS 478229 478801 0.99 - 2 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS CDS 480305 480569 0.98 - 0 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS CDS 482218 482274 0.91 - 0 transcript_id "g71.t1"; gene_id "g71"; >--- 3042,3044 ---- >! chrI AUGUSTUS CDS 478229 478801 0.96 - 2 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS CDS 480305 480569 1 - 0 transcript_id "g71.t1"; gene_id "g71"; >! chrI AUGUSTUS CDS 482218 482274 0.95 - 0 transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 3046 **** >! chrI AUGUSTUS 5'-UTR 482275 482350 0.74 - . transcript_id "g71.t1"; gene_id "g71"; >--- 3046 ---- >! chrI AUGUSTUS 5'-UTR 482275 482350 0.82 - . transcript_id "g71.t1"; gene_id "g71"; >*************** >*** 3069,3070 **** >! chrI AUGUSTUS gene 483181 483729 0.45 + . g72 >! chrI AUGUSTUS transcript 483181 483729 0.45 + . g72.t1 >--- 3069,3070 ---- >! chrI AUGUSTUS gene 483181 483729 0.49 + . g72 >! chrI AUGUSTUS transcript 483181 483729 0.49 + . g72.t1 >*************** >*** 3072 **** >! chrI AUGUSTUS 5'-UTR 483181 483203 0.46 + . transcript_id "g72.t1"; gene_id "g72"; >--- 3072 ---- >! chrI AUGUSTUS 5'-UTR 483181 483203 0.49 + . transcript_id "g72.t1"; gene_id "g72"; >*************** >*** 3074,3075 **** >! chrI AUGUSTUS single 483204 483653 0.95 + 0 transcript_id "g72.t1"; gene_id "g72"; >! chrI AUGUSTUS CDS 483204 483653 0.95 + 0 transcript_id "g72.t1"; gene_id "g72"; >--- 3074,3075 ---- >! chrI AUGUSTUS single 483204 483653 0.93 + 0 transcript_id "g72.t1"; gene_id "g72"; >! chrI AUGUSTUS CDS 483204 483653 0.93 + 0 transcript_id "g72.t1"; gene_id "g72"; >*************** >*** 3092,3093 **** >! chrI AUGUSTUS gene 485801 497384 0.09 + . g73 >! chrI AUGUSTUS transcript 485801 497384 0.09 + . g73.t1 >--- 3092,3093 ---- >! chrI AUGUSTUS gene 485801 497384 0.15 + . g73 >! chrI AUGUSTUS transcript 485801 497384 0.15 + . g73.t1 >*************** >*** 3095 **** >! chrI AUGUSTUS 5'-UTR 485801 485869 0.93 + . transcript_id "g73.t1"; gene_id "g73"; >--- 3095 ---- >! chrI AUGUSTUS 5'-UTR 485801 485869 0.89 + . transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 3097 **** >! chrI AUGUSTUS initial 485870 486005 1 + 0 transcript_id "g73.t1"; gene_id "g73"; >--- 3097 ---- >! chrI AUGUSTUS initial 485870 486005 0.99 + 0 transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 3100,3101 **** >! chrI AUGUSTUS internal 489977 490191 0.16 + 2 transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS internal 490238 490858 0.97 + 0 transcript_id "g73.t1"; gene_id "g73"; >--- 3100,3101 ---- >! chrI AUGUSTUS internal 489977 490191 0.21 + 2 transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS internal 490238 490858 0.99 + 0 transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 3103 **** >! chrI AUGUSTUS internal 494937 495299 0.8 + 0 transcript_id "g73.t1"; gene_id "g73"; >--- 3103 ---- >! chrI AUGUSTUS internal 494937 495299 0.76 + 0 transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 3107 **** >! chrI AUGUSTUS intron 488568 489976 0.16 + . transcript_id "g73.t1"; gene_id "g73"; >--- 3107 ---- >! chrI AUGUSTUS intron 488568 489976 0.21 + . transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 3109,3112 **** >! chrI AUGUSTUS intron 490859 492608 0.96 + . transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS intron 492969 494936 0.89 + . transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS intron 495300 496668 0.8 + . transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS CDS 485870 486005 1 + 0 transcript_id "g73.t1"; gene_id "g73"; >--- 3109,3112 ---- >! chrI AUGUSTUS intron 490859 492608 0.98 + . transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS intron 492969 494936 0.88 + . transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS intron 495300 496668 0.76 + . transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS CDS 485870 486005 0.99 + 0 transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 3115,3116 **** >! chrI AUGUSTUS CDS 489977 490191 0.16 + 2 transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS CDS 490238 490858 0.97 + 0 transcript_id "g73.t1"; gene_id "g73"; >--- 3115,3116 ---- >! chrI AUGUSTUS CDS 489977 490191 0.21 + 2 transcript_id "g73.t1"; gene_id "g73"; >! chrI AUGUSTUS CDS 490238 490858 0.99 + 0 transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 3118 **** >! chrI AUGUSTUS CDS 494937 495299 0.8 + 0 transcript_id "g73.t1"; gene_id "g73"; >--- 3118 ---- >! chrI AUGUSTUS CDS 494937 495299 0.76 + 0 transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 3121 **** >! chrI AUGUSTUS 3'-UTR 497263 497384 0.95 + . transcript_id "g73.t1"; gene_id "g73"; >--- 3121 ---- >! chrI AUGUSTUS 3'-UTR 497263 497384 0.98 + . transcript_id "g73.t1"; gene_id "g73"; >*************** >*** 3146,3147 **** >! chrI AUGUSTUS gene 498101 506255 0.23 + . g74 >! chrI AUGUSTUS transcript 498101 506255 0.23 + . g74.t1 >--- 3146,3147 ---- >! chrI AUGUSTUS gene 498101 506255 0.25 + . g74 >! chrI AUGUSTUS transcript 498101 506255 0.25 + . g74.t1 >*************** >*** 3149 **** >! chrI AUGUSTUS 5'-UTR 498101 498136 0.81 + . transcript_id "g74.t1"; gene_id "g74"; >--- 3149 ---- >! chrI AUGUSTUS 5'-UTR 498101 498136 0.83 + . transcript_id "g74.t1"; gene_id "g74"; >*************** >*** 3151 **** >! chrI AUGUSTUS initial 498137 498428 0.99 + 0 transcript_id "g74.t1"; gene_id "g74"; >--- 3151 ---- >! chrI AUGUSTUS initial 498137 498428 1 + 0 transcript_id "g74.t1"; gene_id "g74"; >*************** >*** 3162 **** >! chrI AUGUSTUS CDS 498137 498428 0.99 + 0 transcript_id "g74.t1"; gene_id "g74"; >--- 3162 ---- >! chrI AUGUSTUS CDS 498137 498428 1 + 0 transcript_id "g74.t1"; gene_id "g74"; >*************** >*** 3169,3170 **** >! chrI AUGUSTUS 3'-UTR 505684 505704 0.91 + . transcript_id "g74.t1"; gene_id "g74"; >! chrI AUGUSTUS 3'-UTR 505961 506255 0.31 + . transcript_id "g74.t1"; gene_id "g74"; >--- 3169,3170 ---- >! chrI AUGUSTUS 3'-UTR 505684 505704 0.89 + . transcript_id "g74.t1"; gene_id "g74"; >! chrI AUGUSTUS 3'-UTR 505961 506255 0.3 + . transcript_id "g74.t1"; gene_id "g74"; >*************** >*** 3190,3191 **** >! chrI AUGUSTUS gene 510942 511710 0.03 - . g75 >! chrI AUGUSTUS transcript 510942 511710 0.03 - . g75.t1 >--- 3190,3191 ---- >! chrI AUGUSTUS gene 510942 511710 0.02 - . g75 >! chrI AUGUSTUS transcript 510942 511710 0.02 - . g75.t1 >*************** >*** 3193 **** >! chrI AUGUSTUS 3'-UTR 510942 510990 0.22 - . transcript_id "g75.t1"; gene_id "g75"; >--- 3193 ---- >! chrI AUGUSTUS 3'-UTR 510942 510990 0.2 - . transcript_id "g75.t1"; gene_id "g75"; >*************** >*** 3195,3199 **** >! chrI AUGUSTUS terminal 510991 511278 0.21 - 0 transcript_id "g75.t1"; gene_id "g75"; >! chrI AUGUSTUS initial 511559 511684 0.8 - 0 transcript_id "g75.t1"; gene_id "g75"; >! chrI AUGUSTUS intron 511279 511558 0.84 - . transcript_id "g75.t1"; gene_id "g75"; >! chrI AUGUSTUS CDS 510991 511278 0.21 - 0 transcript_id "g75.t1"; gene_id "g75"; >! chrI AUGUSTUS CDS 511559 511684 0.8 - 0 transcript_id "g75.t1"; gene_id "g75"; >--- 3195,3199 ---- >! chrI AUGUSTUS terminal 510991 511278 0.22 - 0 transcript_id "g75.t1"; gene_id "g75"; >! chrI AUGUSTUS initial 511559 511684 0.81 - 0 transcript_id "g75.t1"; gene_id "g75"; >! chrI AUGUSTUS intron 511279 511558 0.83 - . transcript_id "g75.t1"; gene_id "g75"; >! chrI AUGUSTUS CDS 510991 511278 0.22 - 0 transcript_id "g75.t1"; gene_id "g75"; >! chrI AUGUSTUS CDS 511559 511684 0.81 - 0 transcript_id "g75.t1"; gene_id "g75"; >*************** >*** 3201 **** >! chrI AUGUSTUS 5'-UTR 511685 511710 0.3 - . transcript_id "g75.t1"; gene_id "g75"; >--- 3201 ---- >! chrI AUGUSTUS 5'-UTR 511685 511710 0.23 - . transcript_id "g75.t1"; gene_id "g75"; >*************** >*** 3217,3218 **** >! chrI AUGUSTUS gene 537110 542115 0.11 + . g76 >! chrI AUGUSTUS transcript 537110 542115 0.11 + . g76.t1 >--- 3217,3218 ---- >! chrI AUGUSTUS gene 537110 542115 0.07 + . g76 >! chrI AUGUSTUS transcript 537110 542115 0.07 + . g76.t1 >*************** >*** 3220 **** >! chrI AUGUSTUS 5'-UTR 537110 537191 0.22 + . transcript_id "g76.t1"; gene_id "g76"; >--- 3220 ---- >! chrI AUGUSTUS 5'-UTR 537110 537191 0.26 + . transcript_id "g76.t1"; gene_id "g76"; >*************** >*** 3222,3224 **** >! chrI AUGUSTUS initial 537192 537212 0.44 + 0 transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS internal 537812 538140 0.53 + 0 transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS internal 538769 539061 0.98 + 1 transcript_id "g76.t1"; gene_id "g76"; >--- 3222,3224 ---- >! chrI AUGUSTUS initial 537192 537212 0.42 + 0 transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS internal 537812 538140 0.5 + 0 transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS internal 538769 539061 0.97 + 1 transcript_id "g76.t1"; gene_id "g76"; >*************** >*** 3226 **** >! chrI AUGUSTUS internal 541581 541668 1 + 1 transcript_id "g76.t1"; gene_id "g76"; >--- 3226 ---- >! chrI AUGUSTUS internal 541581 541668 0.99 + 1 transcript_id "g76.t1"; gene_id "g76"; >*************** >*** 3228 **** >! chrI AUGUSTUS intron 537213 537811 0.44 + . transcript_id "g76.t1"; gene_id "g76"; >--- 3228 ---- >! chrI AUGUSTUS intron 537213 537811 0.42 + . transcript_id "g76.t1"; gene_id "g76"; >*************** >*** 3230,3231 **** >! chrI AUGUSTUS intron 539062 540409 0.98 + . transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS intron 540747 541580 1 + . transcript_id "g76.t1"; gene_id "g76"; >--- 3230,3231 ---- >! chrI AUGUSTUS intron 539062 540409 0.97 + . transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS intron 540747 541580 0.99 + . transcript_id "g76.t1"; gene_id "g76"; >*************** >*** 3233,3235 **** >! chrI AUGUSTUS CDS 537192 537212 0.44 + 0 transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS CDS 537812 538140 0.53 + 0 transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS CDS 538769 539061 0.98 + 1 transcript_id "g76.t1"; gene_id "g76"; >--- 3233,3235 ---- >! chrI AUGUSTUS CDS 537192 537212 0.42 + 0 transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS CDS 537812 538140 0.5 + 0 transcript_id "g76.t1"; gene_id "g76"; >! chrI AUGUSTUS CDS 538769 539061 0.97 + 1 transcript_id "g76.t1"; gene_id "g76"; >*************** >*** 3237 **** >! chrI AUGUSTUS CDS 541581 541668 1 + 1 transcript_id "g76.t1"; gene_id "g76"; >--- 3237 ---- >! chrI AUGUSTUS CDS 541581 541668 0.99 + 1 transcript_id "g76.t1"; gene_id "g76"; >*************** >*** 3240 **** >! chrI AUGUSTUS 3'-UTR 541850 542115 0.33 + . transcript_id "g76.t1"; gene_id "g76"; >--- 3240 ---- >! chrI AUGUSTUS 3'-UTR 541850 542115 0.27 + . transcript_id "g76.t1"; gene_id "g76"; >*************** >*** 3259,3260 **** >! chrI AUGUSTUS gene 544710 546186 0.24 + . g77 >! chrI AUGUSTUS transcript 544710 546186 0.24 + . g77.t1 >--- 3259,3260 ---- >! chrI AUGUSTUS gene 544710 546186 0.18 + . g77 >! chrI AUGUSTUS transcript 544710 546186 0.18 + . g77.t1 >*************** >*** 3262 **** >! chrI AUGUSTUS 5'-UTR 544710 544773 0.36 + . transcript_id "g77.t1"; gene_id "g77"; >--- 3262 ---- >! chrI AUGUSTUS 5'-UTR 544710 544773 0.25 + . transcript_id "g77.t1"; gene_id "g77"; >*************** >*** 3270 **** >! chrI AUGUSTUS intron 545865 545941 0.92 + . transcript_id "g77.t1"; gene_id "g77"; >--- 3270 ---- >! chrI AUGUSTUS intron 545865 545941 0.9 + . transcript_id "g77.t1"; gene_id "g77"; >*************** >*** 3276 **** >! chrI AUGUSTUS 3'-UTR 546155 546186 0.86 + . transcript_id "g77.t1"; gene_id "g77"; >--- 3276 ---- >! chrI AUGUSTUS 3'-UTR 546155 546186 0.79 + . transcript_id "g77.t1"; gene_id "g77"; >*************** >*** 3296 **** >! chrI AUGUSTUS 3'-UTR 546861 546966 0.86 - . transcript_id "g78.t1"; gene_id "g78"; >--- 3296 ---- >! chrI AUGUSTUS 3'-UTR 546861 546966 0.76 - . transcript_id "g78.t1"; gene_id "g78"; >*************** >*** 3300 **** >! chrI AUGUSTUS initial 548122 548226 0.35 - 0 transcript_id "g78.t1"; gene_id "g78"; >--- 3300 ---- >! chrI AUGUSTUS initial 548122 548226 0.32 - 0 transcript_id "g78.t1"; gene_id "g78"; >*************** >*** 3302 **** >! chrI AUGUSTUS intron 547334 548121 0.98 - . transcript_id "g78.t1"; gene_id "g78"; >--- 3302 ---- >! chrI AUGUSTUS intron 547334 548121 0.99 - . transcript_id "g78.t1"; gene_id "g78"; >*************** >*** 3305 **** >! chrI AUGUSTUS CDS 548122 548226 0.35 - 0 transcript_id "g78.t1"; gene_id "g78"; >--- 3305 ---- >! chrI AUGUSTUS CDS 548122 548226 0.32 - 0 transcript_id "g78.t1"; gene_id "g78"; >*************** >*** 3323,3324 **** >! chrI AUGUSTUS gene 549240 550622 0.66 + . g79 >! chrI AUGUSTUS transcript 549240 550622 0.66 + . g79.t1 >--- 3323,3324 ---- >! chrI AUGUSTUS gene 549240 550622 0.65 + . g79 >! chrI AUGUSTUS transcript 549240 550622 0.65 + . g79.t1 >*************** >*** 3326 **** >! chrI AUGUSTUS 5'-UTR 549240 549296 0.86 + . transcript_id "g79.t1"; gene_id "g79"; >--- 3326 ---- >! chrI AUGUSTUS 5'-UTR 549240 549296 0.85 + . transcript_id "g79.t1"; gene_id "g79"; >*************** >*** 3328 **** >! chrI AUGUSTUS initial 549297 549339 0.94 + 0 transcript_id "g79.t1"; gene_id "g79"; >--- 3328 ---- >! chrI AUGUSTUS initial 549297 549339 0.97 + 0 transcript_id "g79.t1"; gene_id "g79"; >*************** >*** 3332 **** >! chrI AUGUSTUS intron 549340 549774 0.99 + . transcript_id "g79.t1"; gene_id "g79"; >--- 3332 ---- >! chrI AUGUSTUS intron 549340 549774 0.97 + . transcript_id "g79.t1"; gene_id "g79"; >*************** >*** 3335 **** >! chrI AUGUSTUS CDS 549297 549339 0.94 + 0 transcript_id "g79.t1"; gene_id "g79"; >--- 3335 ---- >! chrI AUGUSTUS CDS 549297 549339 0.97 + 0 transcript_id "g79.t1"; gene_id "g79"; >*************** >*** 3340 **** >! chrI AUGUSTUS 3'-UTR 550545 550622 0.8 + . transcript_id "g79.t1"; gene_id "g79"; >--- 3340 ---- >! chrI AUGUSTUS 3'-UTR 550545 550622 0.79 + . transcript_id "g79.t1"; gene_id "g79"; >*************** >*** 3357,3358 **** >! chrI AUGUSTUS gene 551261 551649 0.37 - . g80 >! chrI AUGUSTUS transcript 551261 551649 0.37 - . g80.t1 >--- 3357,3358 ---- >! chrI AUGUSTUS gene 551261 551649 0.35 - . g80 >! chrI AUGUSTUS transcript 551261 551649 0.35 - . g80.t1 >*************** >*** 3365 **** >! chrI AUGUSTUS 5'-UTR 551592 551649 0.42 - . transcript_id "g80.t1"; gene_id "g80"; >--- 3365 ---- >! chrI AUGUSTUS 5'-UTR 551592 551649 0.43 - . transcript_id "g80.t1"; gene_id "g80"; >*************** >*** 3382 **** >! chrI AUGUSTUS 5'-UTR 553040 553094 0.33 + . transcript_id "g81.t1"; gene_id "g81"; >--- 3382 ---- >! chrI AUGUSTUS 5'-UTR 553040 553094 0.42 + . transcript_id "g81.t1"; gene_id "g81"; >*************** >*** 3384,3385 **** >! chrI AUGUSTUS initial 553095 553436 0.81 + 0 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS internal 555148 555212 0.87 + 0 transcript_id "g81.t1"; gene_id "g81"; >--- 3384,3385 ---- >! chrI AUGUSTUS initial 553095 553436 0.82 + 0 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS internal 555148 555212 0.89 + 0 transcript_id "g81.t1"; gene_id "g81"; >*************** >*** 3387,3389 **** >! chrI AUGUSTUS internal 556441 556531 0.95 + 1 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS internal 556601 556771 0.94 + 0 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS internal 556874 557016 0.95 + 0 transcript_id "g81.t1"; gene_id "g81"; >--- 3387,3389 ---- >! chrI AUGUSTUS internal 556441 556531 0.96 + 1 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS internal 556601 556771 1 + 0 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS internal 556874 557016 0.87 + 0 transcript_id "g81.t1"; gene_id "g81"; >*************** >*** 3391 **** >! chrI AUGUSTUS intron 553437 555147 0.82 + . transcript_id "g81.t1"; gene_id "g81"; >--- 3391 ---- >! chrI AUGUSTUS intron 553437 555147 0.84 + . transcript_id "g81.t1"; gene_id "g81"; >*************** >*** 3393,3395 **** >! chrI AUGUSTUS intron 556390 556440 0.92 + . transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS intron 556532 556600 0.91 + . transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS intron 556772 556873 0.95 + . transcript_id "g81.t1"; gene_id "g81"; >--- 3393,3395 ---- >! chrI AUGUSTUS intron 556390 556440 0.94 + . transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS intron 556532 556600 0.96 + . transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS intron 556772 556873 0.89 + . transcript_id "g81.t1"; gene_id "g81"; >*************** >*** 3397,3398 **** >! chrI AUGUSTUS CDS 553095 553436 0.81 + 0 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS CDS 555148 555212 0.87 + 0 transcript_id "g81.t1"; gene_id "g81"; >--- 3397,3398 ---- >! chrI AUGUSTUS CDS 553095 553436 0.82 + 0 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS CDS 555148 555212 0.89 + 0 transcript_id "g81.t1"; gene_id "g81"; >*************** >*** 3400,3402 **** >! chrI AUGUSTUS CDS 556441 556531 0.95 + 1 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS CDS 556601 556771 0.94 + 0 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS CDS 556874 557016 0.95 + 0 transcript_id "g81.t1"; gene_id "g81"; >--- 3400,3402 ---- >! chrI AUGUSTUS CDS 556441 556531 0.96 + 1 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS CDS 556601 556771 1 + 0 transcript_id "g81.t1"; gene_id "g81"; >! chrI AUGUSTUS CDS 556874 557016 0.87 + 0 transcript_id "g81.t1"; gene_id "g81"; >*************** >*** 3425,3426 **** >! chrI AUGUSTUS gene 558160 561878 0.12 + . g82 >! chrI AUGUSTUS transcript 558160 561878 0.12 + . g82.t1 >--- 3425,3426 ---- >! chrI AUGUSTUS gene 558160 561878 0.11 + . g82 >! chrI AUGUSTUS transcript 558160 561878 0.11 + . g82.t1 >*************** >*** 3428 **** >! chrI AUGUSTUS 5'-UTR 558160 558195 0.8 + . transcript_id "g82.t1"; gene_id "g82"; >--- 3428 ---- >! chrI AUGUSTUS 5'-UTR 558160 558195 0.81 + . transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3432 **** >! chrI AUGUSTUS internal 558775 558945 0.99 + 0 transcript_id "g82.t1"; gene_id "g82"; >--- 3432 ---- >! chrI AUGUSTUS internal 558775 558945 1 + 0 transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3434 **** >! chrI AUGUSTUS internal 559820 559990 0.7 + 1 transcript_id "g82.t1"; gene_id "g82"; >--- 3434 ---- >! chrI AUGUSTUS internal 559820 559990 0.75 + 1 transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3436,3438 **** >! chrI AUGUSTUS internal 561026 561196 0.99 + 0 transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS internal 561349 561479 0.8 + 0 transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS terminal 561527 561821 0.74 + 1 transcript_id "g82.t1"; gene_id "g82"; >--- 3436,3438 ---- >! chrI AUGUSTUS internal 561026 561196 1 + 0 transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS internal 561349 561479 0.81 + 0 transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS terminal 561527 561821 0.76 + 1 transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3440 **** >! chrI AUGUSTUS intron 558729 558774 0.99 + . transcript_id "g82.t1"; gene_id "g82"; >--- 3440 ---- >! chrI AUGUSTUS intron 558729 558774 1 + . transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3443 **** >! chrI AUGUSTUS intron 559991 560888 0.7 + . transcript_id "g82.t1"; gene_id "g82"; >--- 3443 ---- >! chrI AUGUSTUS intron 559991 560888 0.75 + . transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3445,3446 **** >! chrI AUGUSTUS intron 561197 561348 0.8 + . transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS intron 561480 561526 0.8 + . transcript_id "g82.t1"; gene_id "g82"; >--- 3445,3446 ---- >! chrI AUGUSTUS intron 561197 561348 0.81 + . transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS intron 561480 561526 0.81 + . transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3449 **** >! chrI AUGUSTUS CDS 558775 558945 0.99 + 0 transcript_id "g82.t1"; gene_id "g82"; >--- 3449 ---- >! chrI AUGUSTUS CDS 558775 558945 1 + 0 transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3451 **** >! chrI AUGUSTUS CDS 559820 559990 0.7 + 1 transcript_id "g82.t1"; gene_id "g82"; >--- 3451 ---- >! chrI AUGUSTUS CDS 559820 559990 0.75 + 1 transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3453,3455 **** >! chrI AUGUSTUS CDS 561026 561196 0.99 + 0 transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS CDS 561349 561479 0.8 + 0 transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS CDS 561527 561821 0.74 + 1 transcript_id "g82.t1"; gene_id "g82"; >--- 3453,3455 ---- >! chrI AUGUSTUS CDS 561026 561196 1 + 0 transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS CDS 561349 561479 0.81 + 0 transcript_id "g82.t1"; gene_id "g82"; >! chrI AUGUSTUS CDS 561527 561821 0.76 + 1 transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3457 **** >! chrI AUGUSTUS 3'-UTR 561822 561878 0.2 + . transcript_id "g82.t1"; gene_id "g82"; >--- 3457 ---- >! chrI AUGUSTUS 3'-UTR 561822 561878 0.22 + . transcript_id "g82.t1"; gene_id "g82"; >*************** >*** 3477,3478 **** >! chrI AUGUSTUS gene 562620 564368 0.25 + . g83 >! chrI AUGUSTUS transcript 562620 564368 0.25 + . g83.t1 >--- 3477,3478 ---- >! chrI AUGUSTUS gene 562620 564368 0.21 + . g83 >! chrI AUGUSTUS transcript 562620 564368 0.21 + . g83.t1 >*************** >*** 3480 **** >! chrI AUGUSTUS 5'-UTR 562620 562668 0.48 + . transcript_id "g83.t1"; gene_id "g83"; >--- 3480 ---- >! chrI AUGUSTUS 5'-UTR 562620 562668 0.4 + . transcript_id "g83.t1"; gene_id "g83"; >*************** >*** 3482,3483 **** >! chrI AUGUSTUS single 562669 562998 0.97 + 0 transcript_id "g83.t1"; gene_id "g83"; >! chrI AUGUSTUS CDS 562669 562998 0.97 + 0 transcript_id "g83.t1"; gene_id "g83"; >--- 3482,3483 ---- >! chrI AUGUSTUS single 562669 562998 0.96 + 0 transcript_id "g83.t1"; gene_id "g83"; >! chrI AUGUSTUS CDS 562669 562998 0.96 + 0 transcript_id "g83.t1"; gene_id "g83"; >*************** >*** 3485,3486 **** >! chrI AUGUSTUS 3'-UTR 562999 563096 0.8 + . transcript_id "g83.t1"; gene_id "g83"; >! chrI AUGUSTUS 3'-UTR 564153 564368 0.58 + . transcript_id "g83.t1"; gene_id "g83"; >--- 3485,3486 ---- >! chrI AUGUSTUS 3'-UTR 562999 563096 0.7 + . transcript_id "g83.t1"; gene_id "g83"; >! chrI AUGUSTUS 3'-UTR 564153 564368 0.6 + . transcript_id "g83.t1"; gene_id "g83"; >*************** >*** 3503,3504 **** >! chrI AUGUSTUS gene 567530 568264 0.1 + . g84 >! chrI AUGUSTUS transcript 567530 568264 0.1 + . g84.t1 >--- 3503,3504 ---- >! chrI AUGUSTUS gene 567530 568264 0.18 + . g84 >! chrI AUGUSTUS transcript 567530 568264 0.18 + . g84.t1 >*************** >*** 3506 **** >! chrI AUGUSTUS 5'-UTR 567530 567806 0.25 + . transcript_id "g84.t1"; gene_id "g84"; >--- 3506 ---- >! chrI AUGUSTUS 5'-UTR 567530 567806 0.35 + . transcript_id "g84.t1"; gene_id "g84"; >*************** >*** 3508 **** >! chrI AUGUSTUS initial 567807 567967 0.32 + 0 transcript_id "g84.t1"; gene_id "g84"; >--- 3508 ---- >! chrI AUGUSTUS initial 567807 567967 0.45 + 0 transcript_id "g84.t1"; gene_id "g84"; >*************** >*** 3513 **** >! chrI AUGUSTUS CDS 567807 567967 0.32 + 0 transcript_id "g84.t1"; gene_id "g84"; >--- 3513 ---- >! chrI AUGUSTUS CDS 567807 567967 0.45 + 0 transcript_id "g84.t1"; gene_id "g84"; >*************** >*** 3517 **** >! chrI AUGUSTUS 3'-UTR 568222 568264 0.38 + . transcript_id "g84.t1"; gene_id "g84"; >--- 3517 ---- >! chrI AUGUSTUS 3'-UTR 568222 568264 0.4 + . transcript_id "g84.t1"; gene_id "g84"; >*************** >*** 3532,3533 **** >! chrI AUGUSTUS gene 568840 570774 0.29 + . g85 >! chrI AUGUSTUS transcript 568840 570774 0.29 + . g85.t1 >--- 3532,3533 ---- >! chrI AUGUSTUS gene 568840 570774 0.33 + . g85 >! chrI AUGUSTUS transcript 568840 570774 0.33 + . g85.t1 >*************** >*** 3535 **** >! chrI AUGUSTUS 5'-UTR 568840 568872 0.35 + . transcript_id "g85.t1"; gene_id "g85"; >--- 3535 ---- >! chrI AUGUSTUS 5'-UTR 568840 568872 0.36 + . transcript_id "g85.t1"; gene_id "g85"; >*************** >*** 3537,3550 **** >! chrI AUGUSTUS initial 568873 568959 0.9 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS internal 569838 570026 0.91 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS internal 570073 570145 0.91 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS internal 570511 570597 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS terminal 570647 570747 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS intron 568960 569837 0.97 + . transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS intron 570027 570072 0.91 + . transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS intron 570146 570510 0.91 + . transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS intron 570598 570646 0.99 + . transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 568873 568959 0.9 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 569838 570026 0.91 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 570073 570145 0.91 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 570511 570597 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 570647 570747 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; >--- 3537,3550 ---- >! chrI AUGUSTUS initial 568873 568959 0.93 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS internal 569838 570026 0.95 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS internal 570073 570145 0.94 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS internal 570511 570597 1 + 2 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS terminal 570647 570747 1 + 2 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS intron 568960 569837 0.98 + . transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS intron 570027 570072 0.94 + . transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS intron 570146 570510 0.95 + . transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS intron 570598 570646 1 + . transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 568873 568959 0.93 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 569838 570026 0.95 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 570073 570145 0.94 + 0 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 570511 570597 1 + 2 transcript_id "g85.t1"; gene_id "g85"; >! chrI AUGUSTUS CDS 570647 570747 1 + 2 transcript_id "g85.t1"; gene_id "g85"; >*************** >*** 3552 **** >! chrI AUGUSTUS 3'-UTR 570748 570774 0.91 + . transcript_id "g85.t1"; gene_id "g85"; >--- 3552 ---- >! chrI AUGUSTUS 3'-UTR 570748 570774 0.89 + . transcript_id "g85.t1"; gene_id "g85"; >*************** >*** 3569,3570 **** >! chrI AUGUSTUS gene 571763 576039 0.21 - . g86 >! chrI AUGUSTUS transcript 571763 576039 0.21 - . g86.t1 >--- 3569,3570 ---- >! chrI AUGUSTUS gene 571763 576039 0.14 - . g86 >! chrI AUGUSTUS transcript 571763 576039 0.14 - . g86.t1 >*************** >*** 3572 **** >! chrI AUGUSTUS 3'-UTR 571763 571988 0.22 - . transcript_id "g86.t1"; gene_id "g86"; >--- 3572 ---- >! chrI AUGUSTUS 3'-UTR 571763 571988 0.17 - . transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3576,3577 **** >! chrI AUGUSTUS internal 572357 572520 1 - 1 transcript_id "g86.t1"; gene_id "g86"; >! chrI AUGUSTUS internal 572571 572737 1 - 0 transcript_id "g86.t1"; gene_id "g86"; >--- 3576,3577 ---- >! chrI AUGUSTUS internal 572357 572520 0.98 - 1 transcript_id "g86.t1"; gene_id "g86"; >! chrI AUGUSTUS internal 572571 572737 0.98 - 0 transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3580 **** >! chrI AUGUSTUS internal 574314 574445 0.99 - 2 transcript_id "g86.t1"; gene_id "g86"; >--- 3580 ---- >! chrI AUGUSTUS internal 574314 574445 1 - 2 transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3583 **** >! chrI AUGUSTUS initial 575842 576007 0.87 - 0 transcript_id "g86.t1"; gene_id "g86"; >--- 3583 ---- >! chrI AUGUSTUS initial 575842 576007 0.92 - 0 transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3586,3587 **** >! chrI AUGUSTUS intron 572521 572570 1 - . transcript_id "g86.t1"; gene_id "g86"; >! chrI AUGUSTUS intron 572738 573741 1 - . transcript_id "g86.t1"; gene_id "g86"; >--- 3586,3587 ---- >! chrI AUGUSTUS intron 572521 572570 0.98 - . transcript_id "g86.t1"; gene_id "g86"; >! chrI AUGUSTUS intron 572738 573741 0.98 - . transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3590 **** >! chrI AUGUSTUS intron 574446 574521 0.99 - . transcript_id "g86.t1"; gene_id "g86"; >--- 3590 ---- >! chrI AUGUSTUS intron 574446 574521 1 - . transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3595,3596 **** >! chrI AUGUSTUS CDS 572357 572520 1 - 1 transcript_id "g86.t1"; gene_id "g86"; >! chrI AUGUSTUS CDS 572571 572737 1 - 0 transcript_id "g86.t1"; gene_id "g86"; >--- 3595,3596 ---- >! chrI AUGUSTUS CDS 572357 572520 0.98 - 1 transcript_id "g86.t1"; gene_id "g86"; >! chrI AUGUSTUS CDS 572571 572737 0.98 - 0 transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3599 **** >! chrI AUGUSTUS CDS 574314 574445 0.99 - 2 transcript_id "g86.t1"; gene_id "g86"; >--- 3599 ---- >! chrI AUGUSTUS CDS 574314 574445 1 - 2 transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3602 **** >! chrI AUGUSTUS CDS 575842 576007 0.87 - 0 transcript_id "g86.t1"; gene_id "g86"; >--- 3602 ---- >! chrI AUGUSTUS CDS 575842 576007 0.92 - 0 transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3604 **** >! chrI AUGUSTUS 5'-UTR 576008 576039 0.86 - . transcript_id "g86.t1"; gene_id "g86"; >--- 3604 ---- >! chrI AUGUSTUS 5'-UTR 576008 576039 0.85 - . transcript_id "g86.t1"; gene_id "g86"; >*************** >*** 3625,3626 **** >! chrI AUGUSTUS gene 581031 586219 0.04 - . g87 >! chrI AUGUSTUS transcript 581031 586219 0.04 - . g87.t1 >--- 3625,3626 ---- >! chrI AUGUSTUS gene 581031 586219 0.08 - . g87 >! chrI AUGUSTUS transcript 581031 586219 0.08 - . g87.t1 >*************** >*** 3628 **** >! chrI AUGUSTUS 3'-UTR 581031 581203 0.3 - . transcript_id "g87.t1"; gene_id "g87"; >--- 3628 ---- >! chrI AUGUSTUS 3'-UTR 581031 581203 0.28 - . transcript_id "g87.t1"; gene_id "g87"; >*************** >*** 3633 **** >! chrI AUGUSTUS initial 585942 586123 0.99 - 0 transcript_id "g87.t1"; gene_id "g87"; >--- 3633 ---- >! chrI AUGUSTUS initial 585942 586123 1 - 0 transcript_id "g87.t1"; gene_id "g87"; >*************** >*** 3640 **** >! chrI AUGUSTUS CDS 585942 586123 0.99 - 0 transcript_id "g87.t1"; gene_id "g87"; >--- 3640 ---- >! chrI AUGUSTUS CDS 585942 586123 1 - 0 transcript_id "g87.t1"; gene_id "g87"; >*************** >*** 3642 **** >! chrI AUGUSTUS 5'-UTR 586124 586219 0.19 - . transcript_id "g87.t1"; gene_id "g87"; >--- 3642 ---- >! chrI AUGUSTUS 5'-UTR 586124 586219 0.27 - . transcript_id "g87.t1"; gene_id "g87"; >*************** >*** 3660,3661 **** >! chrI AUGUSTUS gene 587530 595359 0.02 - . g88 >! chrI AUGUSTUS transcript 587530 595359 0.02 - . g88.t1 >--- 3660,3661 ---- >! chrI AUGUSTUS gene 587530 595359 0.04 - . g88 >! chrI AUGUSTUS transcript 587530 595359 0.04 - . g88.t1 >*************** >*** 3665,3671 **** >! chrI AUGUSTUS terminal 587707 587837 0.98 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 589053 589268 0.52 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 589450 589637 1 - 1 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 589690 589809 0.98 - 1 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 590536 590951 0.99 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 591002 591145 0.59 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 591888 592388 1 - 0 transcript_id "g88.t1"; gene_id "g88"; >--- 3665,3671 ---- >! chrI AUGUSTUS terminal 587707 587837 1 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 589053 589268 0.65 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 589450 589637 0.99 - 1 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 589690 589809 0.99 - 1 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 590536 590951 1 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 591002 591145 0.58 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS internal 591888 592388 0.98 - 0 transcript_id "g88.t1"; gene_id "g88"; >*************** >*** 3673 **** >! chrI AUGUSTUS internal 593496 593770 0.99 - 0 transcript_id "g88.t1"; gene_id "g88"; >--- 3673 ---- >! chrI AUGUSTUS internal 593496 593770 0.98 - 0 transcript_id "g88.t1"; gene_id "g88"; >*************** >*** 3676,3683 **** >! chrI AUGUSTUS internal 594388 594532 0.99 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS initial 595201 595243 0.77 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 587838 589052 0.94 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 589269 589449 0.55 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 589638 589689 0.98 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 589810 590535 0.99 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 590952 591001 0.59 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 591146 591887 0.57 - . transcript_id "g88.t1"; gene_id "g88"; >--- 3676,3683 ---- >! chrI AUGUSTUS internal 594388 594532 1 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS initial 595201 595243 0.84 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 587838 589052 0.96 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 589269 589449 0.67 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 589638 589689 0.99 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 589810 590535 1 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 590952 591001 0.58 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS intron 591146 591887 0.53 - . transcript_id "g88.t1"; gene_id "g88"; >*************** >*** 3685 **** >! chrI AUGUSTUS intron 592617 593495 0.95 - . transcript_id "g88.t1"; gene_id "g88"; >--- 3685 ---- >! chrI AUGUSTUS intron 592617 593495 0.97 - . transcript_id "g88.t1"; gene_id "g88"; >*************** >*** 3689,3696 **** >! chrI AUGUSTUS intron 594533 595200 0.77 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 587707 587837 0.98 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 589053 589268 0.52 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 589450 589637 1 - 1 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 589690 589809 0.98 - 1 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 590536 590951 0.99 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 591002 591145 0.59 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 591888 592388 1 - 0 transcript_id "g88.t1"; gene_id "g88"; >--- 3689,3696 ---- >! chrI AUGUSTUS intron 594533 595200 0.84 - . transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 587707 587837 1 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 589053 589268 0.65 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 589450 589637 0.99 - 1 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 589690 589809 0.99 - 1 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 590536 590951 1 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 591002 591145 0.58 - 0 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 591888 592388 0.98 - 0 transcript_id "g88.t1"; gene_id "g88"; >*************** >*** 3698 **** >! chrI AUGUSTUS CDS 593496 593770 0.99 - 0 transcript_id "g88.t1"; gene_id "g88"; >--- 3698 ---- >! chrI AUGUSTUS CDS 593496 593770 0.98 - 0 transcript_id "g88.t1"; gene_id "g88"; >*************** >*** 3701,3702 **** >! chrI AUGUSTUS CDS 594388 594532 0.99 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 595201 595243 0.77 - 0 transcript_id "g88.t1"; gene_id "g88"; >--- 3701,3702 ---- >! chrI AUGUSTUS CDS 594388 594532 1 - 2 transcript_id "g88.t1"; gene_id "g88"; >! chrI AUGUSTUS CDS 595201 595243 0.84 - 0 transcript_id "g88.t1"; gene_id "g88"; >*************** >*** 3728,3729 **** >! chrI AUGUSTUS gene 599810 602650 0.31 + . g89 >! chrI AUGUSTUS transcript 599810 602650 0.31 + . g89.t1 >--- 3728,3729 ---- >! chrI AUGUSTUS gene 599810 602650 0.2 + . g89 >! chrI AUGUSTUS transcript 599810 602650 0.2 + . g89.t1 >*************** >*** 3731 **** >! chrI AUGUSTUS 5'-UTR 599810 599989 0.34 + . transcript_id "g89.t1"; gene_id "g89"; >--- 3731 ---- >! chrI AUGUSTUS 5'-UTR 599810 599989 0.27 + . transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3733 **** >! chrI AUGUSTUS initial 599990 600035 1 + 0 transcript_id "g89.t1"; gene_id "g89"; >--- 3733 ---- >! chrI AUGUSTUS initial 599990 600035 0.99 + 0 transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3736,3738 **** >! chrI AUGUSTUS internal 600516 600633 0.99 + 1 transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS internal 600998 601427 0.88 + 0 transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS internal 601470 601544 0.87 + 2 transcript_id "g89.t1"; gene_id "g89"; >--- 3736,3738 ---- >! chrI AUGUSTUS internal 600516 600633 1 + 1 transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS internal 600998 601427 0.82 + 0 transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS internal 601470 601544 0.8 + 2 transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3741 **** >! chrI AUGUSTUS internal 602165 602392 0.99 + 1 transcript_id "g89.t1"; gene_id "g89"; >--- 3741 ---- >! chrI AUGUSTUS internal 602165 602392 1 + 1 transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3743 **** >! chrI AUGUSTUS intron 600036 600080 1 + . transcript_id "g89.t1"; gene_id "g89"; >--- 3743 ---- >! chrI AUGUSTUS intron 600036 600080 0.99 + . transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3746,3748 **** >! chrI AUGUSTUS intron 600634 600997 0.99 + . transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS intron 601428 601469 0.87 + . transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS intron 601545 601603 0.99 + . transcript_id "g89.t1"; gene_id "g89"; >--- 3746,3748 ---- >! chrI AUGUSTUS intron 600634 600997 1 + . transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS intron 601428 601469 0.8 + . transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS intron 601545 601603 0.98 + . transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3751,3752 **** >! chrI AUGUSTUS intron 602393 602477 0.99 + . transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS CDS 599990 600035 1 + 0 transcript_id "g89.t1"; gene_id "g89"; >--- 3751,3752 ---- >! chrI AUGUSTUS intron 602393 602477 1 + . transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS CDS 599990 600035 0.99 + 0 transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3755,3757 **** >! chrI AUGUSTUS CDS 600516 600633 0.99 + 1 transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS CDS 600998 601427 0.88 + 0 transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS CDS 601470 601544 0.87 + 2 transcript_id "g89.t1"; gene_id "g89"; >--- 3755,3757 ---- >! chrI AUGUSTUS CDS 600516 600633 1 + 1 transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS CDS 600998 601427 0.82 + 0 transcript_id "g89.t1"; gene_id "g89"; >! chrI AUGUSTUS CDS 601470 601544 0.8 + 2 transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3760 **** >! chrI AUGUSTUS CDS 602165 602392 0.99 + 1 transcript_id "g89.t1"; gene_id "g89"; >--- 3760 ---- >! chrI AUGUSTUS CDS 602165 602392 1 + 1 transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3763 **** >! chrI AUGUSTUS 3'-UTR 602629 602650 1 + . transcript_id "g89.t1"; gene_id "g89"; >--- 3763 ---- >! chrI AUGUSTUS 3'-UTR 602629 602650 0.97 + . transcript_id "g89.t1"; gene_id "g89"; >*************** >*** 3782,3783 **** >! chrI AUGUSTUS gene 604080 605800 0.36 + . g90 >! chrI AUGUSTUS transcript 604080 605800 0.36 + . g90.t1 >--- 3782,3783 ---- >! chrI AUGUSTUS gene 604080 605800 0.27 + . g90 >! chrI AUGUSTUS transcript 604080 605800 0.27 + . g90.t1 >*************** >*** 3785 **** >! chrI AUGUSTUS 5'-UTR 604080 604239 0.8 + . transcript_id "g90.t1"; gene_id "g90"; >--- 3785 ---- >! chrI AUGUSTUS 5'-UTR 604080 604239 0.81 + . transcript_id "g90.t1"; gene_id "g90"; >*************** >*** 3787,3791 **** >! chrI AUGUSTUS initial 604240 604307 0.78 + 0 transcript_id "g90.t1"; gene_id "g90"; >! chrI AUGUSTUS terminal 605394 605592 0.72 + 1 transcript_id "g90.t1"; gene_id "g90"; >! chrI AUGUSTUS intron 604308 605393 0.71 + . transcript_id "g90.t1"; gene_id "g90"; >! chrI AUGUSTUS CDS 604240 604307 0.78 + 0 transcript_id "g90.t1"; gene_id "g90"; >! chrI AUGUSTUS CDS 605394 605592 0.72 + 1 transcript_id "g90.t1"; gene_id "g90"; >--- 3787,3791 ---- >! chrI AUGUSTUS initial 604240 604307 0.9 + 0 transcript_id "g90.t1"; gene_id "g90"; >! chrI AUGUSTUS terminal 605394 605592 0.79 + 1 transcript_id "g90.t1"; gene_id "g90"; >! chrI AUGUSTUS intron 604308 605393 0.78 + . transcript_id "g90.t1"; gene_id "g90"; >! chrI AUGUSTUS CDS 604240 604307 0.9 + 0 transcript_id "g90.t1"; gene_id "g90"; >! chrI AUGUSTUS CDS 605394 605592 0.79 + 1 transcript_id "g90.t1"; gene_id "g90"; >*************** >*** 3793 **** >! chrI AUGUSTUS 3'-UTR 605593 605800 0.37 + . transcript_id "g90.t1"; gene_id "g90"; >--- 3793 ---- >! chrI AUGUSTUS 3'-UTR 605593 605800 0.34 + . transcript_id "g90.t1"; gene_id "g90"; >*************** >*** 3809,3810 **** >! chrI AUGUSTUS gene 606680 613299 0.57 + . g91 >! chrI AUGUSTUS transcript 606680 613299 0.57 + . g91.t1 >--- 3809,3810 ---- >! chrI AUGUSTUS gene 606680 613299 0.51 + . g91 >! chrI AUGUSTUS transcript 606680 613299 0.51 + . g91.t1 >*************** >*** 3812 **** >! chrI AUGUSTUS 5'-UTR 606680 606741 0.66 + . transcript_id "g91.t1"; gene_id "g91"; >--- 3812 ---- >! chrI AUGUSTUS 5'-UTR 606680 606741 0.63 + . transcript_id "g91.t1"; gene_id "g91"; >*************** >*** 3814,3818 **** >! chrI AUGUSTUS initial 606742 606933 0.97 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS internal 607213 607296 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS internal 608189 608309 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS internal 608862 609028 0.99 + 2 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS internal 609890 610309 0.97 + 0 transcript_id "g91.t1"; gene_id "g91"; >--- 3814,3818 ---- >! chrI AUGUSTUS initial 606742 606933 0.96 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS internal 607213 607296 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS internal 608189 608309 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS internal 608862 609028 0.97 + 2 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS internal 609890 610309 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; >*************** >*** 3821,3822 **** >! chrI AUGUSTUS internal 612004 612096 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS terminal 612789 613151 1 + 0 transcript_id "g91.t1"; gene_id "g91"; >--- 3821,3822 ---- >! chrI AUGUSTUS internal 612004 612096 1 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS terminal 612789 613151 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; >*************** >*** 3824,3826 **** >! chrI AUGUSTUS intron 607297 608188 0.99 + . transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS intron 608310 608861 0.98 + . transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS intron 609029 609889 0.99 + . transcript_id "g91.t1"; gene_id "g91"; >--- 3824,3826 ---- >! chrI AUGUSTUS intron 607297 608188 0.98 + . transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS intron 608310 608861 0.99 + . transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS intron 609029 609889 0.98 + . transcript_id "g91.t1"; gene_id "g91"; >*************** >*** 3829,3835 **** >! chrI AUGUSTUS intron 611957 612003 0.99 + . transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS intron 612097 612788 0.99 + . transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 606742 606933 0.97 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 607213 607296 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 608189 608309 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 608862 609028 0.99 + 2 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 609890 610309 0.97 + 0 transcript_id "g91.t1"; gene_id "g91"; >--- 3829,3835 ---- >! chrI AUGUSTUS intron 611957 612003 1 + . transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS intron 612097 612788 1 + . transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 606742 606933 0.96 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 607213 607296 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 608189 608309 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 608862 609028 0.97 + 2 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 609890 610309 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; >*************** >*** 3838,3839 **** >! chrI AUGUSTUS CDS 612004 612096 0.99 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 612789 613151 1 + 0 transcript_id "g91.t1"; gene_id "g91"; >--- 3838,3839 ---- >! chrI AUGUSTUS CDS 612004 612096 1 + 0 transcript_id "g91.t1"; gene_id "g91"; >! chrI AUGUSTUS CDS 612789 613151 0.98 + 0 transcript_id "g91.t1"; gene_id "g91"; >*************** >*** 3841 **** >! chrI AUGUSTUS 3'-UTR 613152 613299 0.94 + . transcript_id "g91.t1"; gene_id "g91"; >--- 3841 ---- >! chrI AUGUSTUS 3'-UTR 613152 613299 0.89 + . transcript_id "g91.t1"; gene_id "g91"; >*************** >*** 3862,3863 **** >! chrI AUGUSTUS gene 613760 617362 0.07 + . g92 >! chrI AUGUSTUS transcript 613760 617362 0.07 + . g92.t1 >--- 3862,3863 ---- >! chrI AUGUSTUS gene 613760 617362 0.06 + . g92 >! chrI AUGUSTUS transcript 613760 617362 0.06 + . g92.t1 >*************** >*** 3865 **** >! chrI AUGUSTUS 5'-UTR 613760 614031 0.24 + . transcript_id "g92.t1"; gene_id "g92"; >--- 3865 ---- >! chrI AUGUSTUS 5'-UTR 613760 614031 0.27 + . transcript_id "g92.t1"; gene_id "g92"; >*************** >*** 3867,3880 **** >! chrI AUGUSTUS initial 614032 614490 0.82 + 0 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS internal 614807 614820 0.45 + 0 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS internal 615078 615155 0.65 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS internal 615849 615938 0.92 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS terminal 617092 617110 0.64 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS intron 614491 614806 0.66 + . transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS intron 614821 615077 0.55 + . transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS intron 615156 615848 0.91 + . transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS intron 615939 617091 0.64 + . transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 614032 614490 0.82 + 0 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 614807 614820 0.45 + 0 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 615078 615155 0.65 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 615849 615938 0.92 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 617092 617110 0.64 + 1 transcript_id "g92.t1"; gene_id "g92"; >--- 3867,3880 ---- >! chrI AUGUSTUS initial 614032 614490 0.8 + 0 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS internal 614807 614820 0.44 + 0 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS internal 615078 615155 0.58 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS internal 615849 615938 0.96 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS terminal 617092 617110 0.6 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS intron 614491 614806 0.64 + . transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS intron 614821 615077 0.52 + . transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS intron 615156 615848 0.88 + . transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS intron 615939 617091 0.59 + . transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 614032 614490 0.8 + 0 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 614807 614820 0.44 + 0 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 615078 615155 0.58 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 615849 615938 0.96 + 1 transcript_id "g92.t1"; gene_id "g92"; >! chrI AUGUSTUS CDS 617092 617110 0.6 + 1 transcript_id "g92.t1"; gene_id "g92"; >*************** >*** 3899,3900 **** >! chrI AUGUSTUS gene 617490 620428 0.88 + . g93 >! chrI AUGUSTUS transcript 617490 620428 0.88 + . g93.t1 >--- 3899,3900 ---- >! chrI AUGUSTUS gene 617490 620428 0.82 + . g93 >! chrI AUGUSTUS transcript 617490 620428 0.82 + . g93.t1 >*************** >*** 3902 **** >! chrI AUGUSTUS 5'-UTR 617490 617560 1 + . transcript_id "g93.t1"; gene_id "g93"; >--- 3902 ---- >! chrI AUGUSTUS 5'-UTR 617490 617560 0.98 + . transcript_id "g93.t1"; gene_id "g93"; >*************** >*** 3908 **** >! chrI AUGUSTUS internal 620058 620192 0.99 + 0 transcript_id "g93.t1"; gene_id "g93"; >--- 3908 ---- >! chrI AUGUSTUS internal 620058 620192 1 + 0 transcript_id "g93.t1"; gene_id "g93"; >*************** >*** 3911 **** >! chrI AUGUSTUS intron 617847 617889 1 + . transcript_id "g93.t1"; gene_id "g93"; >--- 3911 ---- >! chrI AUGUSTUS intron 617847 617889 0.99 + . transcript_id "g93.t1"; gene_id "g93"; >*************** >*** 3914 **** >! chrI AUGUSTUS intron 620193 620239 0.99 + . transcript_id "g93.t1"; gene_id "g93"; >--- 3914 ---- >! chrI AUGUSTUS intron 620193 620239 1 + . transcript_id "g93.t1"; gene_id "g93"; >*************** >*** 3919 **** >! chrI AUGUSTUS CDS 620058 620192 0.99 + 0 transcript_id "g93.t1"; gene_id "g93"; >--- 3919 ---- >! chrI AUGUSTUS CDS 620058 620192 1 + 0 transcript_id "g93.t1"; gene_id "g93"; >*************** >*** 3922 **** >! chrI AUGUSTUS 3'-UTR 620351 620428 0.91 + . transcript_id "g93.t1"; gene_id "g93"; >--- 3922 ---- >! chrI AUGUSTUS 3'-UTR 620351 620428 0.85 + . transcript_id "g93.t1"; gene_id "g93"; >*************** >*** 3941,3942 **** >! chrI AUGUSTUS gene 620530 621860 0.23 + . g94 >! chrI AUGUSTUS transcript 620530 621860 0.23 + . g94.t1 >--- 3941,3942 ---- >! chrI AUGUSTUS gene 620530 621860 0.25 + . g94 >! chrI AUGUSTUS transcript 620530 621860 0.25 + . g94.t1 >*************** >*** 3944 **** >! chrI AUGUSTUS 5'-UTR 620530 620659 0.48 + . transcript_id "g94.t1"; gene_id "g94"; >--- 3944 ---- >! chrI AUGUSTUS 5'-UTR 620530 620659 0.56 + . transcript_id "g94.t1"; gene_id "g94"; >*************** >*** 3946 **** >! chrI AUGUSTUS initial 620660 620824 0.99 + 0 transcript_id "g94.t1"; gene_id "g94"; >--- 3946 ---- >! chrI AUGUSTUS initial 620660 620824 1 + 0 transcript_id "g94.t1"; gene_id "g94"; >*************** >*** 3953 **** >! chrI AUGUSTUS CDS 620660 620824 0.99 + 0 transcript_id "g94.t1"; gene_id "g94"; >--- 3953 ---- >! chrI AUGUSTUS CDS 620660 620824 1 + 0 transcript_id "g94.t1"; gene_id "g94"; >*************** >*** 3958 **** >! chrI AUGUSTUS 3'-UTR 621736 621860 0.46 + . transcript_id "g94.t1"; gene_id "g94"; >--- 3958 ---- >! chrI AUGUSTUS 3'-UTR 621736 621860 0.47 + . transcript_id "g94.t1"; gene_id "g94"; >*************** >*** 3976,3977 **** >! chrI AUGUSTUS gene 621920 623160 0.16 + . g95 >! chrI AUGUSTUS transcript 621920 623160 0.16 + . g95.t1 >--- 3976,3977 ---- >! chrI AUGUSTUS gene 621920 623160 0.18 + . g95 >! chrI AUGUSTUS transcript 621920 623160 0.18 + . g95.t1 >*************** >*** 3979 **** >! chrI AUGUSTUS 5'-UTR 621920 621957 0.26 + . transcript_id "g95.t1"; gene_id "g95"; >--- 3979 ---- >! chrI AUGUSTUS 5'-UTR 621920 621957 0.3 + . transcript_id "g95.t1"; gene_id "g95"; >*************** >*** 3981,3982 **** >! chrI AUGUSTUS initial 621958 622015 0.47 + 0 transcript_id "g95.t1"; gene_id "g95"; >! chrI AUGUSTUS internal 622319 622630 0.56 + 2 transcript_id "g95.t1"; gene_id "g95"; >--- 3981,3982 ---- >! chrI AUGUSTUS initial 621958 622015 0.43 + 0 transcript_id "g95.t1"; gene_id "g95"; >! chrI AUGUSTUS internal 622319 622630 0.52 + 2 transcript_id "g95.t1"; gene_id "g95"; >*************** >*** 3984,3987 **** >! chrI AUGUSTUS intron 622016 622318 0.56 + . transcript_id "g95.t1"; gene_id "g95"; >! chrI AUGUSTUS intron 622631 622893 1 + . transcript_id "g95.t1"; gene_id "g95"; >! chrI AUGUSTUS CDS 621958 622015 0.47 + 0 transcript_id "g95.t1"; gene_id "g95"; >! chrI AUGUSTUS CDS 622319 622630 0.56 + 2 transcript_id "g95.t1"; gene_id "g95"; >--- 3984,3987 ---- >! chrI AUGUSTUS intron 622016 622318 0.52 + . transcript_id "g95.t1"; gene_id "g95"; >! chrI AUGUSTUS intron 622631 622893 0.99 + . transcript_id "g95.t1"; gene_id "g95"; >! chrI AUGUSTUS CDS 621958 622015 0.43 + 0 transcript_id "g95.t1"; gene_id "g95"; >! chrI AUGUSTUS CDS 622319 622630 0.52 + 2 transcript_id "g95.t1"; gene_id "g95"; >*************** >*** 3990 **** >! chrI AUGUSTUS 3'-UTR 623118 623160 0.67 + . transcript_id "g95.t1"; gene_id "g95"; >--- 3990 ---- >! chrI AUGUSTUS 3'-UTR 623118 623160 0.72 + . transcript_id "g95.t1"; gene_id "g95"; >*************** >*** 4007,4008 **** >! chrI AUGUSTUS gene 623176 628369 0.42 - . g96 >! chrI AUGUSTUS transcript 623176 628369 0.42 - . g96.t1 >--- 4007,4008 ---- >! chrI AUGUSTUS gene 623176 628369 0.39 - . g96 >! chrI AUGUSTUS transcript 623176 628369 0.39 - . g96.t1 >*************** >*** 4010 **** >! chrI AUGUSTUS 3'-UTR 623176 623360 0.8 - . transcript_id "g96.t1"; gene_id "g96"; >--- 4010 ---- >! chrI AUGUSTUS 3'-UTR 623176 623360 0.78 - . transcript_id "g96.t1"; gene_id "g96"; >*************** >*** 4013,4014 **** >! chrI AUGUSTUS internal 623645 623956 0.76 - 0 transcript_id "g96.t1"; gene_id "g96"; >! chrI AUGUSTUS internal 624016 624544 0.99 - 1 transcript_id "g96.t1"; gene_id "g96"; >--- 4013,4014 ---- >! chrI AUGUSTUS internal 623645 623956 0.8 - 0 transcript_id "g96.t1"; gene_id "g96"; >! chrI AUGUSTUS internal 624016 624544 1 - 1 transcript_id "g96.t1"; gene_id "g96"; >*************** >*** 4019,4020 **** >! chrI AUGUSTUS intron 623430 623644 0.76 - . transcript_id "g96.t1"; gene_id "g96"; >! chrI AUGUSTUS intron 623957 624015 0.99 - . transcript_id "g96.t1"; gene_id "g96"; >--- 4019,4020 ---- >! chrI AUGUSTUS intron 623430 623644 0.8 - . transcript_id "g96.t1"; gene_id "g96"; >! chrI AUGUSTUS intron 623957 624015 1 - . transcript_id "g96.t1"; gene_id "g96"; >*************** >*** 4026,4027 **** >! chrI AUGUSTUS CDS 623645 623956 0.76 - 0 transcript_id "g96.t1"; gene_id "g96"; >! chrI AUGUSTUS CDS 624016 624544 0.99 - 1 transcript_id "g96.t1"; gene_id "g96"; >--- 4026,4027 ---- >! chrI AUGUSTUS CDS 623645 623956 0.8 - 0 transcript_id "g96.t1"; gene_id "g96"; >! chrI AUGUSTUS CDS 624016 624544 1 - 1 transcript_id "g96.t1"; gene_id "g96"; >*************** >*** 4033 **** >! chrI AUGUSTUS 5'-UTR 628114 628369 0.68 - . transcript_id "g96.t1"; gene_id "g96"; >--- 4033 ---- >! chrI AUGUSTUS 5'-UTR 628114 628369 0.65 - . transcript_id "g96.t1"; gene_id "g96"; >*************** >*** 4056,4057 **** >! chrI AUGUSTUS gene 628650 630504 0.1 + . g97 >! chrI AUGUSTUS transcript 628650 630504 0.1 + . g97.t1 >--- 4056,4057 ---- >! chrI AUGUSTUS gene 628650 630504 0.15 + . g97 >! chrI AUGUSTUS transcript 628650 630504 0.15 + . g97.t1 >*************** >*** 4059 **** >! chrI AUGUSTUS 5'-UTR 628650 628681 0.16 + . transcript_id "g97.t1"; gene_id "g97"; >--- 4059 ---- >! chrI AUGUSTUS 5'-UTR 628650 628681 0.25 + . transcript_id "g97.t1"; gene_id "g97"; >*************** >*** 4061 **** >! chrI AUGUSTUS initial 628682 628725 0.43 + 0 transcript_id "g97.t1"; gene_id "g97"; >--- 4061 ---- >! chrI AUGUSTUS initial 628682 628725 0.41 + 0 transcript_id "g97.t1"; gene_id "g97"; >*************** >*** 4063,4065 **** >! chrI AUGUSTUS internal 629949 630078 1 + 2 transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS internal 630127 630160 0.85 + 1 transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS internal 630205 630270 0.85 + 0 transcript_id "g97.t1"; gene_id "g97"; >--- 4063,4065 ---- >! chrI AUGUSTUS internal 629949 630078 0.98 + 2 transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS internal 630127 630160 0.87 + 1 transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS internal 630205 630270 0.86 + 0 transcript_id "g97.t1"; gene_id "g97"; >*************** >*** 4067,4072 **** >! chrI AUGUSTUS intron 628726 629746 0.46 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS intron 629848 629948 0.77 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS intron 630079 630126 0.85 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS intron 630161 630204 0.85 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS intron 630271 630325 1 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS CDS 628682 628725 0.43 + 0 transcript_id "g97.t1"; gene_id "g97"; >--- 4067,4072 ---- >! chrI AUGUSTUS intron 628726 629746 0.43 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS intron 629848 629948 0.8 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS intron 630079 630126 0.87 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS intron 630161 630204 0.86 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS intron 630271 630325 0.98 + . transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS CDS 628682 628725 0.41 + 0 transcript_id "g97.t1"; gene_id "g97"; >*************** >*** 4074,4076 **** >! chrI AUGUSTUS CDS 629949 630078 1 + 2 transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS CDS 630127 630160 0.85 + 1 transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS CDS 630205 630270 0.85 + 0 transcript_id "g97.t1"; gene_id "g97"; >--- 4074,4076 ---- >! chrI AUGUSTUS CDS 629949 630078 0.98 + 2 transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS CDS 630127 630160 0.87 + 1 transcript_id "g97.t1"; gene_id "g97"; >! chrI AUGUSTUS CDS 630205 630270 0.86 + 0 transcript_id "g97.t1"; gene_id "g97"; >*************** >*** 4079 **** >! chrI AUGUSTUS 3'-UTR 630437 630504 0.78 + . transcript_id "g97.t1"; gene_id "g97"; >--- 4079 ---- >! chrI AUGUSTUS 3'-UTR 630437 630504 0.84 + . transcript_id "g97.t1"; gene_id "g97"; >*************** >*** 4095,4096 **** >! chrI AUGUSTUS gene 630580 637456 0.04 + . g98 >! chrI AUGUSTUS transcript 630580 637456 0.04 + . g98.t1 >--- 4095,4096 ---- >! chrI AUGUSTUS gene 630580 637456 0.03 + . g98 >! chrI AUGUSTUS transcript 630580 637456 0.03 + . g98.t1 >*************** >*** 4098 **** >! chrI AUGUSTUS 5'-UTR 630580 630623 0.86 + . transcript_id "g98.t1"; gene_id "g98"; >--- 4098 ---- >! chrI AUGUSTUS 5'-UTR 630580 630623 0.78 + . transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4101,4104 **** >! chrI AUGUSTUS internal 631039 631163 1 + 2 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS internal 631209 631426 0.78 + 0 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS internal 632041 632105 0.25 + 1 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS internal 632429 632514 0.37 + 2 transcript_id "g98.t1"; gene_id "g98"; >--- 4101,4104 ---- >! chrI AUGUSTUS internal 631039 631163 0.99 + 2 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS internal 631209 631426 0.77 + 0 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS internal 632041 632105 0.21 + 1 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS internal 632429 632514 0.43 + 2 transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4106 **** >! chrI AUGUSTUS internal 633686 633967 1 + 1 transcript_id "g98.t1"; gene_id "g98"; >--- 4106 ---- >! chrI AUGUSTUS internal 633686 633967 0.99 + 1 transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4110 **** >! chrI AUGUSTUS terminal 637189 637417 0.27 + 1 transcript_id "g98.t1"; gene_id "g98"; >--- 4110 ---- >! chrI AUGUSTUS terminal 637189 637417 0.33 + 1 transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4112,4115 **** >! chrI AUGUSTUS intron 631164 631208 1 + . transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS intron 631427 632040 0.29 + . transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS intron 632106 632428 0.17 + . transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS intron 632515 632969 0.78 + . transcript_id "g98.t1"; gene_id "g98"; >--- 4112,4115 ---- >! chrI AUGUSTUS intron 631164 631208 0.99 + . transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS intron 631427 632040 0.23 + . transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS intron 632106 632428 0.16 + . transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS intron 632515 632969 0.83 + . transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4117 **** >! chrI AUGUSTUS intron 633968 634338 1 + . transcript_id "g98.t1"; gene_id "g98"; >--- 4117 ---- >! chrI AUGUSTUS intron 633968 634338 0.99 + . transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4122,4125 **** >! chrI AUGUSTUS CDS 631039 631163 1 + 2 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS CDS 631209 631426 0.78 + 0 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS CDS 632041 632105 0.25 + 1 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS CDS 632429 632514 0.37 + 2 transcript_id "g98.t1"; gene_id "g98"; >--- 4122,4125 ---- >! chrI AUGUSTUS CDS 631039 631163 0.99 + 2 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS CDS 631209 631426 0.77 + 0 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS CDS 632041 632105 0.21 + 1 transcript_id "g98.t1"; gene_id "g98"; >! chrI AUGUSTUS CDS 632429 632514 0.43 + 2 transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4127 **** >! chrI AUGUSTUS CDS 633686 633967 1 + 1 transcript_id "g98.t1"; gene_id "g98"; >--- 4127 ---- >! chrI AUGUSTUS CDS 633686 633967 0.99 + 1 transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4131 **** >! chrI AUGUSTUS CDS 637189 637417 0.27 + 1 transcript_id "g98.t1"; gene_id "g98"; >--- 4131 ---- >! chrI AUGUSTUS CDS 637189 637417 0.33 + 1 transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4133 **** >! chrI AUGUSTUS 3'-UTR 637418 637456 0.21 + . transcript_id "g98.t1"; gene_id "g98"; >--- 4133 ---- >! chrI AUGUSTUS 3'-UTR 637418 637456 0.25 + . transcript_id "g98.t1"; gene_id "g98"; >*************** >*** 4153,4154 **** >! chrI AUGUSTUS gene 642710 643779 0.54 + . g99 >! chrI AUGUSTUS transcript 642710 643779 0.54 + . g99.t1 >--- 4153,4154 ---- >! chrI AUGUSTUS gene 642710 643779 0.5 + . g99 >! chrI AUGUSTUS transcript 642710 643779 0.5 + . g99.t1 >*************** >*** 4156 **** >! chrI AUGUSTUS 5'-UTR 642710 642740 0.57 + . transcript_id "g99.t1"; gene_id "g99"; >--- 4156 ---- >! chrI AUGUSTUS 5'-UTR 642710 642740 0.54 + . transcript_id "g99.t1"; gene_id "g99"; >*************** >*** 4161 **** >! chrI AUGUSTUS internal 643129 643314 0.99 + 0 transcript_id "g99.t1"; gene_id "g99"; >--- 4161 ---- >! chrI AUGUSTUS internal 643129 643314 0.98 + 0 transcript_id "g99.t1"; gene_id "g99"; >*************** >*** 4170 **** >! chrI AUGUSTUS CDS 643129 643314 0.99 + 0 transcript_id "g99.t1"; gene_id "g99"; >--- 4170 ---- >! chrI AUGUSTUS CDS 643129 643314 0.98 + 0 transcript_id "g99.t1"; gene_id "g99"; >*************** >*** 4173 **** >! chrI AUGUSTUS 3'-UTR 643705 643779 0.96 + . transcript_id "g99.t1"; gene_id "g99"; >--- 4173 ---- >! chrI AUGUSTUS 3'-UTR 643705 643779 0.93 + . transcript_id "g99.t1"; gene_id "g99"; >*************** >*** 4189,4190 **** >! chrI AUGUSTUS gene 645270 648079 0.62 - . g100 >! chrI AUGUSTUS transcript 645270 648079 0.62 - . g100.t1 >--- 4189,4190 ---- >! chrI AUGUSTUS gene 645270 648079 0.5 - . g100 >! chrI AUGUSTUS transcript 645270 648079 0.5 - . g100.t1 >*************** >*** 4206 **** >! chrI AUGUSTUS 5'-UTR 648040 648079 0.64 - . transcript_id "g100.t1"; gene_id "g100"; >--- 4206 ---- >! chrI AUGUSTUS 5'-UTR 648040 648079 0.52 - . transcript_id "g100.t1"; gene_id "g100"; >*************** >*** 4224,4225 **** >! chrI AUGUSTUS gene 650656 656119 0.06 - . g101 >! chrI AUGUSTUS transcript 650656 656119 0.06 - . g101.t1 >--- 4224,4225 ---- >! chrI AUGUSTUS gene 650656 656119 0.05 - . g101 >! chrI AUGUSTUS transcript 650656 656119 0.05 - . g101.t1 >*************** >*** 4227 **** >! chrI AUGUSTUS 3'-UTR 650656 650737 0.66 - . transcript_id "g101.t1"; gene_id "g101"; >--- 4227 ---- >! chrI AUGUSTUS 3'-UTR 650656 650737 0.5 - . transcript_id "g101.t1"; gene_id "g101"; >*************** >*** 4229,4232 **** >! chrI AUGUSTUS terminal 650738 650814 0.83 - 2 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS internal 650861 650987 0.64 - 0 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS internal 651187 651448 0.74 - 1 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS internal 651492 651622 0.14 - 0 transcript_id "g101.t1"; gene_id "g101"; >--- 4229,4232 ---- >! chrI AUGUSTUS terminal 650738 650814 0.78 - 2 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS internal 650861 650987 0.63 - 0 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS internal 651187 651448 0.73 - 1 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS internal 651492 651622 0.12 - 0 transcript_id "g101.t1"; gene_id "g101"; >*************** >*** 4234,4241 **** >! chrI AUGUSTUS intron 650815 650860 0.83 - . transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS intron 650988 651186 0.63 - . transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS intron 651449 651491 0.96 - . transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS intron 651623 656054 0.08 - . transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS CDS 650738 650814 0.83 - 2 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS CDS 650861 650987 0.64 - 0 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS CDS 651187 651448 0.74 - 1 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS CDS 651492 651622 0.14 - 0 transcript_id "g101.t1"; gene_id "g101"; >--- 4234,4241 ---- >! chrI AUGUSTUS intron 650815 650860 0.77 - . transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS intron 650988 651186 0.62 - . transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS intron 651449 651491 0.91 - . transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS intron 651623 656054 0.11 - . transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS CDS 650738 650814 0.78 - 2 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS CDS 650861 650987 0.63 - 0 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS CDS 651187 651448 0.73 - 1 transcript_id "g101.t1"; gene_id "g101"; >! chrI AUGUSTUS CDS 651492 651622 0.12 - 0 transcript_id "g101.t1"; gene_id "g101"; >*************** >*** 4244 **** >! chrI AUGUSTUS 5'-UTR 656082 656119 0.13 - . transcript_id "g101.t1"; gene_id "g101"; >--- 4244 ---- >! chrI AUGUSTUS 5'-UTR 656082 656119 0.12 - . transcript_id "g101.t1"; gene_id "g101"; >*************** >*** 4264 **** >! chrI AUGUSTUS 5'-UTR 663120 663176 0.31 + . transcript_id "g102.t1"; gene_id "g102"; >--- 4264 ---- >! chrI AUGUSTUS 5'-UTR 663120 663176 0.26 + . transcript_id "g102.t1"; gene_id "g102"; >*************** >*** 4266,4273 **** >! chrI AUGUSTUS initial 663177 663199 0.3 + 0 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS internal 663718 663827 0.23 + 1 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS terminal 664931 665010 0.4 + 2 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS intron 663200 663717 0.23 + . transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS intron 663828 664930 0.22 + . transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS CDS 663177 663199 0.3 + 0 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS CDS 663718 663827 0.23 + 1 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS CDS 664931 665010 0.4 + 2 transcript_id "g102.t1"; gene_id "g102"; >--- 4266,4273 ---- >! chrI AUGUSTUS initial 663177 663199 0.28 + 0 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS internal 663718 663827 0.26 + 1 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS terminal 664931 665010 0.35 + 2 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS intron 663200 663717 0.26 + . transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS intron 663828 664930 0.26 + . transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS CDS 663177 663199 0.28 + 0 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS CDS 663718 663827 0.26 + 1 transcript_id "g102.t1"; gene_id "g102"; >! chrI AUGUSTUS CDS 664931 665010 0.35 + 2 transcript_id "g102.t1"; gene_id "g102"; >*************** >*** 4275 **** >! chrI AUGUSTUS 3'-UTR 665011 665263 0.8 + . transcript_id "g102.t1"; gene_id "g102"; >--- 4275 ---- >! chrI AUGUSTUS 3'-UTR 665011 665263 0.72 + . transcript_id "g102.t1"; gene_id "g102"; >*************** >*** 4291,4292 **** >! chrI AUGUSTUS gene 668040 672438 0.07 + . g103 >! chrI AUGUSTUS transcript 668040 672438 0.07 + . g103.t1 >--- 4291,4292 ---- >! chrI AUGUSTUS gene 668040 672438 0.15 + . g103 >! chrI AUGUSTUS transcript 668040 672438 0.15 + . g103.t1 >*************** >*** 4294 **** >! chrI AUGUSTUS 5'-UTR 668040 668168 0.4 + . transcript_id "g103.t1"; gene_id "g103"; >--- 4294 ---- >! chrI AUGUSTUS 5'-UTR 668040 668168 0.47 + . transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 4296 **** >! chrI AUGUSTUS initial 668169 668260 0.96 + 0 transcript_id "g103.t1"; gene_id "g103"; >--- 4296 ---- >! chrI AUGUSTUS initial 668169 668260 0.97 + 0 transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 4299 **** >! chrI AUGUSTUS internal 669632 669748 0.77 + 0 transcript_id "g103.t1"; gene_id "g103"; >--- 4299 ---- >! chrI AUGUSTUS internal 669632 669748 0.76 + 0 transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 4304 **** >! chrI AUGUSTUS intron 668261 668408 0.99 + . transcript_id "g103.t1"; gene_id "g103"; >--- 4304 ---- >! chrI AUGUSTUS intron 668261 668408 0.98 + . transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 4306 **** >! chrI AUGUSTUS intron 669213 669631 0.99 + . transcript_id "g103.t1"; gene_id "g103"; >--- 4306 ---- >! chrI AUGUSTUS intron 669213 669631 0.97 + . transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 4311 **** >! chrI AUGUSTUS CDS 668169 668260 0.96 + 0 transcript_id "g103.t1"; gene_id "g103"; >--- 4311 ---- >! chrI AUGUSTUS CDS 668169 668260 0.97 + 0 transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 4314 **** >! chrI AUGUSTUS CDS 669632 669748 0.77 + 0 transcript_id "g103.t1"; gene_id "g103"; >--- 4314 ---- >! chrI AUGUSTUS CDS 669632 669748 0.76 + 0 transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 4320 **** >! chrI AUGUSTUS 3'-UTR 672013 672438 0.43 + . transcript_id "g103.t1"; gene_id "g103"; >--- 4320 ---- >! chrI AUGUSTUS 3'-UTR 672013 672438 0.41 + . transcript_id "g103.t1"; gene_id "g103"; >*************** >*** 4339,4340 **** >! chrI AUGUSTUS gene 672943 682759 0.1 - . g104 >! chrI AUGUSTUS transcript 672943 682759 0.1 - . g104.t1 >--- 4339,4340 ---- >! chrI AUGUSTUS gene 672943 682759 0.15 - . g104 >! chrI AUGUSTUS transcript 672943 682759 0.15 - . g104.t1 >*************** >*** 4342 **** >! chrI AUGUSTUS 3'-UTR 672943 673245 0.75 - . transcript_id "g104.t1"; gene_id "g104"; >--- 4342 ---- >! chrI AUGUSTUS 3'-UTR 672943 673245 0.73 - . transcript_id "g104.t1"; gene_id "g104"; >*************** >*** 4346 **** >! chrI AUGUSTUS internal 674644 674887 0.95 - 0 transcript_id "g104.t1"; gene_id "g104"; >--- 4346 ---- >! chrI AUGUSTUS internal 674644 674887 0.99 - 0 transcript_id "g104.t1"; gene_id "g104"; >*************** >*** 4352,4354 **** >! chrI AUGUSTUS internal 679802 679891 0.94 - 0 transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS internal 680556 680666 0.9 - 0 transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS initial 682535 682729 0.81 - 0 transcript_id "g104.t1"; gene_id "g104"; >--- 4352,4354 ---- >! chrI AUGUSTUS internal 679802 679891 0.97 - 0 transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS internal 680556 680666 0.91 - 0 transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS initial 682535 682729 0.92 - 0 transcript_id "g104.t1"; gene_id "g104"; >*************** >*** 4356 **** >! chrI AUGUSTUS intron 674466 674643 0.95 - . transcript_id "g104.t1"; gene_id "g104"; >--- 4356 ---- >! chrI AUGUSTUS intron 674466 674643 0.99 - . transcript_id "g104.t1"; gene_id "g104"; >*************** >*** 4362,4364 **** >! chrI AUGUSTUS intron 679330 679801 0.87 - . transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS intron 679892 680555 0.86 - . transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS intron 680667 682534 0.96 - . transcript_id "g104.t1"; gene_id "g104"; >--- 4362,4364 ---- >! chrI AUGUSTUS intron 679330 679801 0.83 - . transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS intron 679892 680555 0.91 - . transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS intron 680667 682534 0.99 - . transcript_id "g104.t1"; gene_id "g104"; >*************** >*** 4367 **** >! chrI AUGUSTUS CDS 674644 674887 0.95 - 0 transcript_id "g104.t1"; gene_id "g104"; >--- 4367 ---- >! chrI AUGUSTUS CDS 674644 674887 0.99 - 0 transcript_id "g104.t1"; gene_id "g104"; >*************** >*** 4373,4375 **** >! chrI AUGUSTUS CDS 679802 679891 0.94 - 0 transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS CDS 680556 680666 0.9 - 0 transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS CDS 682535 682729 0.81 - 0 transcript_id "g104.t1"; gene_id "g104"; >--- 4373,4375 ---- >! chrI AUGUSTUS CDS 679802 679891 0.97 - 0 transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS CDS 680556 680666 0.91 - 0 transcript_id "g104.t1"; gene_id "g104"; >! chrI AUGUSTUS CDS 682535 682729 0.92 - 0 transcript_id "g104.t1"; gene_id "g104"; >*************** >*** 4377 **** >! chrI AUGUSTUS 5'-UTR 682730 682759 0.24 - . transcript_id "g104.t1"; gene_id "g104"; >--- 4377 ---- >! chrI AUGUSTUS 5'-UTR 682730 682759 0.33 - . transcript_id "g104.t1"; gene_id "g104"; >*************** >*** 4400,4401 **** >! chrI AUGUSTUS gene 686642 689467 0.37 - . g105 >! chrI AUGUSTUS transcript 686642 689467 0.37 - . g105.t1 >--- 4400,4401 ---- >! chrI AUGUSTUS gene 686642 689467 0.29 - . g105 >! chrI AUGUSTUS transcript 686642 689467 0.29 - . g105.t1 >*************** >*** 4403 **** >! chrI AUGUSTUS 3'-UTR 686642 686698 1 - . transcript_id "g105.t1"; gene_id "g105"; >--- 4403 ---- >! chrI AUGUSTUS 3'-UTR 686642 686698 0.95 - . transcript_id "g105.t1"; gene_id "g105"; >*************** >*** 4407 **** >! chrI AUGUSTUS internal 687951 687974 0.64 - 2 transcript_id "g105.t1"; gene_id "g105"; >--- 4407 ---- >! chrI AUGUSTUS internal 687951 687974 0.67 - 2 transcript_id "g105.t1"; gene_id "g105"; >*************** >*** 4411,4412 **** >! chrI AUGUSTUS intron 687895 687950 0.64 - . transcript_id "g105.t1"; gene_id "g105"; >! chrI AUGUSTUS intron 687975 689086 0.64 - . transcript_id "g105.t1"; gene_id "g105"; >--- 4411,4412 ---- >! chrI AUGUSTUS intron 687895 687950 0.67 - . transcript_id "g105.t1"; gene_id "g105"; >! chrI AUGUSTUS intron 687975 689086 0.67 - . transcript_id "g105.t1"; gene_id "g105"; >*************** >*** 4416 **** >! chrI AUGUSTUS CDS 687951 687974 0.64 - 2 transcript_id "g105.t1"; gene_id "g105"; >--- 4416 ---- >! chrI AUGUSTUS CDS 687951 687974 0.67 - 2 transcript_id "g105.t1"; gene_id "g105"; >*************** >*** 4420 **** >! chrI AUGUSTUS 5'-UTR 689417 689467 0.54 - . transcript_id "g105.t1"; gene_id "g105"; >--- 4420 ---- >! chrI AUGUSTUS 5'-UTR 689417 689467 0.45 - . transcript_id "g105.t1"; gene_id "g105"; >*************** >*** 4438,4439 **** >! chrI AUGUSTUS gene 692078 692518 0.63 + . g106 >! chrI AUGUSTUS transcript 692078 692518 0.63 + . g106.t1 >--- 4438,4439 ---- >! chrI AUGUSTUS gene 692078 692518 0.68 + . g106 >! chrI AUGUSTUS transcript 692078 692518 0.68 + . g106.t1 >*************** >*** 4441 **** >! chrI AUGUSTUS 5'-UTR 692078 692109 0.96 + . transcript_id "g106.t1"; gene_id "g106"; >--- 4441 ---- >! chrI AUGUSTUS 5'-UTR 692078 692109 0.98 + . transcript_id "g106.t1"; gene_id "g106"; >*************** >*** 4446 **** >! chrI AUGUSTUS 3'-UTR 692401 692518 0.66 + . transcript_id "g106.t1"; gene_id "g106"; >--- 4446 ---- >! chrI AUGUSTUS 3'-UTR 692401 692518 0.69 + . transcript_id "g106.t1"; gene_id "g106"; >*************** >*** 4461,4462 **** >! chrI AUGUSTUS gene 692578 694218 0.11 + . g107 >! chrI AUGUSTUS transcript 692578 694218 0.11 + . g107.t1 >--- 4461,4462 ---- >! chrI AUGUSTUS gene 692578 694218 0.16 + . g107 >! chrI AUGUSTUS transcript 692578 694218 0.16 + . g107.t1 >*************** >*** 4464 **** >! chrI AUGUSTUS 5'-UTR 692578 692757 0.29 + . transcript_id "g107.t1"; gene_id "g107"; >--- 4464 ---- >! chrI AUGUSTUS 5'-UTR 692578 692757 0.37 + . transcript_id "g107.t1"; gene_id "g107"; >*************** >*** 4466 **** >! chrI AUGUSTUS initial 692758 692825 0.99 + 0 transcript_id "g107.t1"; gene_id "g107"; >--- 4466 ---- >! chrI AUGUSTUS initial 692758 692825 0.98 + 0 transcript_id "g107.t1"; gene_id "g107"; >*************** >*** 4468,4470 **** >! chrI AUGUSTUS internal 693043 693129 0.67 + 0 transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS internal 693176 693292 0.67 + 0 transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS internal 693353 693642 0.87 + 0 transcript_id "g107.t1"; gene_id "g107"; >--- 4468,4470 ---- >! chrI AUGUSTUS internal 693043 693129 0.69 + 0 transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS internal 693176 693292 0.69 + 0 transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS internal 693353 693642 0.8 + 0 transcript_id "g107.t1"; gene_id "g107"; >*************** >*** 4474 **** >! chrI AUGUSTUS intron 693130 693175 0.67 + . transcript_id "g107.t1"; gene_id "g107"; >--- 4474 ---- >! chrI AUGUSTUS intron 693130 693175 0.69 + . transcript_id "g107.t1"; gene_id "g107"; >*************** >*** 4476,4477 **** >! chrI AUGUSTUS intron 693643 693727 0.86 + . transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS CDS 692758 692825 0.99 + 0 transcript_id "g107.t1"; gene_id "g107"; >--- 4476,4477 ---- >! chrI AUGUSTUS intron 693643 693727 0.79 + . transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS CDS 692758 692825 0.98 + 0 transcript_id "g107.t1"; gene_id "g107"; >*************** >*** 4479,4481 **** >! chrI AUGUSTUS CDS 693043 693129 0.67 + 0 transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS CDS 693176 693292 0.67 + 0 transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS CDS 693353 693642 0.87 + 0 transcript_id "g107.t1"; gene_id "g107"; >--- 4479,4481 ---- >! chrI AUGUSTUS CDS 693043 693129 0.69 + 0 transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS CDS 693176 693292 0.69 + 0 transcript_id "g107.t1"; gene_id "g107"; >! chrI AUGUSTUS CDS 693353 693642 0.8 + 0 transcript_id "g107.t1"; gene_id "g107"; >*************** >*** 4484 **** >! chrI AUGUSTUS 3'-UTR 694086 694218 0.8 + . transcript_id "g107.t1"; gene_id "g107"; >--- 4484 ---- >! chrI AUGUSTUS 3'-UTR 694086 694218 0.68 + . transcript_id "g107.t1"; gene_id "g107"; >*************** >*** 4502,4503 **** >! chrI AUGUSTUS gene 697278 699999 0.52 + . g108 >! chrI AUGUSTUS transcript 697278 699999 0.52 + . g108.t1 >--- 4502,4503 ---- >! chrI AUGUSTUS gene 697278 699999 0.54 + . g108 >! chrI AUGUSTUS transcript 697278 699999 0.54 + . g108.t1 >*************** >*** 4505 **** >! chrI AUGUSTUS 5'-UTR 697278 697440 0.83 + . transcript_id "g108.t1"; gene_id "g108"; >--- 4505 ---- >! chrI AUGUSTUS 5'-UTR 697278 697440 0.72 + . transcript_id "g108.t1"; gene_id "g108"; >*************** >*** 4508,4511 **** >! chrI AUGUSTUS internal 697626 697681 0.98 + 0 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS internal 698042 698330 0.85 + 1 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS internal 698835 698928 1 + 0 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS internal 698977 699088 1 + 2 transcript_id "g108.t1"; gene_id "g108"; >--- 4508,4511 ---- >! chrI AUGUSTUS internal 697626 697681 1 + 0 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS internal 698042 698330 0.89 + 1 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS internal 698835 698928 0.98 + 0 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS internal 698977 699088 0.98 + 2 transcript_id "g108.t1"; gene_id "g108"; >*************** >*** 4513 **** >! chrI AUGUSTUS terminal 699813 699956 0.93 + 0 transcript_id "g108.t1"; gene_id "g108"; >--- 4513 ---- >! chrI AUGUSTUS terminal 699813 699956 0.92 + 0 transcript_id "g108.t1"; gene_id "g108"; >*************** >*** 4515 **** >! chrI AUGUSTUS intron 697682 698041 0.84 + . transcript_id "g108.t1"; gene_id "g108"; >--- 4515 ---- >! chrI AUGUSTUS intron 697682 698041 0.89 + . transcript_id "g108.t1"; gene_id "g108"; >*************** >*** 4517,4519 **** >! chrI AUGUSTUS intron 698929 698976 1 + . transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS intron 699089 699551 1 + . transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS intron 699760 699812 0.99 + . transcript_id "g108.t1"; gene_id "g108"; >--- 4517,4519 ---- >! chrI AUGUSTUS intron 698929 698976 0.98 + . transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS intron 699089 699551 0.99 + . transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS intron 699760 699812 1 + . transcript_id "g108.t1"; gene_id "g108"; >*************** >*** 4521,4524 **** >! chrI AUGUSTUS CDS 697626 697681 0.98 + 0 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS CDS 698042 698330 0.85 + 1 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS CDS 698835 698928 1 + 0 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS CDS 698977 699088 1 + 2 transcript_id "g108.t1"; gene_id "g108"; >--- 4521,4524 ---- >! chrI AUGUSTUS CDS 697626 697681 1 + 0 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS CDS 698042 698330 0.89 + 1 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS CDS 698835 698928 0.98 + 0 transcript_id "g108.t1"; gene_id "g108"; >! chrI AUGUSTUS CDS 698977 699088 0.98 + 2 transcript_id "g108.t1"; gene_id "g108"; >*************** >*** 4526 **** >! chrI AUGUSTUS CDS 699813 699956 0.93 + 0 transcript_id "g108.t1"; gene_id "g108"; >--- 4526 ---- >! chrI AUGUSTUS CDS 699813 699956 0.92 + 0 transcript_id "g108.t1"; gene_id "g108"; >*************** >*** 4528 **** >! chrI AUGUSTUS 3'-UTR 699957 699999 0.74 + . transcript_id "g108.t1"; gene_id "g108"; >--- 4528 ---- >! chrI AUGUSTUS 3'-UTR 699957 699999 0.83 + . transcript_id "g108.t1"; gene_id "g108"; >*************** >*** 4546,4547 **** >! chrI AUGUSTUS gene 700408 702212 0.21 + . g109 >! chrI AUGUSTUS transcript 700408 702212 0.21 + . g109.t1 >--- 4546,4547 ---- >! chrI AUGUSTUS gene 700408 702212 0.24 + . g109 >! chrI AUGUSTUS transcript 700408 702212 0.24 + . g109.t1 >*************** >*** 4549 **** >! chrI AUGUSTUS 5'-UTR 700408 700504 0.52 + . transcript_id "g109.t1"; gene_id "g109"; >--- 4549 ---- >! chrI AUGUSTUS 5'-UTR 700408 700504 0.53 + . transcript_id "g109.t1"; gene_id "g109"; >*************** >*** 4551,4553 **** >! chrI AUGUSTUS initial 700505 700603 0.83 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS internal 700885 701682 0.69 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS internal 701731 701943 0.73 + 0 transcript_id "g109.t1"; gene_id "g109"; >--- 4551,4553 ---- >! chrI AUGUSTUS initial 700505 700603 0.84 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS internal 700885 701682 0.77 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS internal 701731 701943 0.81 + 0 transcript_id "g109.t1"; gene_id "g109"; >*************** >*** 4555,4556 **** >! chrI AUGUSTUS intron 700604 700884 0.94 + . transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS intron 701683 701730 0.73 + . transcript_id "g109.t1"; gene_id "g109"; >--- 4555,4556 ---- >! chrI AUGUSTUS intron 700604 700884 0.93 + . transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS intron 701683 701730 0.81 + . transcript_id "g109.t1"; gene_id "g109"; >*************** >*** 4558,4560 **** >! chrI AUGUSTUS CDS 700505 700603 0.83 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS CDS 700885 701682 0.69 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS CDS 701731 701943 0.73 + 0 transcript_id "g109.t1"; gene_id "g109"; >--- 4558,4560 ---- >! chrI AUGUSTUS CDS 700505 700603 0.84 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS CDS 700885 701682 0.77 + 0 transcript_id "g109.t1"; gene_id "g109"; >! chrI AUGUSTUS CDS 701731 701943 0.81 + 0 transcript_id "g109.t1"; gene_id "g109"; >*************** >*** 4563 **** >! chrI AUGUSTUS 3'-UTR 702084 702212 0.54 + . transcript_id "g109.t1"; gene_id "g109"; >--- 4563 ---- >! chrI AUGUSTUS 3'-UTR 702084 702212 0.59 + . transcript_id "g109.t1"; gene_id "g109"; >*************** >*** 4581,4582 **** >! chrI AUGUSTUS gene 707228 717547 0.26 + . g110 >! chrI AUGUSTUS transcript 707228 717547 0.26 + . g110.t1 >--- 4581,4582 ---- >! chrI AUGUSTUS gene 707228 717547 0.18 + . g110 >! chrI AUGUSTUS transcript 707228 717547 0.18 + . g110.t1 >*************** >*** 4586,4591 **** >! chrI AUGUSTUS initial 707348 707404 0.46 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 708103 708207 0.97 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 709921 710067 0.99 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 711122 711406 0.82 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 712440 712549 0.82 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 713852 714073 1 + 1 transcript_id "g110.t1"; gene_id "g110"; >--- 4586,4591 ---- >! chrI AUGUSTUS initial 707348 707404 0.44 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 708103 708207 0.95 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 709921 710067 0.98 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 711122 711406 0.7 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 712440 712549 0.7 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS internal 713852 714073 0.99 + 1 transcript_id "g110.t1"; gene_id "g110"; >*************** >*** 4593 **** >! chrI AUGUSTUS internal 714729 715055 0.92 + 0 transcript_id "g110.t1"; gene_id "g110"; >--- 4593 ---- >! chrI AUGUSTUS internal 714729 715055 0.96 + 0 transcript_id "g110.t1"; gene_id "g110"; >*************** >*** 4595,4598 **** >! chrI AUGUSTUS intron 707405 708102 0.46 + . transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS intron 708208 709920 1 + . transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS intron 710068 711121 0.93 + . transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS intron 711407 712439 0.82 + . transcript_id "g110.t1"; gene_id "g110"; >--- 4595,4598 ---- >! chrI AUGUSTUS intron 707405 708102 0.44 + . transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS intron 708208 709920 0.99 + . transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS intron 710068 711121 0.91 + . transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS intron 711407 712439 0.7 + . transcript_id "g110.t1"; gene_id "g110"; >*************** >*** 4600 **** >! chrI AUGUSTUS intron 714074 714120 1 + . transcript_id "g110.t1"; gene_id "g110"; >--- 4600 ---- >! chrI AUGUSTUS intron 714074 714120 0.99 + . transcript_id "g110.t1"; gene_id "g110"; >*************** >*** 4602,4608 **** >! chrI AUGUSTUS intron 715056 717230 0.95 + . transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 707348 707404 0.46 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 708103 708207 0.97 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 709921 710067 0.99 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 711122 711406 0.82 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 712440 712549 0.82 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 713852 714073 1 + 1 transcript_id "g110.t1"; gene_id "g110"; >--- 4602,4608 ---- >! chrI AUGUSTUS intron 715056 717230 0.94 + . transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 707348 707404 0.44 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 708103 708207 0.95 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 709921 710067 0.98 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 711122 711406 0.7 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 712440 712549 0.7 + 0 transcript_id "g110.t1"; gene_id "g110"; >! chrI AUGUSTUS CDS 713852 714073 0.99 + 1 transcript_id "g110.t1"; gene_id "g110"; >*************** >*** 4610 **** >! chrI AUGUSTUS CDS 714729 715055 0.92 + 0 transcript_id "g110.t1"; gene_id "g110"; >--- 4610 ---- >! chrI AUGUSTUS CDS 714729 715055 0.96 + 0 transcript_id "g110.t1"; gene_id "g110"; >*************** >*** 4613 **** >! chrI AUGUSTUS 3'-UTR 717357 717547 0.93 + . transcript_id "g110.t1"; gene_id "g110"; >--- 4613 ---- >! chrI AUGUSTUS 3'-UTR 717357 717547 0.88 + . transcript_id "g110.t1"; gene_id "g110"; >*************** >*** 4633,4634 **** >! chrI AUGUSTUS gene 718026 726827 0.12 - . g111 >! chrI AUGUSTUS transcript 718026 726827 0.12 - . g111.t1 >--- 4633,4634 ---- >! chrI AUGUSTUS gene 718026 726827 0.13 - . g111 >! chrI AUGUSTUS transcript 718026 726827 0.13 - . g111.t1 >*************** >*** 4636 **** >! chrI AUGUSTUS 3'-UTR 718026 718128 0.27 - . transcript_id "g111.t1"; gene_id "g111"; >--- 4636 ---- >! chrI AUGUSTUS 3'-UTR 718026 718128 0.31 - . transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 4639 **** >! chrI AUGUSTUS internal 719105 719268 0.94 - 0 transcript_id "g111.t1"; gene_id "g111"; >--- 4639 ---- >! chrI AUGUSTUS internal 719105 719268 0.95 - 0 transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 4645,4646 **** >! chrI AUGUSTUS internal 725987 726071 0.88 - 2 transcript_id "g111.t1"; gene_id "g111"; >! chrI AUGUSTUS internal 726140 726267 0.98 - 1 transcript_id "g111.t1"; gene_id "g111"; >--- 4645,4646 ---- >! chrI AUGUSTUS internal 725987 726071 0.9 - 2 transcript_id "g111.t1"; gene_id "g111"; >! chrI AUGUSTUS internal 726140 726267 1 - 1 transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 4649,4650 **** >! chrI AUGUSTUS intron 718331 719104 1 - . transcript_id "g111.t1"; gene_id "g111"; >! chrI AUGUSTUS intron 719269 720670 0.93 - . transcript_id "g111.t1"; gene_id "g111"; >--- 4649,4650 ---- >! chrI AUGUSTUS intron 718331 719104 0.99 - . transcript_id "g111.t1"; gene_id "g111"; >! chrI AUGUSTUS intron 719269 720670 0.96 - . transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 4654 **** >! chrI AUGUSTUS intron 725403 725758 0.99 - . transcript_id "g111.t1"; gene_id "g111"; >--- 4654 ---- >! chrI AUGUSTUS intron 725403 725758 1 - . transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 4656 **** >! chrI AUGUSTUS intron 726072 726139 0.86 - . transcript_id "g111.t1"; gene_id "g111"; >--- 4656 ---- >! chrI AUGUSTUS intron 726072 726139 0.9 - . transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 4660 **** >! chrI AUGUSTUS CDS 719105 719268 0.94 - 0 transcript_id "g111.t1"; gene_id "g111"; >--- 4660 ---- >! chrI AUGUSTUS CDS 719105 719268 0.95 - 0 transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 4666,4667 **** >! chrI AUGUSTUS CDS 725987 726071 0.88 - 2 transcript_id "g111.t1"; gene_id "g111"; >! chrI AUGUSTUS CDS 726140 726267 0.98 - 1 transcript_id "g111.t1"; gene_id "g111"; >--- 4666,4667 ---- >! chrI AUGUSTUS CDS 725987 726071 0.9 - 2 transcript_id "g111.t1"; gene_id "g111"; >! chrI AUGUSTUS CDS 726140 726267 1 - 1 transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 4671 **** >! chrI AUGUSTUS 5'-UTR 726653 726827 0.35 - . transcript_id "g111.t1"; gene_id "g111"; >--- 4671 ---- >! chrI AUGUSTUS 5'-UTR 726653 726827 0.39 - . transcript_id "g111.t1"; gene_id "g111"; >*************** >*** 4693,4694 **** >! chrI AUGUSTUS gene 726978 727385 0.38 + . g112 >! chrI AUGUSTUS transcript 726978 727385 0.38 + . g112.t1 >--- 4693,4694 ---- >! chrI AUGUSTUS gene 726978 727385 0.3 + . g112 >! chrI AUGUSTUS transcript 726978 727385 0.3 + . g112.t1 >*************** >*** 4696 **** >! chrI AUGUSTUS 5'-UTR 726978 727018 0.58 + . transcript_id "g112.t1"; gene_id "g112"; >--- 4696 ---- >! chrI AUGUSTUS 5'-UTR 726978 727018 0.44 + . transcript_id "g112.t1"; gene_id "g112"; >*************** >*** 4704 **** >! chrI AUGUSTUS 3'-UTR 727306 727385 0.65 + . transcript_id "g112.t1"; gene_id "g112"; >--- 4704 ---- >! chrI AUGUSTUS 3'-UTR 727306 727385 0.62 + . transcript_id "g112.t1"; gene_id "g112"; >*************** >*** 4718,4719 **** >! chrI AUGUSTUS gene 729958 731454 0.66 + . g113 >! chrI AUGUSTUS transcript 729958 731454 0.66 + . g113.t1 >--- 4718,4719 ---- >! chrI AUGUSTUS gene 729958 731454 0.64 + . g113 >! chrI AUGUSTUS transcript 729958 731454 0.64 + . g113.t1 >*************** >*** 4721 **** >! chrI AUGUSTUS 5'-UTR 729958 730010 0.69 + . transcript_id "g113.t1"; gene_id "g113"; >--- 4721 ---- >! chrI AUGUSTUS 5'-UTR 729958 730010 0.67 + . transcript_id "g113.t1"; gene_id "g113"; >*************** >*** 4745,4746 **** >! chrI AUGUSTUS gene 731538 735342 0.31 + . g114 >! chrI AUGUSTUS transcript 731538 735342 0.31 + . g114.t1 >--- 4745,4746 ---- >! chrI AUGUSTUS gene 731538 735342 0.27 + . g114 >! chrI AUGUSTUS transcript 731538 735342 0.27 + . g114.t1 >*************** >*** 4748 **** >! chrI AUGUSTUS 5'-UTR 731538 731564 0.53 + . transcript_id "g114.t1"; gene_id "g114"; >--- 4748 ---- >! chrI AUGUSTUS 5'-UTR 731538 731564 0.58 + . transcript_id "g114.t1"; gene_id "g114"; >*************** >*** 4759 **** >! chrI AUGUSTUS 3'-UTR 735315 735342 0.5 + . transcript_id "g114.t1"; gene_id "g114"; >--- 4759 ---- >! chrI AUGUSTUS 3'-UTR 735315 735342 0.48 + . transcript_id "g114.t1"; gene_id "g114"; >*************** >*** 4780 **** >! chrI AUGUSTUS 3'-UTR 735347 735546 0.49 - . transcript_id "g115.t1"; gene_id "g115"; >--- 4780 ---- >! chrI AUGUSTUS 3'-UTR 735347 735546 0.46 - . transcript_id "g115.t1"; gene_id "g115"; >*************** >*** 4783,4784 **** >! chrI AUGUSTUS internal 737442 737735 0.99 - 0 transcript_id "g115.t1"; gene_id "g115"; >! chrI AUGUSTUS internal 738019 738264 1 - 0 transcript_id "g115.t1"; gene_id "g115"; >--- 4783,4784 ---- >! chrI AUGUSTUS internal 737442 737735 1 - 0 transcript_id "g115.t1"; gene_id "g115"; >! chrI AUGUSTUS internal 738019 738264 0.99 - 0 transcript_id "g115.t1"; gene_id "g115"; >*************** >*** 4786 **** >! chrI AUGUSTUS initial 739591 739612 0.32 - 0 transcript_id "g115.t1"; gene_id "g115"; >--- 4786 ---- >! chrI AUGUSTUS initial 739591 739612 0.4 - 0 transcript_id "g115.t1"; gene_id "g115"; >*************** >*** 4789,4790 **** >! chrI AUGUSTUS intron 738265 738491 1 - . transcript_id "g115.t1"; gene_id "g115"; >! chrI AUGUSTUS intron 738644 739590 0.61 - . transcript_id "g115.t1"; gene_id "g115"; >--- 4789,4790 ---- >! chrI AUGUSTUS intron 738265 738491 0.99 - . transcript_id "g115.t1"; gene_id "g115"; >! chrI AUGUSTUS intron 738644 739590 0.72 - . transcript_id "g115.t1"; gene_id "g115"; >*************** >*** 4792,4793 **** >! chrI AUGUSTUS CDS 737442 737735 0.99 - 0 transcript_id "g115.t1"; gene_id "g115"; >! chrI AUGUSTUS CDS 738019 738264 1 - 0 transcript_id "g115.t1"; gene_id "g115"; >--- 4792,4793 ---- >! chrI AUGUSTUS CDS 737442 737735 1 - 0 transcript_id "g115.t1"; gene_id "g115"; >! chrI AUGUSTUS CDS 738019 738264 0.99 - 0 transcript_id "g115.t1"; gene_id "g115"; >*************** >*** 4795 **** >! chrI AUGUSTUS CDS 739591 739612 0.32 - 0 transcript_id "g115.t1"; gene_id "g115"; >--- 4795 ---- >! chrI AUGUSTUS CDS 739591 739612 0.4 - 0 transcript_id "g115.t1"; gene_id "g115"; >*************** >*** 4797 **** >! chrI AUGUSTUS 5'-UTR 739613 739647 0.14 - . transcript_id "g115.t1"; gene_id "g115"; >--- 4797 ---- >! chrI AUGUSTUS 5'-UTR 739613 739647 0.22 - . transcript_id "g115.t1"; gene_id "g115"; >*************** >*** 4818,4819 **** >! chrI AUGUSTUS gene 741279 742867 0.38 - . g116 >! chrI AUGUSTUS transcript 741279 742867 0.38 - . g116.t1 >--- 4818,4819 ---- >! chrI AUGUSTUS gene 741279 742867 0.41 - . g116 >! chrI AUGUSTUS transcript 741279 742867 0.41 - . g116.t1 >*************** >*** 4821 **** >! chrI AUGUSTUS 3'-UTR 741279 741396 0.54 - . transcript_id "g116.t1"; gene_id "g116"; >--- 4821 ---- >! chrI AUGUSTUS 3'-UTR 741279 741396 0.66 - . transcript_id "g116.t1"; gene_id "g116"; >*************** >*** 4823,4830 **** >! chrI AUGUSTUS terminal 741397 741511 0.68 - 1 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS internal 742398 742509 0.67 - 2 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS initial 742558 742738 0.65 - 0 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS intron 741512 742397 0.99 - . transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS intron 742510 742557 0.65 - . transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS CDS 741397 741511 0.68 - 1 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS CDS 742398 742509 0.67 - 2 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS CDS 742558 742738 0.65 - 0 transcript_id "g116.t1"; gene_id "g116"; >--- 4823,4830 ---- >! chrI AUGUSTUS terminal 741397 741511 0.74 - 1 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS internal 742398 742509 0.71 - 2 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS initial 742558 742738 0.71 - 0 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS intron 741512 742397 1 - . transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS intron 742510 742557 0.72 - . transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS CDS 741397 741511 0.74 - 1 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS CDS 742398 742509 0.71 - 2 transcript_id "g116.t1"; gene_id "g116"; >! chrI AUGUSTUS CDS 742558 742738 0.71 - 0 transcript_id "g116.t1"; gene_id "g116"; >*************** >*** 4832 **** >! chrI AUGUSTUS 5'-UTR 742739 742867 0.55 - . transcript_id "g116.t1"; gene_id "g116"; >--- 4832 ---- >! chrI AUGUSTUS 5'-UTR 742739 742867 0.49 - . transcript_id "g116.t1"; gene_id "g116"; >*************** >*** 4851 **** >! chrI AUGUSTUS 3'-UTR 755249 755818 0.73 - . transcript_id "g117.t1"; gene_id "g117"; >--- 4851 ---- >! chrI AUGUSTUS 3'-UTR 755249 755818 0.67 - . transcript_id "g117.t1"; gene_id "g117"; >*************** >*** 4854 **** >! chrI AUGUSTUS internal 756168 756611 1 - 0 transcript_id "g117.t1"; gene_id "g117"; >--- 4854 ---- >! chrI AUGUSTUS internal 756168 756611 0.99 - 0 transcript_id "g117.t1"; gene_id "g117"; >*************** >*** 4856 **** >! chrI AUGUSTUS internal 757385 757497 0.99 - 2 transcript_id "g117.t1"; gene_id "g117"; >--- 4856 ---- >! chrI AUGUSTUS internal 757385 757497 1 - 2 transcript_id "g117.t1"; gene_id "g117"; >*************** >*** 4862,4863 **** >! chrI AUGUSTUS intron 757498 757545 0.99 - . transcript_id "g117.t1"; gene_id "g117"; >! chrI AUGUSTUS intron 757838 757893 1 - . transcript_id "g117.t1"; gene_id "g117"; >--- 4862,4863 ---- >! chrI AUGUSTUS intron 757498 757545 1 - . transcript_id "g117.t1"; gene_id "g117"; >! chrI AUGUSTUS intron 757838 757893 0.99 - . transcript_id "g117.t1"; gene_id "g117"; >*************** >*** 4865 **** >! chrI AUGUSTUS CDS 756168 756611 1 - 0 transcript_id "g117.t1"; gene_id "g117"; >--- 4865 ---- >! chrI AUGUSTUS CDS 756168 756611 0.99 - 0 transcript_id "g117.t1"; gene_id "g117"; >*************** >*** 4867 **** >! chrI AUGUSTUS CDS 757385 757497 0.99 - 2 transcript_id "g117.t1"; gene_id "g117"; >--- 4867 ---- >! chrI AUGUSTUS CDS 757385 757497 1 - 2 transcript_id "g117.t1"; gene_id "g117"; >*************** >*** 4892,4893 **** >! chrI AUGUSTUS gene 759027 760467 0.33 - . g118 >! chrI AUGUSTUS transcript 759027 760467 0.33 - . g118.t1 >--- 4892,4893 ---- >! chrI AUGUSTUS gene 759027 760467 0.35 - . g118 >! chrI AUGUSTUS transcript 759027 760467 0.35 - . g118.t1 >*************** >*** 4895 **** >! chrI AUGUSTUS 3'-UTR 759027 759074 0.86 - . transcript_id "g118.t1"; gene_id "g118"; >--- 4895 ---- >! chrI AUGUSTUS 3'-UTR 759027 759074 0.74 - . transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 4898 **** >! chrI AUGUSTUS internal 759314 759683 1 - 1 transcript_id "g118.t1"; gene_id "g118"; >--- 4898 ---- >! chrI AUGUSTUS internal 759314 759683 0.99 - 1 transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 4901 **** >! chrI AUGUSTUS intron 759246 759313 1 - . transcript_id "g118.t1"; gene_id "g118"; >--- 4901 ---- >! chrI AUGUSTUS intron 759246 759313 0.99 - . transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 4903 **** >! chrI AUGUSTUS intron 759972 760326 0.85 - . transcript_id "g118.t1"; gene_id "g118"; >--- 4903 ---- >! chrI AUGUSTUS intron 759972 760326 0.88 - . transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 4905 **** >! chrI AUGUSTUS CDS 759314 759683 1 - 1 transcript_id "g118.t1"; gene_id "g118"; >--- 4905 ---- >! chrI AUGUSTUS CDS 759314 759683 0.99 - 1 transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 4909 **** >! chrI AUGUSTUS 5'-UTR 760399 760467 0.38 - . transcript_id "g118.t1"; gene_id "g118"; >--- 4909 ---- >! chrI AUGUSTUS 5'-UTR 760399 760467 0.47 - . transcript_id "g118.t1"; gene_id "g118"; >*************** >*** 4927,4928 **** >! chrI AUGUSTUS gene 761007 776097 0.15 - . g119 >! chrI AUGUSTUS transcript 761007 776097 0.15 - . g119.t1 >--- 4927,4928 ---- >! chrI AUGUSTUS gene 761007 776097 0.17 - . g119 >! chrI AUGUSTUS transcript 761007 776097 0.17 - . g119.t1 >*************** >*** 4930 **** >! chrI AUGUSTUS 3'-UTR 761007 761318 0.59 - . transcript_id "g119.t1"; gene_id "g119"; >--- 4930 ---- >! chrI AUGUSTUS 3'-UTR 761007 761318 0.53 - . transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4932,4933 **** >! chrI AUGUSTUS terminal 761319 761514 0.99 - 1 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS internal 762148 762393 0.98 - 1 transcript_id "g119.t1"; gene_id "g119"; >--- 4932,4933 ---- >! chrI AUGUSTUS terminal 761319 761514 1 - 1 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS internal 762148 762393 1 - 1 transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4938,4939 **** >! chrI AUGUSTUS internal 768649 768872 1 - 1 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS internal 769762 769873 1 - 2 transcript_id "g119.t1"; gene_id "g119"; >--- 4938,4939 ---- >! chrI AUGUSTUS internal 768649 768872 0.98 - 1 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS internal 769762 769873 0.98 - 2 transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4941 **** >! chrI AUGUSTUS internal 772771 772985 0.99 - 1 transcript_id "g119.t1"; gene_id "g119"; >--- 4941 ---- >! chrI AUGUSTUS internal 772771 772985 1 - 1 transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4945,4946 **** >! chrI AUGUSTUS initial 775946 776020 0.45 - 0 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS intron 761515 762147 0.98 - . transcript_id "g119.t1"; gene_id "g119"; >--- 4945,4946 ---- >! chrI AUGUSTUS initial 775946 776020 0.54 - 0 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS intron 761515 762147 1 - . transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4950,4952 **** >! chrI AUGUSTUS intron 765898 767170 0.96 - . transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS intron 767831 768648 1 - . transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS intron 768873 769761 1 - . transcript_id "g119.t1"; gene_id "g119"; >--- 4950,4952 ---- >! chrI AUGUSTUS intron 765898 767170 0.98 - . transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS intron 767831 768648 0.98 - . transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS intron 768873 769761 0.98 - . transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4954 **** >! chrI AUGUSTUS intron 771372 772770 0.99 - . transcript_id "g119.t1"; gene_id "g119"; >--- 4954 ---- >! chrI AUGUSTUS intron 771372 772770 1 - . transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4958,4960 **** >! chrI AUGUSTUS intron 775896 775945 0.97 - . transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS CDS 761319 761514 0.99 - 1 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS CDS 762148 762393 0.98 - 1 transcript_id "g119.t1"; gene_id "g119"; >--- 4958,4960 ---- >! chrI AUGUSTUS intron 775896 775945 1 - . transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS CDS 761319 761514 1 - 1 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS CDS 762148 762393 1 - 1 transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4965,4966 **** >! chrI AUGUSTUS CDS 768649 768872 1 - 1 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS CDS 769762 769873 1 - 2 transcript_id "g119.t1"; gene_id "g119"; >--- 4965,4966 ---- >! chrI AUGUSTUS CDS 768649 768872 0.98 - 1 transcript_id "g119.t1"; gene_id "g119"; >! chrI AUGUSTUS CDS 769762 769873 0.98 - 2 transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4968 **** >! chrI AUGUSTUS CDS 772771 772985 0.99 - 1 transcript_id "g119.t1"; gene_id "g119"; >--- 4968 ---- >! chrI AUGUSTUS CDS 772771 772985 1 - 1 transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4972 **** >! chrI AUGUSTUS CDS 775946 776020 0.45 - 0 transcript_id "g119.t1"; gene_id "g119"; >--- 4972 ---- >! chrI AUGUSTUS CDS 775946 776020 0.54 - 0 transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 4974 **** >! chrI AUGUSTUS 5'-UTR 776021 776097 0.23 - . transcript_id "g119.t1"; gene_id "g119"; >--- 4974 ---- >! chrI AUGUSTUS 5'-UTR 776021 776097 0.26 - . transcript_id "g119.t1"; gene_id "g119"; >*************** >*** 5004,5005 **** >! chrI AUGUSTUS gene 776391 778787 0.31 - . g120 >! chrI AUGUSTUS transcript 776391 778787 0.31 - . g120.t1 >--- 5004,5005 ---- >! chrI AUGUSTUS gene 776391 778787 0.28 - . g120 >! chrI AUGUSTUS transcript 776391 778787 0.28 - . g120.t1 >*************** >*** 5010,5013 **** >! chrI AUGUSTUS internal 776988 777099 1 - 1 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS internal 777149 777450 0.96 - 0 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS initial 778518 778718 0.86 - 0 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS intron 776551 776987 1 - . transcript_id "g120.t1"; gene_id "g120"; >--- 5010,5013 ---- >! chrI AUGUSTUS internal 776988 777099 0.98 - 1 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS internal 777149 777450 0.98 - 0 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS initial 778518 778718 0.88 - 0 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS intron 776551 776987 0.98 - . transcript_id "g120.t1"; gene_id "g120"; >*************** >*** 5017,5019 **** >! chrI AUGUSTUS CDS 776988 777099 1 - 1 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS CDS 777149 777450 0.96 - 0 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS CDS 778518 778718 0.86 - 0 transcript_id "g120.t1"; gene_id "g120"; >--- 5017,5019 ---- >! chrI AUGUSTUS CDS 776988 777099 0.98 - 1 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS CDS 777149 777450 0.98 - 0 transcript_id "g120.t1"; gene_id "g120"; >! chrI AUGUSTUS CDS 778518 778718 0.88 - 0 transcript_id "g120.t1"; gene_id "g120"; >*************** >*** 5021 **** >! chrI AUGUSTUS 5'-UTR 778719 778787 0.55 - . transcript_id "g120.t1"; gene_id "g120"; >--- 5021 ---- >! chrI AUGUSTUS 5'-UTR 778719 778787 0.5 - . transcript_id "g120.t1"; gene_id "g120"; >*************** >*** 5038,5039 **** >! chrI AUGUSTUS gene 780819 784447 0.35 - . g121 >! chrI AUGUSTUS transcript 780819 784447 0.35 - . g121.t1 >--- 5038,5039 ---- >! chrI AUGUSTUS gene 780819 784447 0.26 - . g121 >! chrI AUGUSTUS transcript 780819 784447 0.26 - . g121.t1 >*************** >*** 5043 **** >! chrI AUGUSTUS terminal 780851 781718 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; >--- 5043 ---- >! chrI AUGUSTUS terminal 780851 781718 1 - 1 transcript_id "g121.t1"; gene_id "g121"; >*************** >*** 5047,5052 **** >! chrI AUGUSTUS internal 782646 782791 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 782841 783056 1 - 1 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 783098 783173 1 - 2 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 783223 783361 0.97 - 0 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 783525 783589 0.95 - 2 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 783643 783776 0.91 - 1 transcript_id "g121.t1"; gene_id "g121"; >--- 5047,5052 ---- >! chrI AUGUSTUS internal 782646 782791 0.96 - 1 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 782841 783056 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 783098 783173 0.99 - 2 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 783223 783361 0.98 - 0 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 783525 783589 0.94 - 2 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS internal 783643 783776 0.93 - 1 transcript_id "g121.t1"; gene_id "g121"; >*************** >*** 5058 **** >! chrI AUGUSTUS intron 782589 782645 0.99 - . transcript_id "g121.t1"; gene_id "g121"; >--- 5058 ---- >! chrI AUGUSTUS intron 782589 782645 0.96 - . transcript_id "g121.t1"; gene_id "g121"; >*************** >*** 5060,5061 **** >! chrI AUGUSTUS intron 783057 783097 1 - . transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS intron 783174 783222 0.99 - . transcript_id "g121.t1"; gene_id "g121"; >--- 5060,5061 ---- >! chrI AUGUSTUS intron 783057 783097 0.99 - . transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS intron 783174 783222 1 - . transcript_id "g121.t1"; gene_id "g121"; >*************** >*** 5063 **** >! chrI AUGUSTUS intron 783590 783642 0.89 - . transcript_id "g121.t1"; gene_id "g121"; >--- 5063 ---- >! chrI AUGUSTUS intron 783590 783642 0.91 - . transcript_id "g121.t1"; gene_id "g121"; >*************** >*** 5066 **** >! chrI AUGUSTUS CDS 780851 781718 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; >--- 5066 ---- >! chrI AUGUSTUS CDS 780851 781718 1 - 1 transcript_id "g121.t1"; gene_id "g121"; >*************** >*** 5070,5075 **** >! chrI AUGUSTUS CDS 782646 782791 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 782841 783056 1 - 1 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 783098 783173 1 - 2 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 783223 783361 0.97 - 0 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 783525 783589 0.95 - 2 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 783643 783776 0.91 - 1 transcript_id "g121.t1"; gene_id "g121"; >--- 5070,5075 ---- >! chrI AUGUSTUS CDS 782646 782791 0.96 - 1 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 782841 783056 0.99 - 1 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 783098 783173 0.99 - 2 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 783223 783361 0.98 - 0 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 783525 783589 0.94 - 2 transcript_id "g121.t1"; gene_id "g121"; >! chrI AUGUSTUS CDS 783643 783776 0.93 - 1 transcript_id "g121.t1"; gene_id "g121"; >*************** >*** 5079 **** >! chrI AUGUSTUS 5'-UTR 784273 784447 0.45 - . transcript_id "g121.t1"; gene_id "g121"; >--- 5079 ---- >! chrI AUGUSTUS 5'-UTR 784273 784447 0.36 - . transcript_id "g121.t1"; gene_id "g121"; >*************** >*** 5101,5102 **** >! chrI AUGUSTUS gene 784623 785837 0.62 - . g122 >! chrI AUGUSTUS transcript 784623 785837 0.62 - . g122.t1 >--- 5101,5102 ---- >! chrI AUGUSTUS gene 784623 785837 0.72 - . g122 >! chrI AUGUSTUS transcript 784623 785837 0.72 - . g122.t1 >*************** >*** 5104 **** >! chrI AUGUSTUS 3'-UTR 784623 784667 0.69 - . transcript_id "g122.t1"; gene_id "g122"; >--- 5104 ---- >! chrI AUGUSTUS 3'-UTR 784623 784667 0.74 - . transcript_id "g122.t1"; gene_id "g122"; >*************** >*** 5108 **** >! chrI AUGUSTUS initial 785596 785797 0.99 - 0 transcript_id "g122.t1"; gene_id "g122"; >--- 5108 ---- >! chrI AUGUSTUS initial 785596 785797 1 - 0 transcript_id "g122.t1"; gene_id "g122"; >*************** >*** 5113 **** >! chrI AUGUSTUS CDS 785596 785797 0.99 - 0 transcript_id "g122.t1"; gene_id "g122"; >--- 5113 ---- >! chrI AUGUSTUS CDS 785596 785797 1 - 0 transcript_id "g122.t1"; gene_id "g122"; >*************** >*** 5115 **** >! chrI AUGUSTUS 5'-UTR 785798 785837 0.93 - . transcript_id "g122.t1"; gene_id "g122"; >--- 5115 ---- >! chrI AUGUSTUS 5'-UTR 785798 785837 0.97 - . transcript_id "g122.t1"; gene_id "g122"; >*************** >*** 5132,5133 **** >! chrI AUGUSTUS gene 786358 787567 0.2 + . g123 >! chrI AUGUSTUS transcript 786358 787567 0.2 + . g123.t1 >--- 5132,5133 ---- >! chrI AUGUSTUS gene 786358 787567 0.18 + . g123 >! chrI AUGUSTUS transcript 786358 787567 0.18 + . g123.t1 >*************** >*** 5135 **** >! chrI AUGUSTUS 5'-UTR 786358 786387 0.47 + . transcript_id "g123.t1"; gene_id "g123"; >--- 5135 ---- >! chrI AUGUSTUS 5'-UTR 786358 786387 0.31 + . transcript_id "g123.t1"; gene_id "g123"; >*************** >*** 5137,5138 **** >! chrI AUGUSTUS initial 786388 786502 1 + 0 transcript_id "g123.t1"; gene_id "g123"; >! chrI AUGUSTUS internal 786708 787369 1 + 2 transcript_id "g123.t1"; gene_id "g123"; >--- 5137,5138 ---- >! chrI AUGUSTUS initial 786388 786502 0.99 + 0 transcript_id "g123.t1"; gene_id "g123"; >! chrI AUGUSTUS internal 786708 787369 0.99 + 2 transcript_id "g123.t1"; gene_id "g123"; >*************** >*** 5142,5143 **** >! chrI AUGUSTUS CDS 786388 786502 1 + 0 transcript_id "g123.t1"; gene_id "g123"; >! chrI AUGUSTUS CDS 786708 787369 1 + 2 transcript_id "g123.t1"; gene_id "g123"; >--- 5142,5143 ---- >! chrI AUGUSTUS CDS 786388 786502 0.99 + 0 transcript_id "g123.t1"; gene_id "g123"; >! chrI AUGUSTUS CDS 786708 787369 0.99 + 2 transcript_id "g123.t1"; gene_id "g123"; >*************** >*** 5146 **** >! chrI AUGUSTUS 3'-UTR 787514 787567 0.38 + . transcript_id "g123.t1"; gene_id "g123"; >--- 5146 ---- >! chrI AUGUSTUS 3'-UTR 787514 787567 0.46 + . transcript_id "g123.t1"; gene_id "g123"; >*************** >*** 5163,5164 **** >! chrI AUGUSTUS gene 787955 788447 0.32 - . g124 >! chrI AUGUSTUS transcript 787955 788447 0.32 - . g124.t1 >--- 5163,5164 ---- >! chrI AUGUSTUS gene 787955 788447 0.33 - . g124 >! chrI AUGUSTUS transcript 787955 788447 0.33 - . g124.t1 >*************** >*** 5166 **** >! chrI AUGUSTUS 3'-UTR 787955 787981 0.39 - . transcript_id "g124.t1"; gene_id "g124"; >--- 5166 ---- >! chrI AUGUSTUS 3'-UTR 787955 787981 0.37 - . transcript_id "g124.t1"; gene_id "g124"; >*************** >*** 5171 **** >! chrI AUGUSTUS 5'-UTR 788420 788447 0.89 - . transcript_id "g124.t1"; gene_id "g124"; >--- 5171 ---- >! chrI AUGUSTUS 5'-UTR 788420 788447 0.92 - . transcript_id "g124.t1"; gene_id "g124"; >*************** >*** 5186,5187 **** >! chrI AUGUSTUS gene 788750 790347 0.18 - . g125 >! chrI AUGUSTUS transcript 788750 790347 0.18 - . g125.t1 >--- 5186,5187 ---- >! chrI AUGUSTUS gene 788750 790347 0.23 - . g125 >! chrI AUGUSTUS transcript 788750 790347 0.23 - . g125.t1 >*************** >*** 5189 **** >! chrI AUGUSTUS 3'-UTR 788750 788770 0.72 - . transcript_id "g125.t1"; gene_id "g125"; >--- 5189 ---- >! chrI AUGUSTUS 3'-UTR 788750 788770 0.76 - . transcript_id "g125.t1"; gene_id "g125"; >*************** >*** 5191,5193 **** >! chrI AUGUSTUS terminal 788771 789213 0.63 - 2 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS internal 789493 789640 0.93 - 0 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS internal 789686 789750 0.93 - 2 transcript_id "g125.t1"; gene_id "g125"; >--- 5191,5193 ---- >! chrI AUGUSTUS terminal 788771 789213 0.62 - 2 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS internal 789493 789640 0.88 - 0 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS internal 789686 789750 0.88 - 2 transcript_id "g125.t1"; gene_id "g125"; >*************** >*** 5196,5198 **** >! chrI AUGUSTUS initial 790177 790310 0.95 - 0 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS intron 789214 789492 0.94 - . transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS intron 789641 789685 0.93 - . transcript_id "g125.t1"; gene_id "g125"; >--- 5196,5198 ---- >! chrI AUGUSTUS initial 790177 790310 0.94 - 0 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS intron 789214 789492 0.91 - . transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS intron 789641 789685 0.88 - . transcript_id "g125.t1"; gene_id "g125"; >*************** >*** 5201,5204 **** >! chrI AUGUSTUS intron 790131 790176 0.99 - . transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS CDS 788771 789213 0.63 - 2 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS CDS 789493 789640 0.93 - 0 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS CDS 789686 789750 0.93 - 2 transcript_id "g125.t1"; gene_id "g125"; >--- 5201,5204 ---- >! chrI AUGUSTUS intron 790131 790176 1 - . transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS CDS 788771 789213 0.62 - 2 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS CDS 789493 789640 0.88 - 0 transcript_id "g125.t1"; gene_id "g125"; >! chrI AUGUSTUS CDS 789686 789750 0.88 - 2 transcript_id "g125.t1"; gene_id "g125"; >*************** >*** 5207 **** >! chrI AUGUSTUS CDS 790177 790310 0.95 - 0 transcript_id "g125.t1"; gene_id "g125"; >--- 5207 ---- >! chrI AUGUSTUS CDS 790177 790310 0.94 - 0 transcript_id "g125.t1"; gene_id "g125"; >*************** >*** 5209 **** >! chrI AUGUSTUS 5'-UTR 790311 790347 0.57 - . transcript_id "g125.t1"; gene_id "g125"; >--- 5209 ---- >! chrI AUGUSTUS 5'-UTR 790311 790347 0.55 - . transcript_id "g125.t1"; gene_id "g125"; >*************** >*** 5230 **** >! chrI AUGUSTUS 5'-UTR 791668 791689 0.49 + . transcript_id "g126.t1"; gene_id "g126"; >--- 5230 ---- >! chrI AUGUSTUS 5'-UTR 791668 791689 0.26 + . transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 5232,5234 **** >! chrI AUGUSTUS initial 791690 791790 0.99 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 791983 792089 1 + 1 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 792133 792238 0.99 + 2 transcript_id "g126.t1"; gene_id "g126"; >--- 5232,5234 ---- >! chrI AUGUSTUS initial 791690 791790 0.98 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 791983 792089 0.98 + 1 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 792133 792238 0.98 + 2 transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 5237,5242 **** >! chrI AUGUSTUS internal 794014 794250 0.68 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 794296 794382 0.72 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 794648 794892 0.36 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 795270 795360 0.36 + 1 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 796133 796210 0.93 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 796276 796397 0.98 + 0 transcript_id "g126.t1"; gene_id "g126"; >--- 5237,5242 ---- >! chrI AUGUSTUS internal 794014 794250 0.77 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 794296 794382 0.75 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 794648 794892 0.41 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 795270 795360 0.41 + 1 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 796133 796210 0.92 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS internal 796276 796397 0.99 + 0 transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 5245,5249 **** >! chrI AUGUSTUS internal 796919 797063 0.51 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS terminal 797123 797262 0.99 + 2 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 791791 791982 1 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 792090 792132 1 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 792239 792341 0.99 + . transcript_id "g126.t1"; gene_id "g126"; >--- 5245,5249 ---- >! chrI AUGUSTUS internal 796919 797063 0.48 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS terminal 797123 797262 1 + 2 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 791791 791982 0.99 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 792090 792132 0.98 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 792239 792341 1 + . transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 5252,5256 **** >! chrI AUGUSTUS intron 794251 794295 0.69 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 794383 794647 0.98 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 794893 795269 0.36 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 795361 796132 0.93 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 796211 796275 0.95 + . transcript_id "g126.t1"; gene_id "g126"; >--- 5252,5256 ---- >! chrI AUGUSTUS intron 794251 794295 0.78 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 794383 794647 0.96 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 794893 795269 0.41 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 795361 796132 0.92 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS intron 796211 796275 0.96 + . transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 5260,5263 **** >! chrI AUGUSTUS intron 797064 797122 0.51 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 791690 791790 0.99 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 791983 792089 1 + 1 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 792133 792238 0.99 + 2 transcript_id "g126.t1"; gene_id "g126"; >--- 5260,5263 ---- >! chrI AUGUSTUS intron 797064 797122 0.48 + . transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 791690 791790 0.98 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 791983 792089 0.98 + 1 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 792133 792238 0.98 + 2 transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 5266,5271 **** >! chrI AUGUSTUS CDS 794014 794250 0.68 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 794296 794382 0.72 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 794648 794892 0.36 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 795270 795360 0.36 + 1 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 796133 796210 0.93 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 796276 796397 0.98 + 0 transcript_id "g126.t1"; gene_id "g126"; >--- 5266,5271 ---- >! chrI AUGUSTUS CDS 794014 794250 0.77 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 794296 794382 0.75 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 794648 794892 0.41 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 795270 795360 0.41 + 1 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 796133 796210 0.92 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 796276 796397 0.99 + 0 transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 5274,5275 **** >! chrI AUGUSTUS CDS 796919 797063 0.51 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 797123 797262 0.99 + 2 transcript_id "g126.t1"; gene_id "g126"; >--- 5274,5275 ---- >! chrI AUGUSTUS CDS 796919 797063 0.48 + 0 transcript_id "g126.t1"; gene_id "g126"; >! chrI AUGUSTUS CDS 797123 797262 1 + 2 transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 5277 **** >! chrI AUGUSTUS 3'-UTR 797263 797333 0.88 + . transcript_id "g126.t1"; gene_id "g126"; >--- 5277 ---- >! chrI AUGUSTUS 3'-UTR 797263 797333 0.82 + . transcript_id "g126.t1"; gene_id "g126"; >*************** >*** 5299,5300 **** >! chrI AUGUSTUS gene 798176 799907 0.63 - . g127 >! chrI AUGUSTUS transcript 798176 799907 0.63 - . g127.t1 >--- 5299,5300 ---- >! chrI AUGUSTUS gene 798176 799907 0.77 - . g127 >! chrI AUGUSTUS transcript 798176 799907 0.77 - . g127.t1 >*************** >*** 5302 **** >! chrI AUGUSTUS 3'-UTR 798176 798213 0.71 - . transcript_id "g127.t1"; gene_id "g127"; >--- 5302 ---- >! chrI AUGUSTUS 3'-UTR 798176 798213 0.81 - . transcript_id "g127.t1"; gene_id "g127"; >*************** >*** 5316 **** >! chrI AUGUSTUS 5'-UTR 799846 799907 0.9 - . transcript_id "g127.t1"; gene_id "g127"; >--- 5316 ---- >! chrI AUGUSTUS 5'-UTR 799846 799907 0.96 - . transcript_id "g127.t1"; gene_id "g127"; >*************** >*** 5334,5335 **** >! chrI AUGUSTUS gene 802778 815815 0.06 + . g128 >! chrI AUGUSTUS transcript 802778 815815 0.06 + . g128.t1 >--- 5334,5335 ---- >! chrI AUGUSTUS gene 802778 815815 0.04 + . g128 >! chrI AUGUSTUS transcript 802778 815815 0.04 + . g128.t1 >*************** >*** 5337 **** >! chrI AUGUSTUS 5'-UTR 802778 802822 0.2 + . transcript_id "g128.t1"; gene_id "g128"; >--- 5337 ---- >! chrI AUGUSTUS 5'-UTR 802778 802822 0.18 + . transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5342,5343 **** >! chrI AUGUSTUS internal 804939 805231 0.97 + 2 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS internal 805325 805400 0.96 + 0 transcript_id "g128.t1"; gene_id "g128"; >--- 5342,5343 ---- >! chrI AUGUSTUS internal 804939 805231 0.99 + 2 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS internal 805325 805400 0.99 + 0 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5345,5346 **** >! chrI AUGUSTUS internal 805771 806032 0.74 + 1 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS internal 806795 806972 0.8 + 0 transcript_id "g128.t1"; gene_id "g128"; >--- 5345,5346 ---- >! chrI AUGUSTUS internal 805771 806032 0.81 + 1 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS internal 806795 806972 0.82 + 0 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5356 **** >! chrI AUGUSTUS internal 810290 810588 1 + 2 transcript_id "g128.t1"; gene_id "g128"; >--- 5356 ---- >! chrI AUGUSTUS internal 810290 810588 0.99 + 2 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5359 **** >! chrI AUGUSTUS internal 811471 811623 0.98 + 2 transcript_id "g128.t1"; gene_id "g128"; >--- 5359 ---- >! chrI AUGUSTUS internal 811471 811623 1 + 2 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5362 **** >! chrI AUGUSTUS internal 812786 812939 1 + 0 transcript_id "g128.t1"; gene_id "g128"; >--- 5362 ---- >! chrI AUGUSTUS internal 812786 812939 0.99 + 0 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5367,5370 **** >! chrI AUGUSTUS internal 814096 814361 0.8 + 0 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS terminal 815467 815644 0.97 + 1 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS intron 802962 803997 0.99 + . transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS intron 804105 804151 1 + . transcript_id "g128.t1"; gene_id "g128"; >--- 5367,5370 ---- >! chrI AUGUSTUS internal 814096 814361 0.84 + 0 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS terminal 815467 815644 0.98 + 1 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS intron 802962 803997 1 + . transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS intron 804105 804151 0.99 + . transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5372,5374 **** >! chrI AUGUSTUS intron 805232 805324 0.97 + . transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS intron 805401 805455 0.97 + . transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS intron 805724 805770 0.74 + . transcript_id "g128.t1"; gene_id "g128"; >--- 5372,5374 ---- >! chrI AUGUSTUS intron 805232 805324 0.99 + . transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS intron 805401 805455 0.99 + . transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS intron 805724 805770 0.81 + . transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5376 **** >! chrI AUGUSTUS intron 806973 807018 0.8 + . transcript_id "g128.t1"; gene_id "g128"; >--- 5376 ---- >! chrI AUGUSTUS intron 806973 807018 0.82 + . transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5380 **** >! chrI AUGUSTUS intron 808446 808660 0.87 + . transcript_id "g128.t1"; gene_id "g128"; >--- 5380 ---- >! chrI AUGUSTUS intron 808446 808660 0.85 + . transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5389 **** >! chrI AUGUSTUS intron 811624 811674 0.98 + . transcript_id "g128.t1"; gene_id "g128"; >--- 5389 ---- >! chrI AUGUSTUS intron 811624 811674 1 + . transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5392 **** >! chrI AUGUSTUS intron 812940 813000 1 + . transcript_id "g128.t1"; gene_id "g128"; >--- 5392 ---- >! chrI AUGUSTUS intron 812940 813000 0.99 + . transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5396 **** >! chrI AUGUSTUS intron 813749 814095 0.8 + . transcript_id "g128.t1"; gene_id "g128"; >--- 5396 ---- >! chrI AUGUSTUS intron 813749 814095 0.84 + . transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5401,5402 **** >! chrI AUGUSTUS CDS 804939 805231 0.97 + 2 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS CDS 805325 805400 0.96 + 0 transcript_id "g128.t1"; gene_id "g128"; >--- 5401,5402 ---- >! chrI AUGUSTUS CDS 804939 805231 0.99 + 2 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS CDS 805325 805400 0.99 + 0 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5404,5405 **** >! chrI AUGUSTUS CDS 805771 806032 0.74 + 1 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS CDS 806795 806972 0.8 + 0 transcript_id "g128.t1"; gene_id "g128"; >--- 5404,5405 ---- >! chrI AUGUSTUS CDS 805771 806032 0.81 + 1 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS CDS 806795 806972 0.82 + 0 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5415 **** >! chrI AUGUSTUS CDS 810290 810588 1 + 2 transcript_id "g128.t1"; gene_id "g128"; >--- 5415 ---- >! chrI AUGUSTUS CDS 810290 810588 0.99 + 2 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5418 **** >! chrI AUGUSTUS CDS 811471 811623 0.98 + 2 transcript_id "g128.t1"; gene_id "g128"; >--- 5418 ---- >! chrI AUGUSTUS CDS 811471 811623 1 + 2 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5421 **** >! chrI AUGUSTUS CDS 812786 812939 1 + 0 transcript_id "g128.t1"; gene_id "g128"; >--- 5421 ---- >! chrI AUGUSTUS CDS 812786 812939 0.99 + 0 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5426,5427 **** >! chrI AUGUSTUS CDS 814096 814361 0.8 + 0 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS CDS 815467 815644 0.97 + 1 transcript_id "g128.t1"; gene_id "g128"; >--- 5426,5427 ---- >! chrI AUGUSTUS CDS 814096 814361 0.84 + 0 transcript_id "g128.t1"; gene_id "g128"; >! chrI AUGUSTUS CDS 815467 815644 0.98 + 1 transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5429 **** >! chrI AUGUSTUS 3'-UTR 815645 815815 0.56 + . transcript_id "g128.t1"; gene_id "g128"; >--- 5429 ---- >! chrI AUGUSTUS 3'-UTR 815645 815815 0.54 + . transcript_id "g128.t1"; gene_id "g128"; >*************** >*** 5462,5463 **** >! chrI AUGUSTUS gene 816458 820763 0.04 + . g129 >! chrI AUGUSTUS transcript 816458 820763 0.04 + . g129.t1 >--- 5462,5463 ---- >! chrI AUGUSTUS gene 816458 820763 0.02 + . g129 >! chrI AUGUSTUS transcript 816458 820763 0.02 + . g129.t1 >*************** >*** 5465 **** >! chrI AUGUSTUS 5'-UTR 816458 816484 0.33 + . transcript_id "g129.t1"; gene_id "g129"; >--- 5465 ---- >! chrI AUGUSTUS 5'-UTR 816458 816484 0.28 + . transcript_id "g129.t1"; gene_id "g129"; >*************** >*** 5470,5473 **** >! chrI AUGUSTUS internal 817555 817626 0.22 + 0 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS internal 819485 819696 0.97 + 0 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS internal 819765 819836 0.89 + 1 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS internal 819891 820008 0.98 + 1 transcript_id "g129.t1"; gene_id "g129"; >--- 5470,5473 ---- >! chrI AUGUSTUS internal 817555 817626 0.17 + 0 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS internal 819485 819696 0.96 + 0 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS internal 819765 819836 0.91 + 1 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS internal 819891 820008 0.99 + 1 transcript_id "g129.t1"; gene_id "g129"; >*************** >*** 5478,5480 **** >! chrI AUGUSTUS intron 817627 819484 0.22 + . transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS intron 819697 819764 0.89 + . transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS intron 819837 819890 0.87 + . transcript_id "g129.t1"; gene_id "g129"; >--- 5478,5480 ---- >! chrI AUGUSTUS intron 817627 819484 0.17 + . transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS intron 819697 819764 0.91 + . transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS intron 819837 819890 0.9 + . transcript_id "g129.t1"; gene_id "g129"; >*************** >*** 5485,5488 **** >! chrI AUGUSTUS CDS 817555 817626 0.22 + 0 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS CDS 819485 819696 0.97 + 0 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS CDS 819765 819836 0.89 + 1 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS CDS 819891 820008 0.98 + 1 transcript_id "g129.t1"; gene_id "g129"; >--- 5485,5488 ---- >! chrI AUGUSTUS CDS 817555 817626 0.17 + 0 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS CDS 819485 819696 0.96 + 0 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS CDS 819765 819836 0.91 + 1 transcript_id "g129.t1"; gene_id "g129"; >! chrI AUGUSTUS CDS 819891 820008 0.99 + 1 transcript_id "g129.t1"; gene_id "g129"; >*************** >*** 5491 **** >! chrI AUGUSTUS 3'-UTR 820690 820763 0.31 + . transcript_id "g129.t1"; gene_id "g129"; >--- 5491 ---- >! chrI AUGUSTUS 3'-UTR 820690 820763 0.3 + . transcript_id "g129.t1"; gene_id "g129"; >*************** >*** 5545 **** >! chrI AUGUSTUS 3'-UTR 822236 822933 0.82 - . transcript_id "g131.t1"; gene_id "g131"; >--- 5545 ---- >! chrI AUGUSTUS 3'-UTR 822236 822933 0.86 - . transcript_id "g131.t1"; gene_id "g131"; >*************** >*** 5547,5553 **** >! chrI AUGUSTUS terminal 822934 823010 0.95 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS internal 823480 823938 0.99 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS internal 824878 825430 0.96 - 0 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS internal 828481 828599 0.95 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS initial 830120 830294 0.76 - 0 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS intron 823011 823479 0.95 - . transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS intron 823939 824877 0.96 - . transcript_id "g131.t1"; gene_id "g131"; >--- 5547,5553 ---- >! chrI AUGUSTUS terminal 822934 823010 0.96 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS internal 823480 823938 1 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS internal 824878 825430 0.94 - 0 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS internal 828481 828599 0.98 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS initial 830120 830294 0.73 - 0 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS intron 823011 823479 0.96 - . transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS intron 823939 824877 0.94 - . transcript_id "g131.t1"; gene_id "g131"; >*************** >*** 5555,5560 **** >! chrI AUGUSTUS intron 828600 830119 0.95 - . transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 822934 823010 0.95 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 823480 823938 0.99 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 824878 825430 0.96 - 0 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 828481 828599 0.95 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 830120 830294 0.76 - 0 transcript_id "g131.t1"; gene_id "g131"; >--- 5555,5560 ---- >! chrI AUGUSTUS intron 828600 830119 0.97 - . transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 822934 823010 0.96 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 823480 823938 1 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 824878 825430 0.94 - 0 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 828481 828599 0.98 - 2 transcript_id "g131.t1"; gene_id "g131"; >! chrI AUGUSTUS CDS 830120 830294 0.73 - 0 transcript_id "g131.t1"; gene_id "g131"; >*************** >*** 5562 **** >! chrI AUGUSTUS 5'-UTR 830295 830357 0.3 - . transcript_id "g131.t1"; gene_id "g131"; >--- 5562 ---- >! chrI AUGUSTUS 5'-UTR 830295 830357 0.29 - . transcript_id "g131.t1"; gene_id "g131"; >*************** >*** 5581,5582 **** >! chrI AUGUSTUS gene 846948 849832 0.03 + . g132 >! chrI AUGUSTUS transcript 846948 849832 0.03 + . g132.t1 >--- 5581,5582 ---- >! chrI AUGUSTUS gene 846948 849832 0.02 + . g132 >! chrI AUGUSTUS transcript 846948 849832 0.02 + . g132.t1 >*************** >*** 5584 **** >! chrI AUGUSTUS 5'-UTR 846948 846974 0.12 + . transcript_id "g132.t1"; gene_id "g132"; >--- 5584 ---- >! chrI AUGUSTUS 5'-UTR 846948 846974 0.1 + . transcript_id "g132.t1"; gene_id "g132"; >*************** >*** 5586 **** >! chrI AUGUSTUS initial 846975 847055 0.31 + 0 transcript_id "g132.t1"; gene_id "g132"; >--- 5586 ---- >! chrI AUGUSTUS initial 846975 847055 0.35 + 0 transcript_id "g132.t1"; gene_id "g132"; >*************** >*** 5588,5590 **** >! chrI AUGUSTUS internal 848045 848587 0.71 + 0 transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS internal 849256 849387 0.96 + 0 transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS terminal 849680 849793 0.98 + 0 transcript_id "g132.t1"; gene_id "g132"; >--- 5588,5590 ---- >! chrI AUGUSTUS internal 848045 848587 0.75 + 0 transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS internal 849256 849387 0.99 + 0 transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS terminal 849680 849793 0.99 + 0 transcript_id "g132.t1"; gene_id "g132"; >*************** >*** 5593,5595 **** >! chrI AUGUSTUS intron 848588 849255 0.99 + . transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS intron 849388 849679 0.97 + . transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS CDS 846975 847055 0.31 + 0 transcript_id "g132.t1"; gene_id "g132"; >--- 5593,5595 ---- >! chrI AUGUSTUS intron 848588 849255 1 + . transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS intron 849388 849679 0.99 + . transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS CDS 846975 847055 0.35 + 0 transcript_id "g132.t1"; gene_id "g132"; >*************** >*** 5597,5599 **** >! chrI AUGUSTUS CDS 848045 848587 0.71 + 0 transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS CDS 849256 849387 0.96 + 0 transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS CDS 849680 849793 0.98 + 0 transcript_id "g132.t1"; gene_id "g132"; >--- 5597,5599 ---- >! chrI AUGUSTUS CDS 848045 848587 0.75 + 0 transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS CDS 849256 849387 0.99 + 0 transcript_id "g132.t1"; gene_id "g132"; >! chrI AUGUSTUS CDS 849680 849793 0.99 + 0 transcript_id "g132.t1"; gene_id "g132"; >*************** >*** 5601 **** >! chrI AUGUSTUS 3'-UTR 849794 849832 0.22 + . transcript_id "g132.t1"; gene_id "g132"; >--- 5601 ---- >! chrI AUGUSTUS 3'-UTR 849794 849832 0.21 + . transcript_id "g132.t1"; gene_id "g132"; >*************** >*** 5623 **** >! chrI AUGUSTUS 3'-UTR 851958 852030 0.86 - . transcript_id "g133.t1"; gene_id "g133"; >--- 5623 ---- >! chrI AUGUSTUS 3'-UTR 851958 852030 0.79 - . transcript_id "g133.t1"; gene_id "g133"; >*************** >*** 5627,5628 **** >! chrI AUGUSTUS internal 853159 853260 0.95 - 2 transcript_id "g133.t1"; gene_id "g133"; >! chrI AUGUSTUS initial 853316 853319 0.92 - 0 transcript_id "g133.t1"; gene_id "g133"; >--- 5627,5628 ---- >! chrI AUGUSTUS internal 853159 853260 0.99 - 2 transcript_id "g133.t1"; gene_id "g133"; >! chrI AUGUSTUS initial 853316 853319 0.98 - 0 transcript_id "g133.t1"; gene_id "g133"; >*************** >*** 5631 **** >! chrI AUGUSTUS intron 853261 853315 0.95 - . transcript_id "g133.t1"; gene_id "g133"; >--- 5631 ---- >! chrI AUGUSTUS intron 853261 853315 0.99 - . transcript_id "g133.t1"; gene_id "g133"; >*************** >*** 5634,5635 **** >! chrI AUGUSTUS CDS 853159 853260 0.95 - 2 transcript_id "g133.t1"; gene_id "g133"; >! chrI AUGUSTUS CDS 853316 853319 0.92 - 0 transcript_id "g133.t1"; gene_id "g133"; >--- 5634,5635 ---- >! chrI AUGUSTUS CDS 853159 853260 0.99 - 2 transcript_id "g133.t1"; gene_id "g133"; >! chrI AUGUSTUS CDS 853316 853319 0.98 - 0 transcript_id "g133.t1"; gene_id "g133"; >*************** >*** 5637 **** >! chrI AUGUSTUS 5'-UTR 853320 853384 0.84 - . transcript_id "g133.t1"; gene_id "g133"; >--- 5637 ---- >! chrI AUGUSTUS 5'-UTR 853320 853384 0.94 - . transcript_id "g133.t1"; gene_id "g133"; >*************** >*** 5652,5653 **** >! chrI AUGUSTUS gene 853926 855754 0.1 - . g134 >! chrI AUGUSTUS transcript 853926 855754 0.1 - . g134.t1 >--- 5652,5653 ---- >! chrI AUGUSTUS gene 853926 855754 0.18 - . g134 >! chrI AUGUSTUS transcript 853926 855754 0.18 - . g134.t1 >*************** >*** 5655 **** >! chrI AUGUSTUS 3'-UTR 853926 854051 0.39 - . transcript_id "g134.t1"; gene_id "g134"; >--- 5655 ---- >! chrI AUGUSTUS 3'-UTR 853926 854051 0.43 - . transcript_id "g134.t1"; gene_id "g134"; >*************** >*** 5658,5660 **** >! chrI AUGUSTUS internal 854192 854404 0.74 - 0 transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS internal 854453 855250 0.73 - 0 transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS initial 855573 855671 0.97 - 0 transcript_id "g134.t1"; gene_id "g134"; >--- 5658,5660 ---- >! chrI AUGUSTUS internal 854192 854404 0.85 - 0 transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS internal 854453 855250 0.85 - 0 transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS initial 855573 855671 0.94 - 0 transcript_id "g134.t1"; gene_id "g134"; >*************** >*** 5662,5663 **** >! chrI AUGUSTUS intron 854405 854452 0.73 - . transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS intron 855251 855572 0.97 - . transcript_id "g134.t1"; gene_id "g134"; >--- 5662,5663 ---- >! chrI AUGUSTUS intron 854405 854452 0.85 - . transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS intron 855251 855572 0.94 - . transcript_id "g134.t1"; gene_id "g134"; >*************** >*** 5665,5667 **** >! chrI AUGUSTUS CDS 854192 854404 0.74 - 0 transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS CDS 854453 855250 0.73 - 0 transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS CDS 855573 855671 0.97 - 0 transcript_id "g134.t1"; gene_id "g134"; >--- 5665,5667 ---- >! chrI AUGUSTUS CDS 854192 854404 0.85 - 0 transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS CDS 854453 855250 0.85 - 0 transcript_id "g134.t1"; gene_id "g134"; >! chrI AUGUSTUS CDS 855573 855671 0.94 - 0 transcript_id "g134.t1"; gene_id "g134"; >*************** >*** 5669 **** >! chrI AUGUSTUS 5'-UTR 855672 855754 0.38 - . transcript_id "g134.t1"; gene_id "g134"; >--- 5669 ---- >! chrI AUGUSTUS 5'-UTR 855672 855754 0.39 - . transcript_id "g134.t1"; gene_id "g134"; >*************** >*** 5687,5688 **** >! chrI AUGUSTUS gene 866305 869399 0.39 + . g135 >! chrI AUGUSTUS transcript 866305 869399 0.39 + . g135.t1 >--- 5687,5688 ---- >! chrI AUGUSTUS gene 866305 869399 0.35 + . g135 >! chrI AUGUSTUS transcript 866305 869399 0.35 + . g135.t1 >*************** >*** 5690 **** >! chrI AUGUSTUS 5'-UTR 866305 866540 0.85 + . transcript_id "g135.t1"; gene_id "g135"; >--- 5690 ---- >! chrI AUGUSTUS 5'-UTR 866305 866540 0.83 + . transcript_id "g135.t1"; gene_id "g135"; >*************** >*** 5693 **** >! chrI AUGUSTUS internal 867245 867307 0.73 + 0 transcript_id "g135.t1"; gene_id "g135"; >--- 5693 ---- >! chrI AUGUSTUS internal 867245 867307 0.72 + 0 transcript_id "g135.t1"; gene_id "g135"; >*************** >*** 5696,5699 **** >! chrI AUGUSTUS internal 868969 869074 0.92 + 2 transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS terminal 869195 869255 0.92 + 1 transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS intron 866607 867244 0.53 + . transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS intron 867308 867426 0.73 + . transcript_id "g135.t1"; gene_id "g135"; >--- 5696,5699 ---- >! chrI AUGUSTUS internal 868969 869074 0.88 + 2 transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS terminal 869195 869255 0.88 + 1 transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS intron 866607 867244 0.5 + . transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS intron 867308 867426 0.72 + . transcript_id "g135.t1"; gene_id "g135"; >*************** >*** 5701,5702 **** >! chrI AUGUSTUS intron 867932 868968 0.93 + . transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS intron 869075 869194 0.92 + . transcript_id "g135.t1"; gene_id "g135"; >--- 5701,5702 ---- >! chrI AUGUSTUS intron 867932 868968 0.91 + . transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS intron 869075 869194 0.88 + . transcript_id "g135.t1"; gene_id "g135"; >*************** >*** 5704 **** >! chrI AUGUSTUS CDS 867245 867307 0.73 + 0 transcript_id "g135.t1"; gene_id "g135"; >--- 5704 ---- >! chrI AUGUSTUS CDS 867245 867307 0.72 + 0 transcript_id "g135.t1"; gene_id "g135"; >*************** >*** 5707,5708 **** >! chrI AUGUSTUS CDS 868969 869074 0.92 + 2 transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS CDS 869195 869255 0.92 + 1 transcript_id "g135.t1"; gene_id "g135"; >--- 5707,5708 ---- >! chrI AUGUSTUS CDS 868969 869074 0.88 + 2 transcript_id "g135.t1"; gene_id "g135"; >! chrI AUGUSTUS CDS 869195 869255 0.88 + 1 transcript_id "g135.t1"; gene_id "g135"; >*************** >*** 5710 **** >! chrI AUGUSTUS 3'-UTR 869256 869399 0.82 + . transcript_id "g135.t1"; gene_id "g135"; >--- 5710 ---- >! chrI AUGUSTUS 3'-UTR 869256 869399 0.79 + . transcript_id "g135.t1"; gene_id "g135"; >*************** >*** 5727,5728 **** >! chrI AUGUSTUS gene 870496 875324 0.15 - . g136 >! chrI AUGUSTUS transcript 870496 875324 0.15 - . g136.t1 >--- 5727,5728 ---- >! chrI AUGUSTUS gene 870496 875324 0.2 - . g136 >! chrI AUGUSTUS transcript 870496 875324 0.2 - . g136.t1 >*************** >*** 5732,5736 **** >! chrI AUGUSTUS terminal 870609 870632 0.76 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS internal 871499 871716 1 - 2 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS internal 872667 872754 0.75 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS internal 873116 873226 0.9 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS internal 874419 874520 0.78 - 0 transcript_id "g136.t1"; gene_id "g136"; >--- 5732,5736 ---- >! chrI AUGUSTUS terminal 870609 870632 0.67 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS internal 871499 871716 0.99 - 2 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS internal 872667 872754 0.78 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS internal 873116 873226 0.95 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS internal 874419 874520 0.87 - 0 transcript_id "g136.t1"; gene_id "g136"; >*************** >*** 5738,5744 **** >! chrI AUGUSTUS internal 875083 875153 0.99 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS initial 875204 875290 0.97 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 870633 871498 0.76 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 871717 872666 1 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 872755 873115 0.68 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 873227 874418 0.74 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 874521 874869 0.78 - . transcript_id "g136.t1"; gene_id "g136"; >--- 5738,5744 ---- >! chrI AUGUSTUS internal 875083 875153 1 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS initial 875204 875290 0.99 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 870633 871498 0.67 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 871717 872666 0.99 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 872755 873115 0.75 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 873227 874418 0.86 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS intron 874521 874869 0.87 - . transcript_id "g136.t1"; gene_id "g136"; >*************** >*** 5746,5751 **** >! chrI AUGUSTUS intron 875154 875203 0.99 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 870609 870632 0.76 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 871499 871716 1 - 2 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 872667 872754 0.75 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 873116 873226 0.9 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 874419 874520 0.78 - 0 transcript_id "g136.t1"; gene_id "g136"; >--- 5746,5751 ---- >! chrI AUGUSTUS intron 875154 875203 1 - . transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 870609 870632 0.67 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 871499 871716 0.99 - 2 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 872667 872754 0.78 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 873116 873226 0.95 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 874419 874520 0.87 - 0 transcript_id "g136.t1"; gene_id "g136"; >*************** >*** 5753,5754 **** >! chrI AUGUSTUS CDS 875083 875153 0.99 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 875204 875290 0.97 - 0 transcript_id "g136.t1"; gene_id "g136"; >--- 5753,5754 ---- >! chrI AUGUSTUS CDS 875083 875153 1 - 0 transcript_id "g136.t1"; gene_id "g136"; >! chrI AUGUSTUS CDS 875204 875290 0.99 - 0 transcript_id "g136.t1"; gene_id "g136"; >*************** >*** 5756 **** >! chrI AUGUSTUS 5'-UTR 875291 875324 0.91 - . transcript_id "g136.t1"; gene_id "g136"; >--- 5756 ---- >! chrI AUGUSTUS 5'-UTR 875291 875324 0.9 - . transcript_id "g136.t1"; gene_id "g136"; >*************** >*** 5774,5775 **** >! chrI AUGUSTUS gene 875398 876334 0.81 - . g137 >! chrI AUGUSTUS transcript 875398 876334 0.81 - . g137.t1 >--- 5774,5775 ---- >! chrI AUGUSTUS gene 875398 876334 0.82 - . g137 >! chrI AUGUSTUS transcript 875398 876334 0.82 - . g137.t1 >*************** >*** 5779,5780 **** >! chrI AUGUSTUS terminal 875432 875602 1 - 0 transcript_id "g137.t1"; gene_id "g137"; >! chrI AUGUSTUS internal 875651 875972 1 - 1 transcript_id "g137.t1"; gene_id "g137"; >--- 5779,5780 ---- >! chrI AUGUSTUS terminal 875432 875602 0.96 - 0 transcript_id "g137.t1"; gene_id "g137"; >! chrI AUGUSTUS internal 875651 875972 0.96 - 1 transcript_id "g137.t1"; gene_id "g137"; >*************** >*** 5782 **** >! chrI AUGUSTUS intron 875603 875650 1 - . transcript_id "g137.t1"; gene_id "g137"; >--- 5782 ---- >! chrI AUGUSTUS intron 875603 875650 0.96 - . transcript_id "g137.t1"; gene_id "g137"; >*************** >*** 5784,5785 **** >! chrI AUGUSTUS CDS 875432 875602 1 - 0 transcript_id "g137.t1"; gene_id "g137"; >! chrI AUGUSTUS CDS 875651 875972 1 - 1 transcript_id "g137.t1"; gene_id "g137"; >--- 5784,5785 ---- >! chrI AUGUSTUS CDS 875432 875602 0.96 - 0 transcript_id "g137.t1"; gene_id "g137"; >! chrI AUGUSTUS CDS 875651 875972 0.96 - 1 transcript_id "g137.t1"; gene_id "g137"; >*************** >*** 5788 **** >! chrI AUGUSTUS 5'-UTR 876304 876334 0.81 - . transcript_id "g137.t1"; gene_id "g137"; >--- 5788 ---- >! chrI AUGUSTUS 5'-UTR 876304 876334 0.84 - . transcript_id "g137.t1"; gene_id "g137"; >*************** >*** 5804,5805 **** >! chrI AUGUSTUS gene 876715 878522 0.63 + . g138 >! chrI AUGUSTUS transcript 876715 878522 0.63 + . g138.t1 >--- 5804,5805 ---- >! chrI AUGUSTUS gene 876715 878522 0.49 + . g138 >! chrI AUGUSTUS transcript 876715 878522 0.49 + . g138.t1 >*************** >*** 5807 **** >! chrI AUGUSTUS 5'-UTR 876715 876936 0.92 + . transcript_id "g138.t1"; gene_id "g138"; >--- 5807 ---- >! chrI AUGUSTUS 5'-UTR 876715 876936 0.96 + . transcript_id "g138.t1"; gene_id "g138"; >*************** >*** 5821 **** >! chrI AUGUSTUS 3'-UTR 878039 878522 0.67 + . transcript_id "g138.t1"; gene_id "g138"; >--- 5821 ---- >! chrI AUGUSTUS 3'-UTR 878039 878522 0.52 + . transcript_id "g138.t1"; gene_id "g138"; >*************** >*** 5840,5841 **** >! chrI AUGUSTUS gene 878675 880934 0.68 + . g139 >! chrI AUGUSTUS transcript 878675 880934 0.68 + . g139.t1 >--- 5840,5841 ---- >! chrI AUGUSTUS gene 878675 880934 0.51 + . g139 >! chrI AUGUSTUS transcript 878675 880934 0.51 + . g139.t1 >*************** >*** 5843 **** >! chrI AUGUSTUS 5'-UTR 878675 878834 0.89 + . transcript_id "g139.t1"; gene_id "g139"; >--- 5843 ---- >! chrI AUGUSTUS 5'-UTR 878675 878834 0.83 + . transcript_id "g139.t1"; gene_id "g139"; >*************** >*** 5845 **** >! chrI AUGUSTUS initial 878835 878950 1 + 0 transcript_id "g139.t1"; gene_id "g139"; >--- 5845 ---- >! chrI AUGUSTUS initial 878835 878950 0.99 + 0 transcript_id "g139.t1"; gene_id "g139"; >*************** >*** 5847,5849 **** >! chrI AUGUSTUS internal 879452 879554 0.98 + 1 transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS internal 880146 880391 0.96 + 0 transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS terminal 880770 880856 0.96 + 0 transcript_id "g139.t1"; gene_id "g139"; >--- 5847,5849 ---- >! chrI AUGUSTUS internal 879452 879554 0.97 + 1 transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS internal 880146 880391 0.91 + 0 transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS terminal 880770 880856 0.91 + 0 transcript_id "g139.t1"; gene_id "g139"; >*************** >*** 5852,5854 **** >! chrI AUGUSTUS intron 879555 880145 0.98 + . transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS intron 880392 880769 0.96 + . transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS CDS 878835 878950 1 + 0 transcript_id "g139.t1"; gene_id "g139"; >--- 5852,5854 ---- >! chrI AUGUSTUS intron 879555 880145 0.97 + . transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS intron 880392 880769 0.91 + . transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS CDS 878835 878950 0.99 + 0 transcript_id "g139.t1"; gene_id "g139"; >*************** >*** 5856,5858 **** >! chrI AUGUSTUS CDS 879452 879554 0.98 + 1 transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS CDS 880146 880391 0.96 + 0 transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS CDS 880770 880856 0.96 + 0 transcript_id "g139.t1"; gene_id "g139"; >--- 5856,5858 ---- >! chrI AUGUSTUS CDS 879452 879554 0.97 + 1 transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS CDS 880146 880391 0.91 + 0 transcript_id "g139.t1"; gene_id "g139"; >! chrI AUGUSTUS CDS 880770 880856 0.91 + 0 transcript_id "g139.t1"; gene_id "g139"; >*************** >*** 5860 **** >! chrI AUGUSTUS 3'-UTR 880857 880934 0.77 + . transcript_id "g139.t1"; gene_id "g139"; >--- 5860 ---- >! chrI AUGUSTUS 3'-UTR 880857 880934 0.62 + . transcript_id "g139.t1"; gene_id "g139"; >*************** >*** 5878,5879 **** >! chrI AUGUSTUS gene 881932 883544 0.25 - . g140 >! chrI AUGUSTUS transcript 881932 883544 0.25 - . g140.t1 >--- 5878,5879 ---- >! chrI AUGUSTUS gene 881932 883544 0.21 - . g140 >! chrI AUGUSTUS transcript 881932 883544 0.21 - . g140.t1 >*************** >*** 5881 **** >! chrI AUGUSTUS 3'-UTR 881932 881996 0.42 - . transcript_id "g140.t1"; gene_id "g140"; >--- 5881 ---- >! chrI AUGUSTUS 3'-UTR 881932 881996 0.41 - . transcript_id "g140.t1"; gene_id "g140"; >*************** >*** 5883,5887 **** >! chrI AUGUSTUS terminal 881997 882362 0.78 - 0 transcript_id "g140.t1"; gene_id "g140"; >! chrI AUGUSTUS initial 883325 883441 0.99 - 0 transcript_id "g140.t1"; gene_id "g140"; >! chrI AUGUSTUS intron 882363 883324 0.99 - . transcript_id "g140.t1"; gene_id "g140"; >! chrI AUGUSTUS CDS 881997 882362 0.78 - 0 transcript_id "g140.t1"; gene_id "g140"; >! chrI AUGUSTUS CDS 883325 883441 0.99 - 0 transcript_id "g140.t1"; gene_id "g140"; >--- 5883,5887 ---- >! chrI AUGUSTUS terminal 881997 882362 0.66 - 0 transcript_id "g140.t1"; gene_id "g140"; >! chrI AUGUSTUS initial 883325 883441 1 - 0 transcript_id "g140.t1"; gene_id "g140"; >! chrI AUGUSTUS intron 882363 883324 1 - . transcript_id "g140.t1"; gene_id "g140"; >! chrI AUGUSTUS CDS 881997 882362 0.66 - 0 transcript_id "g140.t1"; gene_id "g140"; >! chrI AUGUSTUS CDS 883325 883441 1 - 0 transcript_id "g140.t1"; gene_id "g140"; >*************** >*** 5889 **** >! chrI AUGUSTUS 5'-UTR 883442 883544 0.53 - . transcript_id "g140.t1"; gene_id "g140"; >--- 5889 ---- >! chrI AUGUSTUS 5'-UTR 883442 883544 0.57 - . transcript_id "g140.t1"; gene_id "g140"; >*************** >*** 5905,5906 **** >! chrI AUGUSTUS gene 883635 887274 0.26 - . g141 >! chrI AUGUSTUS transcript 883635 887274 0.26 - . g141.t1 >--- 5905,5906 ---- >! chrI AUGUSTUS gene 883635 887274 0.22 - . g141 >! chrI AUGUSTUS transcript 883635 887274 0.22 - . g141.t1 >*************** >*** 5908 **** >! chrI AUGUSTUS 3'-UTR 883635 883864 0.3 - . transcript_id "g141.t1"; gene_id "g141"; >--- 5908 ---- >! chrI AUGUSTUS 3'-UTR 883635 883864 0.26 - . transcript_id "g141.t1"; gene_id "g141"; >*************** >*** 5911,5914 **** >! chrI AUGUSTUS internal 885746 886408 0.96 - 0 transcript_id "g141.t1"; gene_id "g141"; >! chrI AUGUSTUS initial 887235 887246 0.96 - 0 transcript_id "g141.t1"; gene_id "g141"; >! chrI AUGUSTUS intron 883961 885745 1 - . transcript_id "g141.t1"; gene_id "g141"; >! chrI AUGUSTUS intron 886409 887234 0.96 - . transcript_id "g141.t1"; gene_id "g141"; >--- 5911,5914 ---- >! chrI AUGUSTUS internal 885746 886408 0.94 - 0 transcript_id "g141.t1"; gene_id "g141"; >! chrI AUGUSTUS initial 887235 887246 0.97 - 0 transcript_id "g141.t1"; gene_id "g141"; >! chrI AUGUSTUS intron 883961 885745 0.97 - . transcript_id "g141.t1"; gene_id "g141"; >! chrI AUGUSTUS intron 886409 887234 0.97 - . transcript_id "g141.t1"; gene_id "g141"; >*************** >*** 5916,5917 **** >! chrI AUGUSTUS CDS 885746 886408 0.96 - 0 transcript_id "g141.t1"; gene_id "g141"; >! chrI AUGUSTUS CDS 887235 887246 0.96 - 0 transcript_id "g141.t1"; gene_id "g141"; >--- 5916,5917 ---- >! chrI AUGUSTUS CDS 885746 886408 0.94 - 0 transcript_id "g141.t1"; gene_id "g141"; >! chrI AUGUSTUS CDS 887235 887246 0.97 - 0 transcript_id "g141.t1"; gene_id "g141"; >*************** >*** 5919 **** >! chrI AUGUSTUS 5'-UTR 887247 887274 0.9 - . transcript_id "g141.t1"; gene_id "g141"; >--- 5919 ---- >! chrI AUGUSTUS 5'-UTR 887247 887274 0.92 - . transcript_id "g141.t1"; gene_id "g141"; >*************** >*** 5937,5938 **** >! chrI AUGUSTUS gene 887385 887700 0.95 + . g142 >! chrI AUGUSTUS transcript 887385 887700 0.95 + . g142.t1 >--- 5937,5938 ---- >! chrI AUGUSTUS gene 887385 887700 0.92 + . g142 >! chrI AUGUSTUS transcript 887385 887700 0.92 + . g142.t1 >*************** >*** 5940 **** >! chrI AUGUSTUS 5'-UTR 887385 887419 0.96 + . transcript_id "g142.t1"; gene_id "g142"; >--- 5940 ---- >! chrI AUGUSTUS 5'-UTR 887385 887419 0.93 + . transcript_id "g142.t1"; gene_id "g142"; >*************** >*** 5963 **** >! chrI AUGUSTUS 5'-UTR 887755 887800 0.97 + . transcript_id "g143.t1"; gene_id "g143"; >--- 5963 ---- >! chrI AUGUSTUS 5'-UTR 887755 887800 1 + . transcript_id "g143.t1"; gene_id "g143"; >*************** >*** 5965,5966 **** >! chrI AUGUSTUS single 887801 888355 0.94 + 0 transcript_id "g143.t1"; gene_id "g143"; >! chrI AUGUSTUS CDS 887801 888355 0.94 + 0 transcript_id "g143.t1"; gene_id "g143"; >--- 5965,5966 ---- >! chrI AUGUSTUS single 887801 888355 0.95 + 0 transcript_id "g143.t1"; gene_id "g143"; >! chrI AUGUSTUS CDS 887801 888355 0.95 + 0 transcript_id "g143.t1"; gene_id "g143"; >*************** >*** 5968 **** >! chrI AUGUSTUS 3'-UTR 888356 888431 0.49 + . transcript_id "g143.t1"; gene_id "g143"; >--- 5968 ---- >! chrI AUGUSTUS 3'-UTR 888356 888431 0.46 + . transcript_id "g143.t1"; gene_id "g143"; >*************** >*** 5985,5986 **** >! chrI AUGUSTUS gene 888875 889397 0.04 + . g144 >! chrI AUGUSTUS transcript 888875 889397 0.04 + . g144.t1 >--- 5985,5986 ---- >! chrI AUGUSTUS gene 888875 889397 0.03 + . g144 >! chrI AUGUSTUS transcript 888875 889397 0.03 + . g144.t1 >*************** >*** 5988 **** >! chrI AUGUSTUS 5'-UTR 888875 888900 0.2 + . transcript_id "g144.t1"; gene_id "g144"; >--- 5988 ---- >! chrI AUGUSTUS 5'-UTR 888875 888900 0.13 + . transcript_id "g144.t1"; gene_id "g144"; >*************** >*** 5990,5991 **** >! chrI AUGUSTUS single 888901 889356 0.25 + 0 transcript_id "g144.t1"; gene_id "g144"; >! chrI AUGUSTUS CDS 888901 889356 0.25 + 0 transcript_id "g144.t1"; gene_id "g144"; >--- 5990,5991 ---- >! chrI AUGUSTUS single 888901 889356 0.3 + 0 transcript_id "g144.t1"; gene_id "g144"; >! chrI AUGUSTUS CDS 888901 889356 0.3 + 0 transcript_id "g144.t1"; gene_id "g144"; >*************** >*** 5993 **** >! chrI AUGUSTUS 3'-UTR 889357 889397 0.22 + . transcript_id "g144.t1"; gene_id "g144"; >--- 5993 ---- >! chrI AUGUSTUS 3'-UTR 889357 889397 0.26 + . transcript_id "g144.t1"; gene_id "g144"; >*************** >*** 6009,6010 **** >! chrI AUGUSTUS gene 890675 891285 0.28 + . g145 >! chrI AUGUSTUS transcript 890675 891285 0.28 + . g145.t1 >--- 6009,6010 ---- >! chrI AUGUSTUS gene 890675 891285 0.31 + . g145 >! chrI AUGUSTUS transcript 890675 891285 0.31 + . g145.t1 >*************** >*** 6012 **** >! chrI AUGUSTUS 5'-UTR 890675 890830 0.67 + . transcript_id "g145.t1"; gene_id "g145"; >--- 6012 ---- >! chrI AUGUSTUS 5'-UTR 890675 890830 0.74 + . transcript_id "g145.t1"; gene_id "g145"; >*************** >*** 6014,6015 **** >! chrI AUGUSTUS single 890831 891262 0.55 + 0 transcript_id "g145.t1"; gene_id "g145"; >! chrI AUGUSTUS CDS 890831 891262 0.55 + 0 transcript_id "g145.t1"; gene_id "g145"; >--- 6014,6015 ---- >! chrI AUGUSTUS single 890831 891262 0.47 + 0 transcript_id "g145.t1"; gene_id "g145"; >! chrI AUGUSTUS CDS 890831 891262 0.47 + 0 transcript_id "g145.t1"; gene_id "g145"; >*************** >*** 6017 **** >! chrI AUGUSTUS 3'-UTR 891263 891285 0.46 + . transcript_id "g145.t1"; gene_id "g145"; >--- 6017 ---- >! chrI AUGUSTUS 3'-UTR 891263 891285 0.39 + . transcript_id "g145.t1"; gene_id "g145"; >*************** >*** 6033,6034 **** >! chrI AUGUSTUS gene 892114 893744 0.35 - . g146 >! chrI AUGUSTUS transcript 892114 893744 0.35 - . g146.t1 >--- 6033,6034 ---- >! chrI AUGUSTUS gene 892114 893744 0.29 - . g146 >! chrI AUGUSTUS transcript 892114 893744 0.29 - . g146.t1 >*************** >*** 6036 **** >! chrI AUGUSTUS 3'-UTR 892114 892143 0.73 - . transcript_id "g146.t1"; gene_id "g146"; >--- 6036 ---- >! chrI AUGUSTUS 3'-UTR 892114 892143 0.74 - . transcript_id "g146.t1"; gene_id "g146"; >*************** >*** 6038,6040 **** >! chrI AUGUSTUS terminal 892144 892155 0.95 - 0 transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS internal 892634 892744 1 - 0 transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS internal 893415 893557 0.95 - 2 transcript_id "g146.t1"; gene_id "g146"; >--- 6038,6040 ---- >! chrI AUGUSTUS terminal 892144 892155 0.92 - 0 transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS internal 892634 892744 0.99 - 0 transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS internal 893415 893557 0.94 - 2 transcript_id "g146.t1"; gene_id "g146"; >*************** >*** 6042 **** >! chrI AUGUSTUS intron 892156 892633 0.95 - . transcript_id "g146.t1"; gene_id "g146"; >--- 6042 ---- >! chrI AUGUSTUS intron 892156 892633 0.92 - . transcript_id "g146.t1"; gene_id "g146"; >*************** >*** 6044,6047 **** >! chrI AUGUSTUS intron 893558 893611 0.95 - . transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS CDS 892144 892155 0.95 - 0 transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS CDS 892634 892744 1 - 0 transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS CDS 893415 893557 0.95 - 2 transcript_id "g146.t1"; gene_id "g146"; >--- 6044,6047 ---- >! chrI AUGUSTUS intron 893558 893611 0.94 - . transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS CDS 892144 892155 0.92 - 0 transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS CDS 892634 892744 0.99 - 0 transcript_id "g146.t1"; gene_id "g146"; >! chrI AUGUSTUS CDS 893415 893557 0.94 - 2 transcript_id "g146.t1"; gene_id "g146"; >*************** >*** 6050 **** >! chrI AUGUSTUS 5'-UTR 893715 893744 0.46 - . transcript_id "g146.t1"; gene_id "g146"; >--- 6050 ---- >! chrI AUGUSTUS 5'-UTR 893715 893744 0.44 - . transcript_id "g146.t1"; gene_id "g146"; >*************** >*** 6066,6067 **** >! chrI AUGUSTUS gene 895329 900854 0.4 - . g147 >! chrI AUGUSTUS transcript 895329 900854 0.4 - . g147.t1 >--- 6066,6067 ---- >! chrI AUGUSTUS gene 895329 900854 0.44 - . g147 >! chrI AUGUSTUS transcript 895329 900854 0.44 - . g147.t1 >*************** >*** 6069 **** >! chrI AUGUSTUS 3'-UTR 895329 895562 0.98 - . transcript_id "g147.t1"; gene_id "g147"; >--- 6069 ---- >! chrI AUGUSTUS 3'-UTR 895329 895562 0.95 - . transcript_id "g147.t1"; gene_id "g147"; >*************** >*** 6089 **** >! chrI AUGUSTUS 5'-UTR 900803 900854 0.41 - . transcript_id "g147.t1"; gene_id "g147"; >--- 6089 ---- >! chrI AUGUSTUS 5'-UTR 900803 900854 0.47 - . transcript_id "g147.t1"; gene_id "g147"; >*************** >*** 6116,6117 **** >! chrI AUGUSTUS gene 901315 903007 0.23 + . g148 >! chrI AUGUSTUS transcript 901315 903007 0.23 + . g148.t1 >--- 6116,6117 ---- >! chrI AUGUSTUS gene 901315 903007 0.26 + . g148 >! chrI AUGUSTUS transcript 901315 903007 0.26 + . g148.t1 >*************** >*** 6119 **** >! chrI AUGUSTUS 5'-UTR 901315 901341 0.49 + . transcript_id "g148.t1"; gene_id "g148"; >--- 6119 ---- >! chrI AUGUSTUS 5'-UTR 901315 901341 0.59 + . transcript_id "g148.t1"; gene_id "g148"; >*************** >*** 6121,6122 **** >! chrI AUGUSTUS initial 901342 901402 0.93 + 0 transcript_id "g148.t1"; gene_id "g148"; >! chrI AUGUSTUS internal 901444 901508 0.92 + 2 transcript_id "g148.t1"; gene_id "g148"; >--- 6121,6122 ---- >! chrI AUGUSTUS initial 901342 901402 0.97 + 0 transcript_id "g148.t1"; gene_id "g148"; >! chrI AUGUSTUS internal 901444 901508 0.96 + 2 transcript_id "g148.t1"; gene_id "g148"; >*************** >*** 6124 **** >! chrI AUGUSTUS internal 902382 902462 0.86 + 0 transcript_id "g148.t1"; gene_id "g148"; >--- 6124 ---- >! chrI AUGUSTUS internal 902382 902462 0.82 + 0 transcript_id "g148.t1"; gene_id "g148"; >*************** >*** 6127,6128 **** >! chrI AUGUSTUS intron 901403 901443 0.92 + . transcript_id "g148.t1"; gene_id "g148"; >! chrI AUGUSTUS intron 901509 902155 0.92 + . transcript_id "g148.t1"; gene_id "g148"; >--- 6127,6128 ---- >! chrI AUGUSTUS intron 901403 901443 0.96 + . transcript_id "g148.t1"; gene_id "g148"; >! chrI AUGUSTUS intron 901509 902155 0.96 + . transcript_id "g148.t1"; gene_id "g148"; >*************** >*** 6130 **** >! chrI AUGUSTUS intron 902463 902664 0.86 + . transcript_id "g148.t1"; gene_id "g148"; >--- 6130 ---- >! chrI AUGUSTUS intron 902463 902664 0.82 + . transcript_id "g148.t1"; gene_id "g148"; >*************** >*** 6132,6133 **** >! chrI AUGUSTUS CDS 901342 901402 0.93 + 0 transcript_id "g148.t1"; gene_id "g148"; >! chrI AUGUSTUS CDS 901444 901508 0.92 + 2 transcript_id "g148.t1"; gene_id "g148"; >--- 6132,6133 ---- >! chrI AUGUSTUS CDS 901342 901402 0.97 + 0 transcript_id "g148.t1"; gene_id "g148"; >! chrI AUGUSTUS CDS 901444 901508 0.96 + 2 transcript_id "g148.t1"; gene_id "g148"; >*************** >*** 6135 **** >! chrI AUGUSTUS CDS 902382 902462 0.86 + 0 transcript_id "g148.t1"; gene_id "g148"; >--- 6135 ---- >! chrI AUGUSTUS CDS 902382 902462 0.82 + 0 transcript_id "g148.t1"; gene_id "g148"; >*************** >*** 6139 **** >! chrI AUGUSTUS 3'-UTR 902976 903007 0.5 + . transcript_id "g148.t1"; gene_id "g148"; >--- 6139 ---- >! chrI AUGUSTUS 3'-UTR 902976 903007 0.54 + . transcript_id "g148.t1"; gene_id "g148"; >*************** >*** 6157,6158 **** >! chrI AUGUSTUS gene 903585 907748 0.29 + . g149 >! chrI AUGUSTUS transcript 903585 907748 0.29 + . g149.t1 >--- 6157,6158 ---- >! chrI AUGUSTUS gene 903585 907748 0.19 + . g149 >! chrI AUGUSTUS transcript 903585 907748 0.19 + . g149.t1 >*************** >*** 6160 **** >! chrI AUGUSTUS 5'-UTR 903585 903635 0.73 + . transcript_id "g149.t1"; gene_id "g149"; >--- 6160 ---- >! chrI AUGUSTUS 5'-UTR 903585 903635 0.64 + . transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6162 **** >! chrI AUGUSTUS initial 903636 903651 1 + 0 transcript_id "g149.t1"; gene_id "g149"; >--- 6162 ---- >! chrI AUGUSTUS initial 903636 903651 0.98 + 0 transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6167,6168 **** >! chrI AUGUSTUS internal 905407 905699 0.91 + 0 transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS internal 906019 906079 0.96 + 1 transcript_id "g149.t1"; gene_id "g149"; >--- 6167,6168 ---- >! chrI AUGUSTUS internal 905407 905699 0.96 + 0 transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS internal 906019 906079 0.95 + 1 transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6170 **** >! chrI AUGUSTUS internal 906369 906522 0.82 + 1 transcript_id "g149.t1"; gene_id "g149"; >--- 6170 ---- >! chrI AUGUSTUS internal 906369 906522 0.81 + 1 transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6172 **** >! chrI AUGUSTUS intron 903652 903780 1 + . transcript_id "g149.t1"; gene_id "g149"; >--- 6172 ---- >! chrI AUGUSTUS intron 903652 903780 0.98 + . transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6176,6177 **** >! chrI AUGUSTUS intron 905330 905406 0.99 + . transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS intron 905700 906018 0.88 + . transcript_id "g149.t1"; gene_id "g149"; >--- 6176,6177 ---- >! chrI AUGUSTUS intron 905330 905406 1 + . transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS intron 905700 906018 0.91 + . transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6179,6181 **** >! chrI AUGUSTUS intron 906306 906368 0.83 + . transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS intron 906523 907278 0.99 + . transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS CDS 903636 903651 1 + 0 transcript_id "g149.t1"; gene_id "g149"; >--- 6179,6181 ---- >! chrI AUGUSTUS intron 906306 906368 0.81 + . transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS intron 906523 907278 1 + . transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS CDS 903636 903651 0.98 + 0 transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6186,6187 **** >! chrI AUGUSTUS CDS 905407 905699 0.91 + 0 transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS CDS 906019 906079 0.96 + 1 transcript_id "g149.t1"; gene_id "g149"; >--- 6186,6187 ---- >! chrI AUGUSTUS CDS 905407 905699 0.96 + 0 transcript_id "g149.t1"; gene_id "g149"; >! chrI AUGUSTUS CDS 906019 906079 0.95 + 1 transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6189 **** >! chrI AUGUSTUS CDS 906369 906522 0.82 + 1 transcript_id "g149.t1"; gene_id "g149"; >--- 6189 ---- >! chrI AUGUSTUS CDS 906369 906522 0.81 + 1 transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6192 **** >! chrI AUGUSTUS 3'-UTR 907711 907748 0.51 + . transcript_id "g149.t1"; gene_id "g149"; >--- 6192 ---- >! chrI AUGUSTUS 3'-UTR 907711 907748 0.53 + . transcript_id "g149.t1"; gene_id "g149"; >*************** >*** 6212,6213 **** >! chrI AUGUSTUS gene 907752 914354 0.08 - . g150 >! chrI AUGUSTUS transcript 907752 914354 0.08 - . g150.t1 >--- 6212,6213 ---- >! chrI AUGUSTUS gene 907752 914354 0.06 - . g150 >! chrI AUGUSTUS transcript 907752 914354 0.06 - . g150.t1 >*************** >*** 6221 **** >! chrI AUGUSTUS initial 913776 914012 0.32 - 0 transcript_id "g150.t1"; gene_id "g150"; >--- 6221 ---- >! chrI AUGUSTUS initial 913776 914012 0.35 - 0 transcript_id "g150.t1"; gene_id "g150"; >*************** >*** 6225 **** >! chrI AUGUSTUS intron 912225 913775 0.96 - . transcript_id "g150.t1"; gene_id "g150"; >--- 6225 ---- >! chrI AUGUSTUS intron 912225 913775 0.92 - . transcript_id "g150.t1"; gene_id "g150"; >*************** >*** 6230 **** >! chrI AUGUSTUS CDS 913776 914012 0.32 - 0 transcript_id "g150.t1"; gene_id "g150"; >--- 6230 ---- >! chrI AUGUSTUS CDS 913776 914012 0.35 - 0 transcript_id "g150.t1"; gene_id "g150"; >*************** >*** 6232 **** >! chrI AUGUSTUS 5'-UTR 914013 914354 0.24 - . transcript_id "g150.t1"; gene_id "g150"; >--- 6232 ---- >! chrI AUGUSTUS 5'-UTR 914013 914354 0.19 - . transcript_id "g150.t1"; gene_id "g150"; >*************** >*** 6250,6251 **** >! chrI AUGUSTUS gene 915175 918861 0.38 + . g151 >! chrI AUGUSTUS transcript 915175 918861 0.38 + . g151.t1 >--- 6250,6251 ---- >! chrI AUGUSTUS gene 915175 918861 0.42 + . g151 >! chrI AUGUSTUS transcript 915175 918861 0.42 + . g151.t1 >*************** >*** 6253 **** >! chrI AUGUSTUS 5'-UTR 915175 915236 0.82 + . transcript_id "g151.t1"; gene_id "g151"; >--- 6253 ---- >! chrI AUGUSTUS 5'-UTR 915175 915236 0.9 + . transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 6255,6256 **** >! chrI AUGUSTUS initial 915237 915292 0.96 + 0 transcript_id "g151.t1"; gene_id "g151"; >! chrI AUGUSTUS internal 915601 915936 0.98 + 1 transcript_id "g151.t1"; gene_id "g151"; >--- 6255,6256 ---- >! chrI AUGUSTUS initial 915237 915292 0.99 + 0 transcript_id "g151.t1"; gene_id "g151"; >! chrI AUGUSTUS internal 915601 915936 1 + 1 transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 6258 **** >! chrI AUGUSTUS internal 916850 917006 0.89 + 1 transcript_id "g151.t1"; gene_id "g151"; >--- 6258 ---- >! chrI AUGUSTUS internal 916850 917006 0.9 + 1 transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 6263,6264 **** >! chrI AUGUSTUS intron 915293 915600 0.98 + . transcript_id "g151.t1"; gene_id "g151"; >! chrI AUGUSTUS intron 915937 915983 0.98 + . transcript_id "g151.t1"; gene_id "g151"; >--- 6263,6264 ---- >! chrI AUGUSTUS intron 915293 915600 1 + . transcript_id "g151.t1"; gene_id "g151"; >! chrI AUGUSTUS intron 915937 915983 1 + . transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 6270,6271 **** >! chrI AUGUSTUS CDS 915237 915292 0.96 + 0 transcript_id "g151.t1"; gene_id "g151"; >! chrI AUGUSTUS CDS 915601 915936 0.98 + 1 transcript_id "g151.t1"; gene_id "g151"; >--- 6270,6271 ---- >! chrI AUGUSTUS CDS 915237 915292 0.99 + 0 transcript_id "g151.t1"; gene_id "g151"; >! chrI AUGUSTUS CDS 915601 915936 1 + 1 transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 6273 **** >! chrI AUGUSTUS CDS 916850 917006 0.89 + 1 transcript_id "g151.t1"; gene_id "g151"; >--- 6273 ---- >! chrI AUGUSTUS CDS 916850 917006 0.9 + 1 transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 6279 **** >! chrI AUGUSTUS 3'-UTR 918808 918861 0.51 + . transcript_id "g151.t1"; gene_id "g151"; >--- 6279 ---- >! chrI AUGUSTUS 3'-UTR 918808 918861 0.52 + . transcript_id "g151.t1"; gene_id "g151"; >*************** >*** 6299,6300 **** >! chrI AUGUSTUS gene 918940 924764 0.09 - . g152 >! chrI AUGUSTUS transcript 918940 924764 0.09 - . g152.t1 >--- 6299,6300 ---- >! chrI AUGUSTUS gene 918940 924764 0.06 - . g152 >! chrI AUGUSTUS transcript 918940 924764 0.06 - . g152.t1 >*************** >*** 6302 **** >! chrI AUGUSTUS 3'-UTR 918940 918964 0.21 - . transcript_id "g152.t1"; gene_id "g152"; >--- 6302 ---- >! chrI AUGUSTUS 3'-UTR 918940 918964 0.26 - . transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 6305,6306 **** >! chrI AUGUSTUS internal 919516 919720 0.35 - 1 transcript_id "g152.t1"; gene_id "g152"; >! chrI AUGUSTUS internal 921374 921951 0.57 - 0 transcript_id "g152.t1"; gene_id "g152"; >--- 6305,6306 ---- >! chrI AUGUSTUS internal 919516 919720 0.39 - 1 transcript_id "g152.t1"; gene_id "g152"; >! chrI AUGUSTUS internal 921374 921951 0.71 - 0 transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 6308 **** >! chrI AUGUSTUS internal 923818 924537 0.99 - 0 transcript_id "g152.t1"; gene_id "g152"; >--- 6308 ---- >! chrI AUGUSTUS internal 923818 924537 0.95 - 0 transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 6311 **** >! chrI AUGUSTUS intron 919721 921373 0.47 - . transcript_id "g152.t1"; gene_id "g152"; >--- 6311 ---- >! chrI AUGUSTUS intron 919721 921373 0.5 - . transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 6313 **** >! chrI AUGUSTUS intron 923169 923817 0.99 - . transcript_id "g152.t1"; gene_id "g152"; >--- 6313 ---- >! chrI AUGUSTUS intron 923169 923817 0.95 - . transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 6316,6317 **** >! chrI AUGUSTUS CDS 919516 919720 0.35 - 1 transcript_id "g152.t1"; gene_id "g152"; >! chrI AUGUSTUS CDS 921374 921951 0.57 - 0 transcript_id "g152.t1"; gene_id "g152"; >--- 6316,6317 ---- >! chrI AUGUSTUS CDS 919516 919720 0.39 - 1 transcript_id "g152.t1"; gene_id "g152"; >! chrI AUGUSTUS CDS 921374 921951 0.71 - 0 transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 6319 **** >! chrI AUGUSTUS CDS 923818 924537 0.99 - 0 transcript_id "g152.t1"; gene_id "g152"; >--- 6319 ---- >! chrI AUGUSTUS CDS 923818 924537 0.95 - 0 transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 6322 **** >! chrI AUGUSTUS 5'-UTR 924696 924764 0.26 - . transcript_id "g152.t1"; gene_id "g152"; >--- 6322 ---- >! chrI AUGUSTUS 5'-UTR 924696 924764 0.19 - . transcript_id "g152.t1"; gene_id "g152"; >*************** >*** 6344,6345 **** >! chrI AUGUSTUS gene 925125 929719 0.1 + . g153 >! chrI AUGUSTUS transcript 925125 929719 0.1 + . g153.t1 >--- 6344,6345 ---- >! chrI AUGUSTUS gene 925125 929719 0.11 + . g153 >! chrI AUGUSTUS transcript 925125 929719 0.11 + . g153.t1 >*************** >*** 6347 **** >! chrI AUGUSTUS 5'-UTR 925125 925245 0.84 + . transcript_id "g153.t1"; gene_id "g153"; >--- 6347 ---- >! chrI AUGUSTUS 5'-UTR 925125 925245 0.83 + . transcript_id "g153.t1"; gene_id "g153"; >*************** >*** 6351 **** >! chrI AUGUSTUS internal 925715 925945 0.52 + 0 transcript_id "g153.t1"; gene_id "g153"; >--- 6351 ---- >! chrI AUGUSTUS internal 925715 925945 0.64 + 0 transcript_id "g153.t1"; gene_id "g153"; >*************** >*** 6353,6355 **** >! chrI AUGUSTUS internal 926826 926913 1 + 0 transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS internal 926957 927026 1 + 2 transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS internal 927682 927941 0.93 + 1 transcript_id "g153.t1"; gene_id "g153"; >--- 6353,6355 ---- >! chrI AUGUSTUS internal 926826 926913 0.99 + 0 transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS internal 926957 927026 0.99 + 2 transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS internal 927682 927941 0.91 + 1 transcript_id "g153.t1"; gene_id "g153"; >*************** >*** 6361,6364 **** >! chrI AUGUSTUS intron 925664 925714 0.53 + . transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS intron 925946 926559 0.55 + . transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS intron 926779 926825 0.99 + . transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS intron 926914 926956 1 + . transcript_id "g153.t1"; gene_id "g153"; >--- 6361,6364 ---- >! chrI AUGUSTUS intron 925664 925714 0.64 + . transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS intron 925946 926559 0.66 + . transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS intron 926779 926825 0.98 + . transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS intron 926914 926956 0.99 + . transcript_id "g153.t1"; gene_id "g153"; >*************** >*** 6366,6367 **** >! chrI AUGUSTUS intron 927942 928395 0.92 + . transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS intron 928453 928509 0.99 + . transcript_id "g153.t1"; gene_id "g153"; >--- 6366,6367 ---- >! chrI AUGUSTUS intron 927942 928395 0.91 + . transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS intron 928453 928509 1 + . transcript_id "g153.t1"; gene_id "g153"; >*************** >*** 6372 **** >! chrI AUGUSTUS CDS 925715 925945 0.52 + 0 transcript_id "g153.t1"; gene_id "g153"; >--- 6372 ---- >! chrI AUGUSTUS CDS 925715 925945 0.64 + 0 transcript_id "g153.t1"; gene_id "g153"; >*************** >*** 6374,6376 **** >! chrI AUGUSTUS CDS 926826 926913 1 + 0 transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS CDS 926957 927026 1 + 2 transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS CDS 927682 927941 0.93 + 1 transcript_id "g153.t1"; gene_id "g153"; >--- 6374,6376 ---- >! chrI AUGUSTUS CDS 926826 926913 0.99 + 0 transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS CDS 926957 927026 0.99 + 2 transcript_id "g153.t1"; gene_id "g153"; >! chrI AUGUSTUS CDS 927682 927941 0.91 + 1 transcript_id "g153.t1"; gene_id "g153"; >*************** >*** 6382 **** >! chrI AUGUSTUS 3'-UTR 929353 929719 0.31 + . transcript_id "g153.t1"; gene_id "g153"; >--- 6382 ---- >! chrI AUGUSTUS 3'-UTR 929353 929719 0.29 + . transcript_id "g153.t1"; gene_id "g153"; >*************** >*** 6404,6405 **** >! chrI AUGUSTUS gene 929805 931362 0.26 + . g154 >! chrI AUGUSTUS transcript 929805 931362 0.26 + . g154.t1 >--- 6404,6405 ---- >! chrI AUGUSTUS gene 929805 931362 0.27 + . g154 >! chrI AUGUSTUS transcript 929805 931362 0.27 + . g154.t1 >*************** >*** 6407 **** >! chrI AUGUSTUS 5'-UTR 929805 929840 0.53 + . transcript_id "g154.t1"; gene_id "g154"; >--- 6407 ---- >! chrI AUGUSTUS 5'-UTR 929805 929840 0.49 + . transcript_id "g154.t1"; gene_id "g154"; >*************** >*** 6409,6410 **** >! chrI AUGUSTUS initial 929841 929885 0.88 + 0 transcript_id "g154.t1"; gene_id "g154"; >! chrI AUGUSTUS internal 929947 930089 0.84 + 0 transcript_id "g154.t1"; gene_id "g154"; >--- 6409,6410 ---- >! chrI AUGUSTUS initial 929841 929885 0.78 + 0 transcript_id "g154.t1"; gene_id "g154"; >! chrI AUGUSTUS internal 929947 930089 0.83 + 0 transcript_id "g154.t1"; gene_id "g154"; >*************** >*** 6412 **** >! chrI AUGUSTUS terminal 931224 931256 0.84 + 0 transcript_id "g154.t1"; gene_id "g154"; >--- 6412 ---- >! chrI AUGUSTUS terminal 931224 931256 0.85 + 0 transcript_id "g154.t1"; gene_id "g154"; >*************** >*** 6414,6417 **** >! chrI AUGUSTUS intron 930090 930174 0.84 + . transcript_id "g154.t1"; gene_id "g154"; >! chrI AUGUSTUS intron 930368 931223 0.84 + . transcript_id "g154.t1"; gene_id "g154"; >! chrI AUGUSTUS CDS 929841 929885 0.88 + 0 transcript_id "g154.t1"; gene_id "g154"; >! chrI AUGUSTUS CDS 929947 930089 0.84 + 0 transcript_id "g154.t1"; gene_id "g154"; >--- 6414,6417 ---- >! chrI AUGUSTUS intron 930090 930174 0.83 + . transcript_id "g154.t1"; gene_id "g154"; >! chrI AUGUSTUS intron 930368 931223 0.85 + . transcript_id "g154.t1"; gene_id "g154"; >! chrI AUGUSTUS CDS 929841 929885 0.78 + 0 transcript_id "g154.t1"; gene_id "g154"; >! chrI AUGUSTUS CDS 929947 930089 0.83 + 0 transcript_id "g154.t1"; gene_id "g154"; >*************** >*** 6419 **** >! chrI AUGUSTUS CDS 931224 931256 0.84 + 0 transcript_id "g154.t1"; gene_id "g154"; >--- 6419 ---- >! chrI AUGUSTUS CDS 931224 931256 0.85 + 0 transcript_id "g154.t1"; gene_id "g154"; >*************** >*** 6421 **** >! chrI AUGUSTUS 3'-UTR 931257 931362 0.65 + . transcript_id "g154.t1"; gene_id "g154"; >--- 6421 ---- >! chrI AUGUSTUS 3'-UTR 931257 931362 0.6 + . transcript_id "g154.t1"; gene_id "g154"; >*************** >*** 6437,6438 **** >! chrI AUGUSTUS gene 931425 939478 0.24 + . g155 >! chrI AUGUSTUS transcript 931425 939478 0.24 + . g155.t1 >--- 6437,6438 ---- >! chrI AUGUSTUS gene 931425 939478 0.2 + . g155 >! chrI AUGUSTUS transcript 931425 939478 0.2 + . g155.t1 >*************** >*** 6440 **** >! chrI AUGUSTUS 5'-UTR 931425 931461 0.59 + . transcript_id "g155.t1"; gene_id "g155"; >--- 6440 ---- >! chrI AUGUSTUS 5'-UTR 931425 931461 0.54 + . transcript_id "g155.t1"; gene_id "g155"; >*************** >*** 6449,6451 **** >! chrI AUGUSTUS internal 937759 937919 0.97 + 0 transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS internal 938443 938677 0.43 + 1 transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS terminal 939448 939453 0.62 + 0 transcript_id "g155.t1"; gene_id "g155"; >--- 6449,6451 ---- >! chrI AUGUSTUS internal 937759 937919 0.94 + 0 transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS internal 938443 938677 0.37 + 1 transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS terminal 939448 939453 0.64 + 0 transcript_id "g155.t1"; gene_id "g155"; >*************** >*** 6459,6460 **** >! chrI AUGUSTUS intron 937920 938442 0.97 + . transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS intron 938678 939447 0.43 + . transcript_id "g155.t1"; gene_id "g155"; >--- 6459,6460 ---- >! chrI AUGUSTUS intron 937920 938442 0.94 + . transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS intron 938678 939447 0.39 + . transcript_id "g155.t1"; gene_id "g155"; >*************** >*** 6468,6470 **** >! chrI AUGUSTUS CDS 937759 937919 0.97 + 0 transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS CDS 938443 938677 0.43 + 1 transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS CDS 939448 939453 0.62 + 0 transcript_id "g155.t1"; gene_id "g155"; >--- 6468,6470 ---- >! chrI AUGUSTUS CDS 937759 937919 0.94 + 0 transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS CDS 938443 938677 0.37 + 1 transcript_id "g155.t1"; gene_id "g155"; >! chrI AUGUSTUS CDS 939448 939453 0.64 + 0 transcript_id "g155.t1"; gene_id "g155"; >*************** >*** 6472 **** >! chrI AUGUSTUS 3'-UTR 939454 939478 0.58 + . transcript_id "g155.t1"; gene_id "g155"; >--- 6472 ---- >! chrI AUGUSTUS 3'-UTR 939454 939478 0.63 + . transcript_id "g155.t1"; gene_id "g155"; >*************** >*** 6492,6493 **** >! chrI AUGUSTUS gene 939485 940284 0.21 - . g156 >! chrI AUGUSTUS transcript 939485 940284 0.21 - . g156.t1 >--- 6492,6493 ---- >! chrI AUGUSTUS gene 939485 940284 0.22 - . g156 >! chrI AUGUSTUS transcript 939485 940284 0.22 - . g156.t1 >*************** >*** 6495 **** >! chrI AUGUSTUS 3'-UTR 939485 939519 0.68 - . transcript_id "g156.t1"; gene_id "g156"; >--- 6495 ---- >! chrI AUGUSTUS 3'-UTR 939485 939519 0.74 - . transcript_id "g156.t1"; gene_id "g156"; >*************** >*** 6497,6501 **** >! chrI AUGUSTUS terminal 939520 939744 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; >! chrI AUGUSTUS initial 940165 940236 0.96 - 0 transcript_id "g156.t1"; gene_id "g156"; >! chrI AUGUSTUS intron 939745 940164 0.95 - . transcript_id "g156.t1"; gene_id "g156"; >! chrI AUGUSTUS CDS 939520 939744 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; >! chrI AUGUSTUS CDS 940165 940236 0.96 - 0 transcript_id "g156.t1"; gene_id "g156"; >--- 6497,6501 ---- >! chrI AUGUSTUS terminal 939520 939744 1 - 0 transcript_id "g156.t1"; gene_id "g156"; >! chrI AUGUSTUS initial 940165 940236 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; >! chrI AUGUSTUS intron 939745 940164 0.99 - . transcript_id "g156.t1"; gene_id "g156"; >! chrI AUGUSTUS CDS 939520 939744 1 - 0 transcript_id "g156.t1"; gene_id "g156"; >! chrI AUGUSTUS CDS 940165 940236 0.99 - 0 transcript_id "g156.t1"; gene_id "g156"; >*************** >*** 6503 **** >! chrI AUGUSTUS 5'-UTR 940237 940284 0.35 - . transcript_id "g156.t1"; gene_id "g156"; >--- 6503 ---- >! chrI AUGUSTUS 5'-UTR 940237 940284 0.32 - . transcript_id "g156.t1"; gene_id "g156"; >*************** >*** 6518,6519 **** >! chrI AUGUSTUS gene 940906 941734 0.29 - . g157 >! chrI AUGUSTUS transcript 940906 941734 0.29 - . g157.t1 >--- 6518,6519 ---- >! chrI AUGUSTUS gene 940906 941734 0.37 - . g157 >! chrI AUGUSTUS transcript 940906 941734 0.37 - . g157.t1 >*************** >*** 6521 **** >! chrI AUGUSTUS 3'-UTR 940906 940969 0.84 - . transcript_id "g157.t1"; gene_id "g157"; >--- 6521 ---- >! chrI AUGUSTUS 3'-UTR 940906 940969 0.83 - . transcript_id "g157.t1"; gene_id "g157"; >*************** >*** 6524 **** >! chrI AUGUSTUS initial 941485 941673 0.97 - 0 transcript_id "g157.t1"; gene_id "g157"; >--- 6524 ---- >! chrI AUGUSTUS initial 941485 941673 0.99 - 0 transcript_id "g157.t1"; gene_id "g157"; >*************** >*** 6527 **** >! chrI AUGUSTUS CDS 941485 941673 0.97 - 0 transcript_id "g157.t1"; gene_id "g157"; >--- 6527 ---- >! chrI AUGUSTUS CDS 941485 941673 0.99 - 0 transcript_id "g157.t1"; gene_id "g157"; >*************** >*** 6529 **** >! chrI AUGUSTUS 5'-UTR 941674 941734 0.35 - . transcript_id "g157.t1"; gene_id "g157"; >--- 6529 ---- >! chrI AUGUSTUS 5'-UTR 941674 941734 0.45 - . transcript_id "g157.t1"; gene_id "g157"; >*************** >*** 6545,6546 **** >! chrI AUGUSTUS gene 942875 947107 0.07 + . g158 >! chrI AUGUSTUS transcript 942875 947107 0.07 + . g158.t1 >--- 6545,6546 ---- >! chrI AUGUSTUS gene 942875 947107 0.08 + . g158 >! chrI AUGUSTUS transcript 942875 947107 0.08 + . g158.t1 >*************** >*** 6548 **** >! chrI AUGUSTUS 5'-UTR 942875 942902 0.29 + . transcript_id "g158.t1"; gene_id "g158"; >--- 6548 ---- >! chrI AUGUSTUS 5'-UTR 942875 942902 0.25 + . transcript_id "g158.t1"; gene_id "g158"; >*************** >*** 6550,6553 **** >! chrI AUGUSTUS initial 942903 943021 0.78 + 0 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS internal 943078 943204 1 + 1 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS internal 944077 944223 1 + 0 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS internal 944275 944382 0.96 + 0 transcript_id "g158.t1"; gene_id "g158"; >--- 6550,6553 ---- >! chrI AUGUSTUS initial 942903 943021 0.6 + 0 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS internal 943078 943204 0.98 + 1 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS internal 944077 944223 0.98 + 0 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS internal 944275 944382 0.95 + 0 transcript_id "g158.t1"; gene_id "g158"; >*************** >*** 6555,6556 **** >! chrI AUGUSTUS intron 943022 943077 0.83 + . transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS intron 943205 944076 1 + . transcript_id "g158.t1"; gene_id "g158"; >--- 6555,6556 ---- >! chrI AUGUSTUS intron 943022 943077 0.78 + . transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS intron 943205 944076 0.98 + . transcript_id "g158.t1"; gene_id "g158"; >*************** >*** 6559,6562 **** >! chrI AUGUSTUS CDS 942903 943021 0.78 + 0 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS CDS 943078 943204 1 + 1 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS CDS 944077 944223 1 + 0 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS CDS 944275 944382 0.96 + 0 transcript_id "g158.t1"; gene_id "g158"; >--- 6559,6562 ---- >! chrI AUGUSTUS CDS 942903 943021 0.6 + 0 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS CDS 943078 943204 0.98 + 1 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS CDS 944077 944223 0.98 + 0 transcript_id "g158.t1"; gene_id "g158"; >! chrI AUGUSTUS CDS 944275 944382 0.95 + 0 transcript_id "g158.t1"; gene_id "g158"; >*************** >*** 6565 **** >! chrI AUGUSTUS 3'-UTR 946939 947107 0.36 + . transcript_id "g158.t1"; gene_id "g158"; >--- 6565 ---- >! chrI AUGUSTUS 3'-UTR 946939 947107 0.44 + . transcript_id "g158.t1"; gene_id "g158"; >*************** >*** 6583,6584 **** >! chrI AUGUSTUS gene 948405 948752 0.9 + . g159 >! chrI AUGUSTUS transcript 948405 948752 0.9 + . g159.t1 >--- 6583,6584 ---- >! chrI AUGUSTUS gene 948405 948752 0.89 + . g159 >! chrI AUGUSTUS transcript 948405 948752 0.89 + . g159.t1 >*************** >*** 6591 **** >! chrI AUGUSTUS 3'-UTR 948694 948752 1 + . transcript_id "g159.t1"; gene_id "g159"; >--- 6591 ---- >! chrI AUGUSTUS 3'-UTR 948694 948752 0.99 + . transcript_id "g159.t1"; gene_id "g159"; >*************** >*** 6606,6607 **** >! chrI AUGUSTUS gene 949597 957954 0.17 - . g160 >! chrI AUGUSTUS transcript 949597 957954 0.17 - . g160.t1 >--- 6606,6607 ---- >! chrI AUGUSTUS gene 949597 957954 0.21 - . g160 >! chrI AUGUSTUS transcript 949597 957954 0.21 - . g160.t1 >*************** >*** 6609 **** >! chrI AUGUSTUS 3'-UTR 949597 949975 1 - . transcript_id "g160.t1"; gene_id "g160"; >--- 6609 ---- >! chrI AUGUSTUS 3'-UTR 949597 949975 0.99 - . transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6615 **** >! chrI AUGUSTUS internal 951673 951770 0.99 - 2 transcript_id "g160.t1"; gene_id "g160"; >--- 6615 ---- >! chrI AUGUSTUS internal 951673 951770 0.96 - 2 transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6618,6619 **** >! chrI AUGUSTUS internal 953080 953972 0.93 - 1 transcript_id "g160.t1"; gene_id "g160"; >! chrI AUGUSTUS internal 954834 954944 0.83 - 1 transcript_id "g160.t1"; gene_id "g160"; >--- 6618,6619 ---- >! chrI AUGUSTUS internal 953080 953972 0.92 - 1 transcript_id "g160.t1"; gene_id "g160"; >! chrI AUGUSTUS internal 954834 954944 0.85 - 1 transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6628 **** >! chrI AUGUSTUS intron 951771 951882 0.99 - . transcript_id "g160.t1"; gene_id "g160"; >--- 6628 ---- >! chrI AUGUSTUS intron 951771 951882 0.96 - . transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6630 **** >! chrI AUGUSTUS intron 952349 953079 1 - . transcript_id "g160.t1"; gene_id "g160"; >--- 6630 ---- >! chrI AUGUSTUS intron 952349 953079 0.99 - . transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6632 **** >! chrI AUGUSTUS intron 954945 955331 0.84 - . transcript_id "g160.t1"; gene_id "g160"; >--- 6632 ---- >! chrI AUGUSTUS intron 954945 955331 0.86 - . transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6635 **** >! chrI AUGUSTUS intron 956974 957792 0.99 - . transcript_id "g160.t1"; gene_id "g160"; >--- 6635 ---- >! chrI AUGUSTUS intron 956974 957792 0.95 - . transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6640 **** >! chrI AUGUSTUS CDS 951673 951770 0.99 - 2 transcript_id "g160.t1"; gene_id "g160"; >--- 6640 ---- >! chrI AUGUSTUS CDS 951673 951770 0.96 - 2 transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6643,6644 **** >! chrI AUGUSTUS CDS 953080 953972 0.93 - 1 transcript_id "g160.t1"; gene_id "g160"; >! chrI AUGUSTUS CDS 954834 954944 0.83 - 1 transcript_id "g160.t1"; gene_id "g160"; >--- 6643,6644 ---- >! chrI AUGUSTUS CDS 953080 953972 0.92 - 1 transcript_id "g160.t1"; gene_id "g160"; >! chrI AUGUSTUS CDS 954834 954944 0.85 - 1 transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6650 **** >! chrI AUGUSTUS 5'-UTR 957869 957954 0.24 - . transcript_id "g160.t1"; gene_id "g160"; >--- 6650 ---- >! chrI AUGUSTUS 5'-UTR 957869 957954 0.29 - . transcript_id "g160.t1"; gene_id "g160"; >*************** >*** 6675,6676 **** >! chrI AUGUSTUS gene 981656 995734 0.01 - . g161 >! chrI AUGUSTUS transcript 981656 995734 0.01 - . g161.t1 >--- 6675,6676 ---- >! chrI AUGUSTUS gene 981656 995734 0.03 - . g161 >! chrI AUGUSTUS transcript 981656 995734 0.03 - . g161.t1 >*************** >*** 6678 **** >! chrI AUGUSTUS 3'-UTR 981656 981735 0.19 - . transcript_id "g161.t1"; gene_id "g161"; >--- 6678 ---- >! chrI AUGUSTUS 3'-UTR 981656 981735 0.18 - . transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6682,6683 **** >! chrI AUGUSTUS internal 983001 983077 0.8 - 1 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 983372 983532 0.6 - 0 transcript_id "g161.t1"; gene_id "g161"; >--- 6682,6683 ---- >! chrI AUGUSTUS internal 983001 983077 0.79 - 1 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 983372 983532 0.53 - 0 transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6685,6689 **** >! chrI AUGUSTUS internal 984767 984980 0.88 - 2 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 986241 986383 0.96 - 1 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 986993 987063 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 987131 987195 0.91 - 2 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 987242 987380 0.88 - 0 transcript_id "g161.t1"; gene_id "g161"; >--- 6685,6689 ---- >! chrI AUGUSTUS internal 984767 984980 0.78 - 2 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 986241 986383 0.94 - 1 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 986993 987063 1 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 987131 987195 0.94 - 2 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 987242 987380 0.9 - 0 transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6692 **** >! chrI AUGUSTUS internal 988709 988819 0.95 - 1 transcript_id "g161.t1"; gene_id "g161"; >--- 6692 ---- >! chrI AUGUSTUS internal 988709 988819 0.99 - 1 transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6695,6698 **** >! chrI AUGUSTUS internal 993912 994349 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 995246 995419 1 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 995482 995544 0.71 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS initial 995593 995700 0.61 - 0 transcript_id "g161.t1"; gene_id "g161"; >--- 6695,6698 ---- >! chrI AUGUSTUS internal 993912 994349 1 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 995246 995419 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS internal 995482 995544 0.74 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS initial 995593 995700 0.55 - 0 transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6700,6701 **** >! chrI AUGUSTUS intron 982116 983000 0.98 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 983078 983371 0.65 - . transcript_id "g161.t1"; gene_id "g161"; >--- 6700,6701 ---- >! chrI AUGUSTUS intron 982116 983000 0.99 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 983078 983371 0.58 - . transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6703,6708 **** >! chrI AUGUSTUS intron 984185 984766 0.88 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 984981 986240 0.96 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 986384 986992 0.99 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 987064 987130 0.91 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 987196 987241 0.93 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 987381 988234 0.91 - . transcript_id "g161.t1"; gene_id "g161"; >--- 6703,6708 ---- >! chrI AUGUSTUS intron 984185 984766 0.8 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 984981 986240 0.92 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 986384 986992 1 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 987064 987130 0.94 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 987196 987241 0.97 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 987381 988234 0.9 - . transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6710,6711 **** >! chrI AUGUSTUS intron 988666 988708 0.96 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 988820 990663 0.95 - . transcript_id "g161.t1"; gene_id "g161"; >--- 6710,6711 ---- >! chrI AUGUSTUS intron 988666 988708 0.99 - . transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS intron 988820 990663 0.99 - . transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6714 **** >! chrI AUGUSTUS intron 994350 995245 1 - . transcript_id "g161.t1"; gene_id "g161"; >--- 6714 ---- >! chrI AUGUSTUS intron 994350 995245 0.99 - . transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6716 **** >! chrI AUGUSTUS intron 995545 995592 0.7 - . transcript_id "g161.t1"; gene_id "g161"; >--- 6716 ---- >! chrI AUGUSTUS intron 995545 995592 0.74 - . transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6719,6720 **** >! chrI AUGUSTUS CDS 983001 983077 0.8 - 1 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 983372 983532 0.6 - 0 transcript_id "g161.t1"; gene_id "g161"; >--- 6719,6720 ---- >! chrI AUGUSTUS CDS 983001 983077 0.79 - 1 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 983372 983532 0.53 - 0 transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6722,6726 **** >! chrI AUGUSTUS CDS 984767 984980 0.88 - 2 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 986241 986383 0.96 - 1 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 986993 987063 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 987131 987195 0.91 - 2 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 987242 987380 0.88 - 0 transcript_id "g161.t1"; gene_id "g161"; >--- 6722,6726 ---- >! chrI AUGUSTUS CDS 984767 984980 0.78 - 2 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 986241 986383 0.94 - 1 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 986993 987063 1 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 987131 987195 0.94 - 2 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 987242 987380 0.9 - 0 transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6729 **** >! chrI AUGUSTUS CDS 988709 988819 0.95 - 1 transcript_id "g161.t1"; gene_id "g161"; >--- 6729 ---- >! chrI AUGUSTUS CDS 988709 988819 0.99 - 1 transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6732,6735 **** >! chrI AUGUSTUS CDS 993912 994349 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 995246 995419 1 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 995482 995544 0.71 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 995593 995700 0.61 - 0 transcript_id "g161.t1"; gene_id "g161"; >--- 6732,6735 ---- >! chrI AUGUSTUS CDS 993912 994349 1 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 995246 995419 0.99 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 995482 995544 0.74 - 0 transcript_id "g161.t1"; gene_id "g161"; >! chrI AUGUSTUS CDS 995593 995700 0.55 - 0 transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6737 **** >! chrI AUGUSTUS 5'-UTR 995701 995734 0.34 - . transcript_id "g161.t1"; gene_id "g161"; >--- 6737 ---- >! chrI AUGUSTUS 5'-UTR 995701 995734 0.35 - . transcript_id "g161.t1"; gene_id "g161"; >*************** >*** 6762,6763 **** >! chrI AUGUSTUS gene 996325 999559 0.22 + . g162 >! chrI AUGUSTUS transcript 996325 999559 0.22 + . g162.t1 >--- 6762,6763 ---- >! chrI AUGUSTUS gene 996325 999559 0.29 + . g162 >! chrI AUGUSTUS transcript 996325 999559 0.29 + . g162.t1 >*************** >*** 6765 **** >! chrI AUGUSTUS 5'-UTR 996325 996510 0.34 + . transcript_id "g162.t1"; gene_id "g162"; >--- 6765 ---- >! chrI AUGUSTUS 5'-UTR 996325 996510 0.38 + . transcript_id "g162.t1"; gene_id "g162"; >*************** >*** 6770 **** >! chrI AUGUSTUS terminal 999166 999520 0.97 + 1 transcript_id "g162.t1"; gene_id "g162"; >--- 6770 ---- >! chrI AUGUSTUS terminal 999166 999520 0.99 + 1 transcript_id "g162.t1"; gene_id "g162"; >*************** >*** 6777 **** >! chrI AUGUSTUS CDS 999166 999520 0.97 + 1 transcript_id "g162.t1"; gene_id "g162"; >--- 6777 ---- >! chrI AUGUSTUS CDS 999166 999520 0.99 + 1 transcript_id "g162.t1"; gene_id "g162"; >*************** >*** 6779 **** >! chrI AUGUSTUS 3'-UTR 999521 999559 0.81 + . transcript_id "g162.t1"; gene_id "g162"; >--- 6779 ---- >! chrI AUGUSTUS 3'-UTR 999521 999559 0.85 + . transcript_id "g162.t1"; gene_id "g162"; > > >====================================================================== >FAIL: test_format_and_error_out (__main__.TestAugustus) >---------------------------------------------------------------------- >Traceback (most recent call last): > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 505, in test_format_and_error_out > self.assertEqualFolders(reffolder, resfolder) > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders > self.assertEqual(diff, '', diff) >AssertionError: '*** expected_results/test_format_and_erro[264026 chars]t1\n' != '' : *** expected_results/test_format_and_error_out/augustus.gff3 >--- results/test_format_and_error_out/augustus.gff3 >*************** >*** 5,17 **** >! chrI AUGUSTUS gene 1 10595 0.13 - . ID=g1 >! chrI AUGUSTUS transcript 1 10595 0.13 - . ID=g1.t1;Parent=g1 >! chrI AUGUSTUS intron 1 126 0.48 - . Parent=g1.t1 >! chrI AUGUSTUS intron 218 1066 0.62 - . Parent=g1.t1 >! chrI AUGUSTUS intron 1196 6131 0.99 - . Parent=g1.t1 >! chrI AUGUSTUS intron 6307 7323 0.99 - . Parent=g1.t1 >! chrI AUGUSTUS intron 7569 8589 0.91 - . Parent=g1.t1 >! chrI AUGUSTUS intron 8773 9831 0.99 - . Parent=g1.t1 >! chrI AUGUSTUS intron 9962 10005 0.87 - . Parent=g1.t1 >! chrI AUGUSTUS intron 10101 10166 0.57 - . Parent=g1.t1 >! chrI AUGUSTUS intron 10260 10421 0.57 - . Parent=g1.t1 >! chrI AUGUSTUS CDS 127 217 0.53 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 1067 1195 0.99 - 0 ID=g1.t1.cds;Parent=g1.t1 >--- 5,17 ---- >! chrI AUGUSTUS gene 1 10595 0.16 - . ID=g1 >! chrI AUGUSTUS transcript 1 10595 0.16 - . ID=g1.t1;Parent=g1 >! chrI AUGUSTUS intron 1 126 0.55 - . Parent=g1.t1 >! chrI AUGUSTUS intron 218 1066 0.65 - . Parent=g1.t1 >! chrI AUGUSTUS intron 1196 6131 1 - . Parent=g1.t1 >! chrI AUGUSTUS intron 6307 7323 0.98 - . Parent=g1.t1 >! chrI AUGUSTUS intron 7569 8589 0.84 - . Parent=g1.t1 >! chrI AUGUSTUS intron 8773 9831 0.97 - . Parent=g1.t1 >! chrI AUGUSTUS intron 9962 10005 0.89 - . Parent=g1.t1 >! chrI AUGUSTUS intron 10101 10166 0.63 - . Parent=g1.t1 >! chrI AUGUSTUS intron 10260 10421 0.59 - . Parent=g1.t1 >! chrI AUGUSTUS CDS 127 217 0.57 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 1067 1195 1 - 0 ID=g1.t1.cds;Parent=g1.t1 >*************** >*** 19,24 **** >! chrI AUGUSTUS CDS 7324 7568 0.96 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 8590 8772 0.84 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 9832 9961 0.99 - 1 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 10006 10100 0.87 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 10167 10259 0.57 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 10422 10481 0.85 - 0 ID=g1.t1.cds;Parent=g1.t1 >--- 19,24 ---- >! chrI AUGUSTUS CDS 7324 7568 0.93 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 8590 8772 0.72 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 9832 9961 0.97 - 1 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 10006 10100 0.89 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 10167 10259 0.63 - 0 ID=g1.t1.cds;Parent=g1.t1 >! chrI AUGUSTUS CDS 10422 10481 0.84 - 0 ID=g1.t1.cds;Parent=g1.t1 >*************** >*** 26 **** >! chrI AUGUSTUS five_prime_utr 10482 10595 0.62 - . Parent=g1.t1 >--- 26 ---- >! chrI AUGUSTUS five_prime_utr 10482 10595 0.72 - . Parent=g1.t1 >*************** >*** 45,46 **** >! chrI AUGUSTUS gene 26176 33836 0.03 + . ID=g2 >! chrI AUGUSTUS transcript 26176 33836 0.03 + . ID=g2.t1;Parent=g2 >--- 45,46 ---- >! chrI AUGUSTUS gene 26176 33836 0.02 + . ID=g2 >! chrI AUGUSTUS transcript 26176 33836 0.02 + . ID=g2.t1;Parent=g2 >*************** >*** 48 **** >! chrI AUGUSTUS five_prime_utr 26176 26414 0.27 + . Parent=g2.t1 >--- 48 ---- >! chrI AUGUSTUS five_prime_utr 26176 26414 0.43 + . Parent=g2.t1 >*************** >*** 52,53 **** >! chrI AUGUSTUS intron 28340 28390 0.98 + . Parent=g2.t1 >! chrI AUGUSTUS intron 28597 29675 0.92 + . Parent=g2.t1 >--- 52,53 ---- >! chrI AUGUSTUS intron 28340 28390 1 + . Parent=g2.t1 >! chrI AUGUSTUS intron 28597 29675 0.89 + . Parent=g2.t1 >*************** >*** 55,57 **** >! chrI AUGUSTUS intron 32130 33276 0.56 + . Parent=g2.t1 >! chrI AUGUSTUS intron 33380 33640 0.4 + . Parent=g2.t1 >! chrI AUGUSTUS CDS 26415 26516 0.62 + 0 ID=g2.t1.cds;Parent=g2.t1 >--- 55,57 ---- >! chrI AUGUSTUS intron 32130 33276 0.64 + . Parent=g2.t1 >! chrI AUGUSTUS intron 33380 33640 0.36 + . Parent=g2.t1 >! chrI AUGUSTUS CDS 26415 26516 0.75 + 0 ID=g2.t1.cds;Parent=g2.t1 >*************** >*** 59,64 **** >! chrI AUGUSTUS CDS 28208 28339 0.99 + 0 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 28391 28596 0.9 + 0 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 29676 30014 0.52 + 1 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 31652 32129 0.98 + 1 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 33277 33379 0.41 + 0 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 33641 33660 0.4 + 2 ID=g2.t1.cds;Parent=g2.t1 >--- 59,64 ---- >! chrI AUGUSTUS CDS 28208 28339 1 + 0 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 28391 28596 0.89 + 0 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 29676 30014 0.49 + 1 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 31652 32129 1 + 1 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 33277 33379 0.36 + 0 ID=g2.t1.cds;Parent=g2.t1 >! chrI AUGUSTUS CDS 33641 33660 0.36 + 2 ID=g2.t1.cds;Parent=g2.t1 >*************** >*** 66 **** >! chrI AUGUSTUS three_prime_utr 33661 33836 0.17 + . Parent=g2.t1 >--- 66 ---- >! chrI AUGUSTUS three_prime_utr 33661 33836 0.13 + . Parent=g2.t1 >*************** >*** 90 **** >! chrI AUGUSTUS three_prime_utr 34327 34532 0.63 - . Parent=g3.t1 >--- 90 ---- >! chrI AUGUSTUS three_prime_utr 34327 34532 0.65 - . Parent=g3.t1 >*************** >*** 92 **** >! chrI AUGUSTUS intron 34713 35685 0.69 - . Parent=g3.t1 >--- 92 ---- >! chrI AUGUSTUS intron 34713 35685 0.75 - . Parent=g3.t1 >*************** >*** 95,99 **** >! chrI AUGUSTUS intron 42556 42603 0.49 - . Parent=g3.t1 >! chrI AUGUSTUS intron 42741 43580 0.77 - . Parent=g3.t1 >! chrI AUGUSTUS intron 43704 43756 0.78 - . Parent=g3.t1 >! chrI AUGUSTUS CDS 34533 34712 0.69 - 0 ID=g3.t1.cds;Parent=g3.t1 >! chrI AUGUSTUS CDS 35686 36011 1 - 2 ID=g3.t1.cds;Parent=g3.t1 >--- 95,99 ---- >! chrI AUGUSTUS intron 42556 42603 0.54 - . Parent=g3.t1 >! chrI AUGUSTUS intron 42741 43580 0.74 - . Parent=g3.t1 >! chrI AUGUSTUS intron 43704 43756 0.77 - . Parent=g3.t1 >! chrI AUGUSTUS CDS 34533 34712 0.76 - 0 ID=g3.t1.cds;Parent=g3.t1 >! chrI AUGUSTUS CDS 35686 36011 0.99 - 2 ID=g3.t1.cds;Parent=g3.t1 >*************** >*** 101,104 **** >! chrI AUGUSTUS CDS 41367 42555 0.49 - 2 ID=g3.t1.cds;Parent=g3.t1 >! chrI AUGUSTUS CDS 42604 42740 0.49 - 1 ID=g3.t1.cds;Parent=g3.t1 >! chrI AUGUSTUS CDS 43581 43703 0.77 - 1 ID=g3.t1.cds;Parent=g3.t1 >! chrI AUGUSTUS CDS 43757 43782 0.99 - 0 ID=g3.t1.cds;Parent=g3.t1 >--- 101,104 ---- >! chrI AUGUSTUS CDS 41367 42555 0.54 - 2 ID=g3.t1.cds;Parent=g3.t1 >! chrI AUGUSTUS CDS 42604 42740 0.54 - 1 ID=g3.t1.cds;Parent=g3.t1 >! chrI AUGUSTUS CDS 43581 43703 0.74 - 1 ID=g3.t1.cds;Parent=g3.t1 >! chrI AUGUSTUS CDS 43757 43782 1 - 0 ID=g3.t1.cds;Parent=g3.t1 >*************** >*** 106 **** >! chrI AUGUSTUS five_prime_utr 43783 43825 0.31 - . Parent=g3.t1 >--- 106 ---- >! chrI AUGUSTUS five_prime_utr 43783 43825 0.41 - . Parent=g3.t1 >*************** >*** 128,129 **** >! chrI AUGUSTUS gene 46117 50255 0.14 - . ID=g4 >! chrI AUGUSTUS transcript 46117 50255 0.14 - . ID=g4.t1;Parent=g4 >--- 128,129 ---- >! chrI AUGUSTUS gene 46117 50255 0.18 - . ID=g4 >! chrI AUGUSTUS transcript 46117 50255 0.18 - . ID=g4.t1;Parent=g4 >*************** >*** 131,132 **** >! chrI AUGUSTUS three_prime_utr 46117 46144 0.46 - . Parent=g4.t1 >! chrI AUGUSTUS three_prime_utr 46522 46852 0.53 - . Parent=g4.t1 >--- 131,132 ---- >! chrI AUGUSTUS three_prime_utr 46117 46144 0.42 - . Parent=g4.t1 >! chrI AUGUSTUS three_prime_utr 46522 46852 0.58 - . Parent=g4.t1 >*************** >*** 135 **** >! chrI AUGUSTUS CDS 49142 50179 1 - 0 ID=g4.t1.cds;Parent=g4.t1 >--- 135 ---- >! chrI AUGUSTUS CDS 49142 50179 0.98 - 0 ID=g4.t1.cds;Parent=g4.t1 >*************** >*** 137 **** >! chrI AUGUSTUS five_prime_utr 50180 50255 0.51 - . Parent=g4.t1 >--- 137 ---- >! chrI AUGUSTUS five_prime_utr 50180 50255 0.44 - . Parent=g4.t1 >*************** >*** 155,156 **** >! chrI AUGUSTUS gene 50909 59305 0.03 - . ID=g5 >! chrI AUGUSTUS transcript 50909 59305 0.03 - . ID=g5.t1;Parent=g5 >--- 155,156 ---- >! chrI AUGUSTUS gene 50909 59305 0.02 - . ID=g5 >! chrI AUGUSTUS transcript 50909 59305 0.02 - . ID=g5.t1;Parent=g5 >*************** >*** 158 **** >! chrI AUGUSTUS three_prime_utr 50909 50998 0.55 - . Parent=g5.t1 >--- 158 ---- >! chrI AUGUSTUS three_prime_utr 50909 50998 0.52 - . Parent=g5.t1 >*************** >*** 161 **** >! chrI AUGUSTUS intron 52825 53116 0.64 - . Parent=g5.t1 >--- 161 ---- >! chrI AUGUSTUS intron 52825 53116 0.67 - . Parent=g5.t1 >*************** >*** 163,164 **** >! chrI AUGUSTUS intron 53704 55230 0.91 - . Parent=g5.t1 >! chrI AUGUSTUS intron 56157 56597 0.87 - . Parent=g5.t1 >--- 163,164 ---- >! chrI AUGUSTUS intron 53704 55230 0.84 - . Parent=g5.t1 >! chrI AUGUSTUS intron 56157 56597 0.72 - . Parent=g5.t1 >*************** >*** 166,168 **** >! chrI AUGUSTUS intron 58418 58460 0.97 - . Parent=g5.t1 >! chrI AUGUSTUS CDS 50999 51019 0.9 - 0 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 51067 52824 0.67 - 0 ID=g5.t1.cds;Parent=g5.t1 >--- 166,168 ---- >! chrI AUGUSTUS intron 58418 58460 0.98 - . Parent=g5.t1 >! chrI AUGUSTUS CDS 50999 51019 0.91 - 0 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 51067 52824 0.68 - 0 ID=g5.t1.cds;Parent=g5.t1 >*************** >*** 170,174 **** >! chrI AUGUSTUS CDS 53413 53703 0.98 - 0 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 55231 56156 0.82 - 2 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 56598 56774 0.28 - 2 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 57330 58417 0.73 - 1 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 58461 59230 0.91 - 0 ID=g5.t1.cds;Parent=g5.t1 >--- 170,174 ---- >! chrI AUGUSTUS CDS 53413 53703 1 - 0 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 55231 56156 0.69 - 2 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 56598 56774 0.27 - 2 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 57330 58417 0.71 - 1 ID=g5.t1.cds;Parent=g5.t1 >! chrI AUGUSTUS CDS 58461 59230 0.9 - 0 ID=g5.t1.cds;Parent=g5.t1 >*************** >*** 176 **** >! chrI AUGUSTUS five_prime_utr 59231 59305 0.25 - . Parent=g5.t1 >--- 176 ---- >! chrI AUGUSTUS five_prime_utr 59231 59305 0.37 - . Parent=g5.t1 >*************** >*** 210,211 **** >! chrI AUGUSTUS gene 59438 60095 0.14 - . ID=g6 >! chrI AUGUSTUS transcript 59438 60095 0.14 - . ID=g6.t1;Parent=g6 >--- 210,211 ---- >! chrI AUGUSTUS gene 59438 60095 0.17 - . ID=g6 >! chrI AUGUSTUS transcript 59438 60095 0.17 - . ID=g6.t1;Parent=g6 >*************** >*** 213 **** >! chrI AUGUSTUS three_prime_utr 59438 59458 0.84 - . Parent=g6.t1 >--- 213 ---- >! chrI AUGUSTUS three_prime_utr 59438 59458 0.77 - . Parent=g6.t1 >*************** >*** 215 **** >! chrI AUGUSTUS CDS 59459 60046 0.7 - 0 ID=g6.t1.cds;Parent=g6.t1 >--- 215 ---- >! chrI AUGUSTUS CDS 59459 60046 0.71 - 0 ID=g6.t1.cds;Parent=g6.t1 >*************** >*** 217 **** >! chrI AUGUSTUS five_prime_utr 60047 60095 0.24 - . Parent=g6.t1 >--- 217 ---- >! chrI AUGUSTUS five_prime_utr 60047 60095 0.22 - . Parent=g6.t1 >*************** >*** 233,234 **** >! chrI AUGUSTUS gene 60196 60805 0.07 + . ID=g7 >! chrI AUGUSTUS transcript 60196 60805 0.07 + . ID=g7.t1;Parent=g7 >--- 233,234 ---- >! chrI AUGUSTUS gene 60196 60805 0.05 + . ID=g7 >! chrI AUGUSTUS transcript 60196 60805 0.05 + . ID=g7.t1;Parent=g7 >*************** >*** 236 **** >! chrI AUGUSTUS five_prime_utr 60196 60221 0.34 + . Parent=g7.t1 >--- 236 ---- >! chrI AUGUSTUS five_prime_utr 60196 60221 0.41 + . Parent=g7.t1 >*************** >*** 240 **** >! chrI AUGUSTUS three_prime_utr 60687 60805 0.19 + . Parent=g7.t1 >--- 240 ---- >! chrI AUGUSTUS three_prime_utr 60687 60805 0.15 + . Parent=g7.t1 >*************** >*** 255,256 **** >! chrI AUGUSTUS gene 61530 63965 0.07 - . ID=g8 >! chrI AUGUSTUS transcript 61530 63965 0.07 - . ID=g8.t1;Parent=g8 >--- 255,256 ---- >! chrI AUGUSTUS gene 61530 63965 0.05 - . ID=g8 >! chrI AUGUSTUS transcript 61530 63965 0.05 - . ID=g8.t1;Parent=g8 >*************** >*** 258 **** >! chrI AUGUSTUS three_prime_utr 61530 61737 0.42 - . Parent=g8.t1 >--- 258 ---- >! chrI AUGUSTUS three_prime_utr 61530 61737 0.35 - . Parent=g8.t1 >*************** >*** 261 **** >! chrI AUGUSTUS intron 62066 62795 1 - . Parent=g8.t1 >--- 261 ---- >! chrI AUGUSTUS intron 62066 62795 0.98 - . Parent=g8.t1 >*************** >*** 268 **** >! chrI AUGUSTUS CDS 62796 63272 1 - 1 ID=g8.t1.cds;Parent=g8.t1 >--- 268 ---- >! chrI AUGUSTUS CDS 62796 63272 0.98 - 1 ID=g8.t1.cds;Parent=g8.t1 >*************** >*** 272 **** >! chrI AUGUSTUS CDS 63825 63905 0.5 - 0 ID=g8.t1.cds;Parent=g8.t1 >--- 272 ---- >! chrI AUGUSTUS CDS 63825 63905 0.37 - 0 ID=g8.t1.cds;Parent=g8.t1 >*************** >*** 293,294 **** >! chrI AUGUSTUS gene 64206 64920 0.13 + . ID=g9 >! chrI AUGUSTUS transcript 64206 64920 0.13 + . ID=g9.t1;Parent=g9 >--- 293,294 ---- >! chrI AUGUSTUS gene 64206 64920 0.11 + . ID=g9 >! chrI AUGUSTUS transcript 64206 64920 0.11 + . ID=g9.t1;Parent=g9 >*************** >*** 296 **** >! chrI AUGUSTUS five_prime_utr 64206 64306 0.38 + . Parent=g9.t1 >--- 296 ---- >! chrI AUGUSTUS five_prime_utr 64206 64306 0.4 + . Parent=g9.t1 >*************** >*** 298,299 **** >! chrI AUGUSTUS intron 64401 64451 1 + . Parent=g9.t1 >! chrI AUGUSTUS CDS 64307 64400 1 + 0 ID=g9.t1.cds;Parent=g9.t1 >--- 298,299 ---- >! chrI AUGUSTUS intron 64401 64451 0.93 + . Parent=g9.t1 >! chrI AUGUSTUS CDS 64307 64400 0.93 + 0 ID=g9.t1.cds;Parent=g9.t1 >*************** >*** 302 **** >! chrI AUGUSTUS three_prime_utr 64562 64920 0.3 + . Parent=g9.t1 >--- 302 ---- >! chrI AUGUSTUS three_prime_utr 64562 64920 0.29 + . Parent=g9.t1 >*************** >*** 316,317 **** >! chrI AUGUSTUS gene 64976 65454 0.17 + . ID=g10 >! chrI AUGUSTUS transcript 64976 65454 0.17 + . ID=g10.t1;Parent=g10 >--- 316,317 ---- >! chrI AUGUSTUS gene 64976 65454 0.1 + . ID=g10 >! chrI AUGUSTUS transcript 64976 65454 0.1 + . ID=g10.t1;Parent=g10 >*************** >*** 319 **** >! chrI AUGUSTUS five_prime_utr 64976 65069 0.45 + . Parent=g10.t1 >--- 319 ---- >! chrI AUGUSTUS five_prime_utr 64976 65069 0.42 + . Parent=g10.t1 >*************** >*** 323 **** >! chrI AUGUSTUS CDS 65235 65381 0.85 + 0 ID=g10.t1.cds;Parent=g10.t1 >--- 323 ---- >! chrI AUGUSTUS CDS 65235 65381 0.84 + 0 ID=g10.t1.cds;Parent=g10.t1 >*************** >*** 325 **** >! chrI AUGUSTUS three_prime_utr 65382 65454 0.37 + . Parent=g10.t1 >--- 325 ---- >! chrI AUGUSTUS three_prime_utr 65382 65454 0.29 + . Parent=g10.t1 >*************** >*** 340,341 **** >! chrI AUGUSTUS gene 65726 69080 0.12 + . ID=g11 >! chrI AUGUSTUS transcript 65726 69080 0.12 + . ID=g11.t1;Parent=g11 >--- 340,341 ---- >! chrI AUGUSTUS gene 65726 69080 0.06 + . ID=g11 >! chrI AUGUSTUS transcript 65726 69080 0.06 + . ID=g11.t1;Parent=g11 >*************** >*** 343 **** >! chrI AUGUSTUS five_prime_utr 65726 65750 0.48 + . Parent=g11.t1 >--- 343 ---- >! chrI AUGUSTUS five_prime_utr 65726 65750 0.4 + . Parent=g11.t1 >*************** >*** 345,346 **** >! chrI AUGUSTUS intron 65819 66705 0.62 + . Parent=g11.t1 >! chrI AUGUSTUS intron 66777 66836 0.92 + . Parent=g11.t1 >--- 345,346 ---- >! chrI AUGUSTUS intron 65819 66705 0.55 + . Parent=g11.t1 >! chrI AUGUSTUS intron 66777 66836 0.97 + . Parent=g11.t1 >*************** >*** 348,349 **** >! chrI AUGUSTUS intron 67241 68039 0.89 + . Parent=g11.t1 >! chrI AUGUSTUS intron 68148 68246 0.45 + . Parent=g11.t1 >--- 348,349 ---- >! chrI AUGUSTUS intron 67241 68039 0.83 + . Parent=g11.t1 >! chrI AUGUSTUS intron 68148 68246 0.4 + . Parent=g11.t1 >*************** >*** 352,355 **** >! chrI AUGUSTUS intron 68830 68879 0.81 + . Parent=g11.t1 >! chrI AUGUSTUS CDS 65751 65818 0.62 + 0 ID=g11.t1.cds;Parent=g11.t1 >! chrI AUGUSTUS CDS 66706 66776 0.92 + 1 ID=g11.t1.cds;Parent=g11.t1 >! chrI AUGUSTUS CDS 66837 66973 0.91 + 2 ID=g11.t1.cds;Parent=g11.t1 >--- 352,355 ---- >! chrI AUGUSTUS intron 68830 68879 0.84 + . Parent=g11.t1 >! chrI AUGUSTUS CDS 65751 65818 0.55 + 0 ID=g11.t1.cds;Parent=g11.t1 >! chrI AUGUSTUS CDS 66706 66776 0.97 + 1 ID=g11.t1.cds;Parent=g11.t1 >! chrI AUGUSTUS CDS 66837 66973 0.96 + 2 ID=g11.t1.cds;Parent=g11.t1 >*************** >*** 357,358 **** >! chrI AUGUSTUS CDS 68040 68147 0.89 + 0 ID=g11.t1.cds;Parent=g11.t1 >! chrI AUGUSTUS CDS 68247 68312 0.51 + 0 ID=g11.t1.cds;Parent=g11.t1 >--- 357,358 ---- >! chrI AUGUSTUS CDS 68040 68147 0.83 + 0 ID=g11.t1.cds;Parent=g11.t1 >! chrI AUGUSTUS CDS 68247 68312 0.5 + 0 ID=g11.t1.cds;Parent=g11.t1 >*************** >*** 360,361 **** >! chrI AUGUSTUS CDS 68507 68829 0.96 + 0 ID=g11.t1.cds;Parent=g11.t1 >! chrI AUGUSTUS CDS 68880 69051 0.81 + 1 ID=g11.t1.cds;Parent=g11.t1 >--- 360,361 ---- >! chrI AUGUSTUS CDS 68507 68829 0.93 + 0 ID=g11.t1.cds;Parent=g11.t1 >! chrI AUGUSTUS CDS 68880 69051 0.84 + 1 ID=g11.t1.cds;Parent=g11.t1 >*************** >*** 363 **** >! chrI AUGUSTUS three_prime_utr 69052 69080 0.64 + . Parent=g11.t1 >--- 363 ---- >! chrI AUGUSTUS three_prime_utr 69052 69080 0.6 + . Parent=g11.t1 >*************** >*** 381,382 **** >! chrI AUGUSTUS gene 69091 69615 0.14 - . ID=g12 >! chrI AUGUSTUS transcript 69091 69615 0.14 - . ID=g12.t1;Parent=g12 >--- 381,382 ---- >! chrI AUGUSTUS gene 69091 69615 0.21 - . ID=g12 >! chrI AUGUSTUS transcript 69091 69615 0.21 - . ID=g12.t1;Parent=g12 >*************** >*** 384 **** >! chrI AUGUSTUS three_prime_utr 69091 69130 0.69 - . Parent=g12.t1 >--- 384 ---- >! chrI AUGUSTUS three_prime_utr 69091 69130 0.63 - . Parent=g12.t1 >*************** >*** 386 **** >! chrI AUGUSTUS intron 69296 69344 1 - . Parent=g12.t1 >--- 386 ---- >! chrI AUGUSTUS intron 69296 69344 0.99 - . Parent=g12.t1 >*************** >*** 388 **** >! chrI AUGUSTUS CDS 69345 69515 1 - 0 ID=g12.t1.cds;Parent=g12.t1 >--- 388 ---- >! chrI AUGUSTUS CDS 69345 69515 0.99 - 0 ID=g12.t1.cds;Parent=g12.t1 >*************** >*** 390 **** >! chrI AUGUSTUS five_prime_utr 69516 69615 0.19 - . Parent=g12.t1 >--- 390 ---- >! chrI AUGUSTUS five_prime_utr 69516 69615 0.29 - . Parent=g12.t1 >*************** >*** 405,406 **** >! chrI AUGUSTUS gene 69685 70725 0.2 - . ID=g13 >! chrI AUGUSTUS transcript 69685 70725 0.2 - . ID=g13.t1;Parent=g13 >--- 405,406 ---- >! chrI AUGUSTUS gene 69685 70725 0.32 - . ID=g13 >! chrI AUGUSTUS transcript 69685 70725 0.32 - . ID=g13.t1;Parent=g13 >*************** >*** 408 **** >! chrI AUGUSTUS three_prime_utr 69685 69722 0.74 - . Parent=g13.t1 >--- 408 ---- >! chrI AUGUSTUS three_prime_utr 69685 69722 0.85 - . Parent=g13.t1 >*************** >*** 410,411 **** >! chrI AUGUSTUS intron 69840 70053 0.93 - . Parent=g13.t1 >! chrI AUGUSTUS intron 70210 70441 0.97 - . Parent=g13.t1 >--- 410,411 ---- >! chrI AUGUSTUS intron 69840 70053 0.89 - . Parent=g13.t1 >! chrI AUGUSTUS intron 70210 70441 0.93 - . Parent=g13.t1 >*************** >*** 413,414 **** >! chrI AUGUSTUS CDS 70054 70209 0.93 - 0 ID=g13.t1.cds;Parent=g13.t1 >! chrI AUGUSTUS CDS 70442 70606 0.97 - 0 ID=g13.t1.cds;Parent=g13.t1 >--- 413,414 ---- >! chrI AUGUSTUS CDS 70054 70209 0.89 - 0 ID=g13.t1.cds;Parent=g13.t1 >! chrI AUGUSTUS CDS 70442 70606 0.93 - 0 ID=g13.t1.cds;Parent=g13.t1 >*************** >*** 416 **** >! chrI AUGUSTUS five_prime_utr 70607 70725 0.26 - . Parent=g13.t1 >--- 416 ---- >! chrI AUGUSTUS five_prime_utr 70607 70725 0.35 - . Parent=g13.t1 >*************** >*** 431,432 **** >! chrI AUGUSTUS gene 71286 72550 0.33 + . ID=g14 >! chrI AUGUSTUS transcript 71286 72550 0.33 + . ID=g14.t1;Parent=g14 >--- 431,432 ---- >! chrI AUGUSTUS gene 71286 72550 0.35 + . ID=g14 >! chrI AUGUSTUS transcript 71286 72550 0.35 + . ID=g14.t1;Parent=g14 >*************** >*** 434 **** >! chrI AUGUSTUS five_prime_utr 71286 71354 0.45 + . Parent=g14.t1 >--- 434 ---- >! chrI AUGUSTUS five_prime_utr 71286 71354 0.49 + . Parent=g14.t1 >*************** >*** 442 **** >! chrI AUGUSTUS three_prime_utr 72301 72550 0.74 + . Parent=g14.t1 >--- 442 ---- >! chrI AUGUSTUS three_prime_utr 72301 72550 0.71 + . Parent=g14.t1 >*************** >*** 463 **** >! chrI AUGUSTUS five_prime_utr 72656 72681 0.57 + . Parent=g15.t1 >--- 463 ---- >! chrI AUGUSTUS five_prime_utr 72656 72681 0.59 + . Parent=g15.t1 >*************** >*** 465 **** >! chrI AUGUSTUS intron 72809 73420 1 + . Parent=g15.t1 >--- 465 ---- >! chrI AUGUSTUS intron 72809 73420 0.99 + . Parent=g15.t1 >*************** >*** 468 **** >! chrI AUGUSTUS CDS 72682 72808 0.84 + 0 ID=g15.t1.cds;Parent=g15.t1 >--- 468 ---- >! chrI AUGUSTUS CDS 72682 72808 0.85 + 0 ID=g15.t1.cds;Parent=g15.t1 >*************** >*** 473 **** >! chrI AUGUSTUS three_prime_utr 76103 76290 0.3 + . Parent=g15.t1 >--- 473 ---- >! chrI AUGUSTUS three_prime_utr 76103 76290 0.24 + . Parent=g15.t1 >*************** >*** 492,493 **** >! chrI AUGUSTUS gene 76886 85550 0.05 + . ID=g16 >! chrI AUGUSTUS transcript 76886 85550 0.05 + . ID=g16.t1;Parent=g16 >--- 492,493 ---- >! chrI AUGUSTUS gene 76886 85550 0.03 + . ID=g16 >! chrI AUGUSTUS transcript 76886 85550 0.03 + . ID=g16.t1;Parent=g16 >*************** >*** 495,496 **** >! chrI AUGUSTUS five_prime_utr 76886 76916 0.12 + . Parent=g16.t1 >! chrI AUGUSTUS five_prime_utr 78963 78988 0.68 + . Parent=g16.t1 >--- 495,496 ---- >! chrI AUGUSTUS five_prime_utr 76886 76916 0.08 + . Parent=g16.t1 >! chrI AUGUSTUS five_prime_utr 78963 78988 0.61 + . Parent=g16.t1 >*************** >*** 498,499 **** >! chrI AUGUSTUS intron 79057 79265 0.36 + . Parent=g16.t1 >! chrI AUGUSTUS intron 79360 80745 0.76 + . Parent=g16.t1 >--- 498,499 ---- >! chrI AUGUSTUS intron 79057 79265 0.33 + . Parent=g16.t1 >! chrI AUGUSTUS intron 79360 80745 0.7 + . Parent=g16.t1 >*************** >*** 501,507 **** >! chrI AUGUSTUS intron 81312 82815 0.77 + . Parent=g16.t1 >! chrI AUGUSTUS intron 83032 84340 0.97 + . Parent=g16.t1 >! chrI AUGUSTUS intron 84419 84480 0.99 + . Parent=g16.t1 >! chrI AUGUSTUS intron 84553 85252 0.93 + . Parent=g16.t1 >! chrI AUGUSTUS CDS 78989 79056 0.36 + 0 ID=g16.t1.cds;Parent=g16.t1 >! chrI AUGUSTUS CDS 79266 79359 0.76 + 1 ID=g16.t1.cds;Parent=g16.t1 >! chrI AUGUSTUS CDS 80746 80902 0.74 + 0 ID=g16.t1.cds;Parent=g16.t1 >--- 501,507 ---- >! chrI AUGUSTUS intron 81312 82815 0.74 + . Parent=g16.t1 >! chrI AUGUSTUS intron 83032 84340 0.98 + . Parent=g16.t1 >! chrI AUGUSTUS intron 84419 84480 1 + . Parent=g16.t1 >! chrI AUGUSTUS intron 84553 85252 0.91 + . Parent=g16.t1 >! chrI AUGUSTUS CDS 78989 79056 0.33 + 0 ID=g16.t1.cds;Parent=g16.t1 >! chrI AUGUSTUS CDS 79266 79359 0.7 + 1 ID=g16.t1.cds;Parent=g16.t1 >! chrI AUGUSTUS CDS 80746 80902 0.69 + 0 ID=g16.t1.cds;Parent=g16.t1 >*************** >*** 509 **** >! chrI AUGUSTUS CDS 82816 83031 0.97 + 0 ID=g16.t1.cds;Parent=g16.t1 >--- 509 ---- >! chrI AUGUSTUS CDS 82816 83031 0.98 + 0 ID=g16.t1.cds;Parent=g16.t1 >*************** >*** 511 **** >! chrI AUGUSTUS CDS 84481 84552 0.93 + 0 ID=g16.t1.cds;Parent=g16.t1 >--- 511 ---- >! chrI AUGUSTUS CDS 84481 84552 0.91 + 0 ID=g16.t1.cds;Parent=g16.t1 >*************** >*** 514 **** >! chrI AUGUSTUS three_prime_utr 85493 85550 0.74 + . Parent=g16.t1 >--- 514 ---- >! chrI AUGUSTUS three_prime_utr 85493 85550 0.69 + . Parent=g16.t1 >*************** >*** 537 **** >! chrI AUGUSTUS three_prime_utr 85608 85674 0.53 - . Parent=g17.t1 >--- 537 ---- >! chrI AUGUSTUS three_prime_utr 85608 85674 0.55 - . Parent=g17.t1 >*************** >*** 539,541 **** >! chrI AUGUSTUS intron 85818 86937 0.58 - . Parent=g17.t1 >! chrI AUGUSTUS intron 87410 87741 0.86 - . Parent=g17.t1 >! chrI AUGUSTUS intron 87886 88145 1 - . Parent=g17.t1 >--- 539,541 ---- >! chrI AUGUSTUS intron 85818 86937 0.62 - . Parent=g17.t1 >! chrI AUGUSTUS intron 87410 87741 0.74 - . Parent=g17.t1 >! chrI AUGUSTUS intron 87886 88145 0.98 - . Parent=g17.t1 >*************** >*** 544,548 **** >! chrI AUGUSTUS intron 90594 92212 1 - . Parent=g17.t1 >! chrI AUGUSTUS intron 92503 93696 0.81 - . Parent=g17.t1 >! chrI AUGUSTUS CDS 85675 85817 0.58 - 2 ID=g17.t1.cds;Parent=g17.t1 >! chrI AUGUSTUS CDS 86938 87409 0.51 - 0 ID=g17.t1.cds;Parent=g17.t1 >! chrI AUGUSTUS CDS 87742 87885 1 - 0 ID=g17.t1.cds;Parent=g17.t1 >--- 544,548 ---- >! chrI AUGUSTUS intron 90594 92212 0.99 - . Parent=g17.t1 >! chrI AUGUSTUS intron 92503 93696 0.73 - . Parent=g17.t1 >! chrI AUGUSTUS CDS 85675 85817 0.62 - 2 ID=g17.t1.cds;Parent=g17.t1 >! chrI AUGUSTUS CDS 86938 87409 0.48 - 0 ID=g17.t1.cds;Parent=g17.t1 >! chrI AUGUSTUS CDS 87742 87885 0.98 - 0 ID=g17.t1.cds;Parent=g17.t1 >*************** >*** 553 **** >! chrI AUGUSTUS CDS 93697 93798 0.81 - 0 ID=g17.t1.cds;Parent=g17.t1 >--- 553 ---- >! chrI AUGUSTUS CDS 93697 93798 0.71 - 0 ID=g17.t1.cds;Parent=g17.t1 >*************** >*** 555 **** >! chrI AUGUSTUS five_prime_utr 93799 93865 0.36 - . Parent=g17.t1 >--- 555 ---- >! chrI AUGUSTUS five_prime_utr 93799 93865 0.38 - . Parent=g17.t1 >*************** >*** 575,576 **** >! chrI AUGUSTUS gene 97316 105470 0.32 + . ID=g18 >! chrI AUGUSTUS transcript 97316 105470 0.32 + . ID=g18.t1;Parent=g18 >--- 575,576 ---- >! chrI AUGUSTUS gene 97316 105470 0.3 + . ID=g18 >! chrI AUGUSTUS transcript 97316 105470 0.3 + . ID=g18.t1;Parent=g18 >*************** >*** 578 **** >! chrI AUGUSTUS five_prime_utr 97316 97348 0.47 + . Parent=g18.t1 >--- 578 ---- >! chrI AUGUSTUS five_prime_utr 97316 97348 0.43 + . Parent=g18.t1 >*************** >*** 583,585 **** >! chrI AUGUSTUS intron 101007 102144 0.98 + . Parent=g18.t1 >! chrI AUGUSTUS intron 102569 103199 0.85 + . Parent=g18.t1 >! chrI AUGUSTUS intron 103292 103939 0.96 + . Parent=g18.t1 >--- 583,585 ---- >! chrI AUGUSTUS intron 101007 102144 0.95 + . Parent=g18.t1 >! chrI AUGUSTUS intron 102569 103199 0.89 + . Parent=g18.t1 >! chrI AUGUSTUS intron 103292 103939 0.97 + . Parent=g18.t1 >*************** >*** 587 **** >! chrI AUGUSTUS CDS 97349 97447 1 + 0 ID=g18.t1.cds;Parent=g18.t1 >--- 587 ---- >! chrI AUGUSTUS CDS 97349 97447 0.98 + 0 ID=g18.t1.cds;Parent=g18.t1 >*************** >*** 590,592 **** >! chrI AUGUSTUS CDS 100626 101006 0.97 + 0 ID=g18.t1.cds;Parent=g18.t1 >! chrI AUGUSTUS CDS 102145 102568 0.85 + 0 ID=g18.t1.cds;Parent=g18.t1 >! chrI AUGUSTUS CDS 103200 103291 0.96 + 2 ID=g18.t1.cds;Parent=g18.t1 >--- 590,592 ---- >! chrI AUGUSTUS CDS 100626 101006 0.95 + 0 ID=g18.t1.cds;Parent=g18.t1 >! chrI AUGUSTUS CDS 102145 102568 0.89 + 0 ID=g18.t1.cds;Parent=g18.t1 >! chrI AUGUSTUS CDS 103200 103291 0.97 + 2 ID=g18.t1.cds;Parent=g18.t1 >*************** >*** 594 **** >! chrI AUGUSTUS CDS 105186 105448 0.91 + 2 ID=g18.t1.cds;Parent=g18.t1 >--- 594 ---- >! chrI AUGUSTUS CDS 105186 105448 0.9 + 2 ID=g18.t1.cds;Parent=g18.t1 >*************** >*** 617,618 **** >! chrI AUGUSTUS gene 107407 108865 0.5 - . ID=g19 >! chrI AUGUSTUS transcript 107407 108865 0.5 - . ID=g19.t1;Parent=g19 >--- 617,618 ---- >! chrI AUGUSTUS gene 107407 108865 0.46 - . ID=g19 >! chrI AUGUSTUS transcript 107407 108865 0.46 - . ID=g19.t1;Parent=g19 >*************** >*** 620 **** >! chrI AUGUSTUS three_prime_utr 107407 107458 1 - . Parent=g19.t1 >--- 620 ---- >! chrI AUGUSTUS three_prime_utr 107407 107458 0.99 - . Parent=g19.t1 >*************** >*** 623 **** >! chrI AUGUSTUS intron 108640 108775 0.9 - . Parent=g19.t1 >--- 623 ---- >! chrI AUGUSTUS intron 108640 108775 0.91 - . Parent=g19.t1 >*************** >*** 626 **** >! chrI AUGUSTUS CDS 108776 108830 0.9 - 0 ID=g19.t1.cds;Parent=g19.t1 >--- 626 ---- >! chrI AUGUSTUS CDS 108776 108830 0.91 - 0 ID=g19.t1.cds;Parent=g19.t1 >*************** >*** 628 **** >! chrI AUGUSTUS five_prime_utr 108831 108865 0.52 - . Parent=g19.t1 >--- 628 ---- >! chrI AUGUSTUS five_prime_utr 108831 108865 0.46 - . Parent=g19.t1 >*************** >*** 645,646 **** >! chrI AUGUSTUS gene 109176 113257 0.33 + . ID=g20 >! chrI AUGUSTUS transcript 109176 113257 0.33 + . ID=g20.t1;Parent=g20 >--- 645,646 ---- >! chrI AUGUSTUS gene 109176 113257 0.48 + . ID=g20 >! chrI AUGUSTUS transcript 109176 113257 0.48 + . ID=g20.t1;Parent=g20 >*************** >*** 648 **** >! chrI AUGUSTUS five_prime_utr 109176 109203 0.6 + . Parent=g20.t1 >--- 648 ---- >! chrI AUGUSTUS five_prime_utr 109176 109203 0.69 + . Parent=g20.t1 >*************** >*** 650,656 **** >! chrI AUGUSTUS intron 109233 110133 0.99 + . Parent=g20.t1 >! chrI AUGUSTUS intron 110452 111386 0.99 + . Parent=g20.t1 >! chrI AUGUSTUS intron 111619 113228 0.61 + . Parent=g20.t1 >! chrI AUGUSTUS CDS 109204 109232 0.99 + 0 ID=g20.t1.cds;Parent=g20.t1 >! chrI AUGUSTUS CDS 110134 110451 0.99 + 1 ID=g20.t1.cds;Parent=g20.t1 >! chrI AUGUSTUS CDS 111387 111618 0.72 + 1 ID=g20.t1.cds;Parent=g20.t1 >! chrI AUGUSTUS CDS 113229 113231 0.61 + 0 ID=g20.t1.cds;Parent=g20.t1 >--- 650,656 ---- >! chrI AUGUSTUS intron 109233 110133 0.98 + . Parent=g20.t1 >! chrI AUGUSTUS intron 110452 111386 1 + . Parent=g20.t1 >! chrI AUGUSTUS intron 111619 113228 0.64 + . Parent=g20.t1 >! chrI AUGUSTUS CDS 109204 109232 0.98 + 0 ID=g20.t1.cds;Parent=g20.t1 >! chrI AUGUSTUS CDS 110134 110451 1 + 1 ID=g20.t1.cds;Parent=g20.t1 >! chrI AUGUSTUS CDS 111387 111618 0.74 + 1 ID=g20.t1.cds;Parent=g20.t1 >! chrI AUGUSTUS CDS 113229 113231 0.64 + 0 ID=g20.t1.cds;Parent=g20.t1 >*************** >*** 658 **** >! chrI AUGUSTUS three_prime_utr 113232 113257 0.59 + . Parent=g20.t1 >--- 658 ---- >! chrI AUGUSTUS three_prime_utr 113232 113257 0.64 + . Parent=g20.t1 >*************** >*** 676,677 **** >! chrI AUGUSTUS gene 113607 118555 0.08 - . ID=g21 >! chrI AUGUSTUS transcript 113607 118555 0.08 - . ID=g21.t1;Parent=g21 >--- 676,677 ---- >! chrI AUGUSTUS gene 113607 118555 0.16 - . ID=g21 >! chrI AUGUSTUS transcript 113607 118555 0.16 - . ID=g21.t1;Parent=g21 >*************** >*** 679 **** >! chrI AUGUSTUS three_prime_utr 113607 113785 0.46 - . Parent=g21.t1 >--- 679 ---- >! chrI AUGUSTUS three_prime_utr 113607 113785 0.43 - . Parent=g21.t1 >*************** >*** 684 **** >! chrI AUGUSTUS intron 116583 116742 0.66 - . Parent=g21.t1 >--- 684 ---- >! chrI AUGUSTUS intron 116583 116742 0.71 - . Parent=g21.t1 >*************** >*** 686 **** >! chrI AUGUSTUS intron 117071 117122 0.91 - . Parent=g21.t1 >--- 686 ---- >! chrI AUGUSTUS intron 117071 117122 0.92 - . Parent=g21.t1 >*************** >*** 693,694 **** >! chrI AUGUSTUS CDS 116743 116861 0.67 - 1 ID=g21.t1.cds;Parent=g21.t1 >! chrI AUGUSTUS CDS 116983 117070 0.91 - 2 ID=g21.t1.cds;Parent=g21.t1 >--- 693,694 ---- >! chrI AUGUSTUS CDS 116743 116861 0.73 - 1 ID=g21.t1.cds;Parent=g21.t1 >! chrI AUGUSTUS CDS 116983 117070 0.92 - 2 ID=g21.t1.cds;Parent=g21.t1 >*************** >*** 699 **** >! chrI AUGUSTUS five_prime_utr 118521 118555 0.46 - . Parent=g21.t1 >--- 699 ---- >! chrI AUGUSTUS five_prime_utr 118521 118555 0.53 - . Parent=g21.t1 >*************** >*** 719,720 **** >! chrI AUGUSTUS gene 128546 145973 0.28 + . ID=g22 >! chrI AUGUSTUS transcript 128546 145973 0.28 + . ID=g22.t1;Parent=g22 >--- 719,720 ---- >! chrI AUGUSTUS gene 128546 145973 0.26 + . ID=g22 >! chrI AUGUSTUS transcript 128546 145973 0.26 + . ID=g22.t1;Parent=g22 >*************** >*** 722 **** >! chrI AUGUSTUS five_prime_utr 128546 128591 0.47 + . Parent=g22.t1 >--- 722 ---- >! chrI AUGUSTUS five_prime_utr 128546 128591 0.37 + . Parent=g22.t1 >*************** >*** 724,726 **** >! chrI AUGUSTUS intron 128776 134788 0.5 + . Parent=g22.t1 >! chrI AUGUSTUS intron 134923 135049 1 + . Parent=g22.t1 >! chrI AUGUSTUS intron 135146 136532 1 + . Parent=g22.t1 >--- 724,726 ---- >! chrI AUGUSTUS intron 128776 134788 0.44 + . Parent=g22.t1 >! chrI AUGUSTUS intron 134923 135049 0.99 + . Parent=g22.t1 >! chrI AUGUSTUS intron 135146 136532 0.99 + . Parent=g22.t1 >*************** >*** 730 **** >! chrI AUGUSTUS intron 143093 144879 0.87 + . Parent=g22.t1 >--- 730 ---- >! chrI AUGUSTUS intron 143093 144879 0.84 + . Parent=g22.t1 >*************** >*** 732,733 **** >! chrI AUGUSTUS intron 145137 145688 0.99 + . Parent=g22.t1 >! chrI AUGUSTUS CDS 128592 128775 0.53 + 0 ID=g22.t1.cds;Parent=g22.t1 >--- 732,733 ---- >! chrI AUGUSTUS intron 145137 145688 1 + . Parent=g22.t1 >! chrI AUGUSTUS CDS 128592 128775 0.45 + 0 ID=g22.t1.cds;Parent=g22.t1 >*************** >*** 735 **** >! chrI AUGUSTUS CDS 135050 135145 1 + 0 ID=g22.t1.cds;Parent=g22.t1 >--- 735 ---- >! chrI AUGUSTUS CDS 135050 135145 0.99 + 0 ID=g22.t1.cds;Parent=g22.t1 >*************** >*** 741 **** >! chrI AUGUSTUS CDS 145041 145136 0.99 + 0 ID=g22.t1.cds;Parent=g22.t1 >--- 741 ---- >! chrI AUGUSTUS CDS 145041 145136 1 + 0 ID=g22.t1.cds;Parent=g22.t1 >*************** >*** 744 **** >! chrI AUGUSTUS three_prime_utr 145764 145973 0.69 + . Parent=g22.t1 >--- 744 ---- >! chrI AUGUSTUS three_prime_utr 145764 145973 0.76 + . Parent=g22.t1 >*************** >*** 767,768 **** >! chrI AUGUSTUS gene 149016 149456 0.12 + . ID=g23 >! chrI AUGUSTUS transcript 149016 149456 0.12 + . ID=g23.t1;Parent=g23 >--- 767,768 ---- >! chrI AUGUSTUS gene 149016 149456 0.11 + . ID=g23 >! chrI AUGUSTUS transcript 149016 149456 0.11 + . ID=g23.t1;Parent=g23 >*************** >*** 770 **** >! chrI AUGUSTUS five_prime_utr 149016 149045 0.31 + . Parent=g23.t1 >--- 770 ---- >! chrI AUGUSTUS five_prime_utr 149016 149045 0.24 + . Parent=g23.t1 >*************** >*** 773,774 **** >! chrI AUGUSTUS CDS 149046 149254 0.76 + 0 ID=g23.t1.cds;Parent=g23.t1 >! chrI AUGUSTUS CDS 149306 149396 0.97 + 1 ID=g23.t1.cds;Parent=g23.t1 >--- 773,774 ---- >! chrI AUGUSTUS CDS 149046 149254 0.65 + 0 ID=g23.t1.cds;Parent=g23.t1 >! chrI AUGUSTUS CDS 149306 149396 0.96 + 1 ID=g23.t1.cds;Parent=g23.t1 >*************** >*** 776 **** >! chrI AUGUSTUS three_prime_utr 149397 149456 0.36 + . Parent=g23.t1 >--- 776 ---- >! chrI AUGUSTUS three_prime_utr 149397 149456 0.44 + . Parent=g23.t1 >*************** >*** 791,792 **** >! chrI AUGUSTUS gene 149852 151305 0.1 - . ID=g24 >! chrI AUGUSTUS transcript 149852 151305 0.1 - . ID=g24.t1;Parent=g24 >--- 791,792 ---- >! chrI AUGUSTUS gene 149852 151305 0.12 - . ID=g24 >! chrI AUGUSTUS transcript 149852 151305 0.12 - . ID=g24.t1;Parent=g24 >*************** >*** 794 **** >! chrI AUGUSTUS three_prime_utr 149852 149905 0.44 - . Parent=g24.t1 >--- 794 ---- >! chrI AUGUSTUS three_prime_utr 149852 149905 0.35 - . Parent=g24.t1 >*************** >*** 796,800 **** >! chrI AUGUSTUS intron 150072 150693 0.8 - . Parent=g24.t1 >! chrI AUGUSTUS intron 150978 151235 0.6 - . Parent=g24.t1 >! chrI AUGUSTUS CDS 149906 150071 0.8 - 1 ID=g24.t1.cds;Parent=g24.t1 >! chrI AUGUSTUS CDS 150694 150977 0.66 - 0 ID=g24.t1.cds;Parent=g24.t1 >! chrI AUGUSTUS CDS 151236 151238 0.6 - 0 ID=g24.t1.cds;Parent=g24.t1 >--- 796,800 ---- >! chrI AUGUSTUS intron 150072 150693 0.81 - . Parent=g24.t1 >! chrI AUGUSTUS intron 150978 151235 0.59 - . Parent=g24.t1 >! chrI AUGUSTUS CDS 149906 150071 0.81 - 1 ID=g24.t1.cds;Parent=g24.t1 >! chrI AUGUSTUS CDS 150694 150977 0.69 - 0 ID=g24.t1.cds;Parent=g24.t1 >! chrI AUGUSTUS CDS 151236 151238 0.59 - 0 ID=g24.t1.cds;Parent=g24.t1 >*************** >*** 802 **** >! chrI AUGUSTUS five_prime_utr 151239 151305 0.17 - . Parent=g24.t1 >--- 802 ---- >! chrI AUGUSTUS five_prime_utr 151239 151305 0.28 - . Parent=g24.t1 >*************** >*** 819,820 **** >! chrI AUGUSTUS gene 152796 156161 0.06 + . ID=g25 >! chrI AUGUSTUS transcript 152796 156161 0.06 + . ID=g25.t1;Parent=g25 >--- 819,820 ---- >! chrI AUGUSTUS gene 152796 156161 0.07 + . ID=g25 >! chrI AUGUSTUS transcript 152796 156161 0.07 + . ID=g25.t1;Parent=g25 >*************** >*** 822 **** >! chrI AUGUSTUS five_prime_utr 152796 152986 0.21 + . Parent=g25.t1 >--- 822 ---- >! chrI AUGUSTUS five_prime_utr 152796 152986 0.25 + . Parent=g25.t1 >*************** >*** 827 **** >! chrI AUGUSTUS three_prime_utr 155685 156161 0.27 + . Parent=g25.t1 >--- 827 ---- >! chrI AUGUSTUS three_prime_utr 155685 156161 0.25 + . Parent=g25.t1 >*************** >*** 843,844 **** >! chrI AUGUSTUS gene 160036 166396 0.23 + . ID=g26 >! chrI AUGUSTUS transcript 160036 166396 0.23 + . ID=g26.t1;Parent=g26 >--- 843,844 ---- >! chrI AUGUSTUS gene 160036 166396 0.33 + . ID=g26 >! chrI AUGUSTUS transcript 160036 166396 0.33 + . ID=g26.t1;Parent=g26 >*************** >*** 846 **** >! chrI AUGUSTUS five_prime_utr 160036 160066 0.37 + . Parent=g26.t1 >--- 846 ---- >! chrI AUGUSTUS five_prime_utr 160036 160066 0.42 + . Parent=g26.t1 >*************** >*** 849,850 **** >! chrI AUGUSTUS intron 163292 164019 0.95 + . Parent=g26.t1 >! chrI AUGUSTUS intron 164105 164827 0.89 + . Parent=g26.t1 >--- 849,850 ---- >! chrI AUGUSTUS intron 163292 164019 0.98 + . Parent=g26.t1 >! chrI AUGUSTUS intron 164105 164827 0.94 + . Parent=g26.t1 >*************** >*** 853 **** >! chrI AUGUSTUS CDS 160067 160201 0.91 + 0 ID=g26.t1.cds;Parent=g26.t1 >--- 853 ---- >! chrI AUGUSTUS CDS 160067 160201 0.86 + 0 ID=g26.t1.cds;Parent=g26.t1 >*************** >*** 855,856 **** >! chrI AUGUSTUS CDS 164020 164104 0.95 + 0 ID=g26.t1.cds;Parent=g26.t1 >! chrI AUGUSTUS CDS 164828 164986 0.9 + 2 ID=g26.t1.cds;Parent=g26.t1 >--- 855,856 ---- >! chrI AUGUSTUS CDS 164020 164104 0.98 + 0 ID=g26.t1.cds;Parent=g26.t1 >! chrI AUGUSTUS CDS 164828 164986 0.95 + 2 ID=g26.t1.cds;Parent=g26.t1 >*************** >*** 860 **** >! chrI AUGUSTUS three_prime_utr 166344 166396 0.8 + . Parent=g26.t1 >--- 860 ---- >! chrI AUGUSTUS three_prime_utr 166344 166396 0.81 + . Parent=g26.t1 >*************** >*** 877,878 **** >! chrI AUGUSTUS gene 168006 176120 0.02 + . ID=g27 >! chrI AUGUSTUS transcript 168006 176120 0.02 + . ID=g27.t1;Parent=g27 >--- 877,878 ---- >! chrI AUGUSTUS gene 168006 176120 0.05 + . ID=g27 >! chrI AUGUSTUS transcript 168006 176120 0.05 + . ID=g27.t1;Parent=g27 >*************** >*** 880 **** >! chrI AUGUSTUS five_prime_utr 168006 168112 0.23 + . Parent=g27.t1 >--- 880 ---- >! chrI AUGUSTUS five_prime_utr 168006 168112 0.33 + . Parent=g27.t1 >*************** >*** 882 **** >! chrI AUGUSTUS intron 168434 172004 0.73 + . Parent=g27.t1 >--- 882 ---- >! chrI AUGUSTUS intron 168434 172004 0.78 + . Parent=g27.t1 >*************** >*** 885,888 **** >! chrI AUGUSTUS intron 174024 174889 0.83 + . Parent=g27.t1 >! chrI AUGUSTUS intron 174986 175961 0.3 + . Parent=g27.t1 >! chrI AUGUSTUS CDS 168113 168433 0.78 + 0 ID=g27.t1.cds;Parent=g27.t1 >! chrI AUGUSTUS CDS 172005 172171 0.73 + 0 ID=g27.t1.cds;Parent=g27.t1 >--- 885,888 ---- >! chrI AUGUSTUS intron 174024 174889 0.81 + . Parent=g27.t1 >! chrI AUGUSTUS intron 174986 175961 0.36 + . Parent=g27.t1 >! chrI AUGUSTUS CDS 168113 168433 0.83 + 0 ID=g27.t1.cds;Parent=g27.t1 >! chrI AUGUSTUS CDS 172005 172171 0.78 + 0 ID=g27.t1.cds;Parent=g27.t1 >*************** >*** 890,892 **** >! chrI AUGUSTUS CDS 173926 174023 0.83 + 2 ID=g27.t1.cds;Parent=g27.t1 >! chrI AUGUSTUS CDS 174890 174985 0.67 + 0 ID=g27.t1.cds;Parent=g27.t1 >! chrI AUGUSTUS CDS 175962 175964 0.3 + 0 ID=g27.t1.cds;Parent=g27.t1 >--- 890,892 ---- >! chrI AUGUSTUS CDS 173926 174023 0.81 + 2 ID=g27.t1.cds;Parent=g27.t1 >! chrI AUGUSTUS CDS 174890 174985 0.74 + 0 ID=g27.t1.cds;Parent=g27.t1 >! chrI AUGUSTUS CDS 175962 175964 0.36 + 0 ID=g27.t1.cds;Parent=g27.t1 >*************** >*** 894 **** >! chrI AUGUSTUS three_prime_utr 175965 176120 0.11 + . Parent=g27.t1 >--- 894 ---- >! chrI AUGUSTUS three_prime_utr 175965 176120 0.16 + . Parent=g27.t1 >*************** >*** 911,912 **** >! chrI AUGUSTUS gene 177676 180252 0.44 + . ID=g28 >! chrI AUGUSTUS transcript 177676 180252 0.44 + . ID=g28.t1;Parent=g28 >--- 911,912 ---- >! chrI AUGUSTUS gene 177676 180252 0.36 + . ID=g28 >! chrI AUGUSTUS transcript 177676 180252 0.36 + . ID=g28.t1;Parent=g28 >*************** >*** 914,915 **** >! chrI AUGUSTUS five_prime_utr 177676 177708 0.75 + . Parent=g28.t1 >! chrI AUGUSTUS five_prime_utr 179455 179481 0.79 + . Parent=g28.t1 >--- 914,915 ---- >! chrI AUGUSTUS five_prime_utr 177676 177708 0.73 + . Parent=g28.t1 >! chrI AUGUSTUS five_prime_utr 179455 179481 0.86 + . Parent=g28.t1 >*************** >*** 919 **** >! chrI AUGUSTUS three_prime_utr 179884 180252 0.73 + . Parent=g28.t1 >--- 919 ---- >! chrI AUGUSTUS three_prime_utr 179884 180252 0.61 + . Parent=g28.t1 >*************** >*** 936,937 **** >! chrI AUGUSTUS gene 185697 186101 0.22 + . ID=g29 >! chrI AUGUSTUS transcript 185697 186101 0.22 + . ID=g29.t1;Parent=g29 >--- 936,937 ---- >! chrI AUGUSTUS gene 185697 186101 0.19 + . ID=g29 >! chrI AUGUSTUS transcript 185697 186101 0.19 + . ID=g29.t1;Parent=g29 >*************** >*** 939 **** >! chrI AUGUSTUS five_prime_utr 185697 185757 0.9 + . Parent=g29.t1 >--- 939 ---- >! chrI AUGUSTUS five_prime_utr 185697 185757 0.96 + . Parent=g29.t1 >*************** >*** 941,943 **** >! chrI AUGUSTUS intron 185920 185985 0.6 + . Parent=g29.t1 >! chrI AUGUSTUS CDS 185758 185919 0.99 + 0 ID=g29.t1.cds;Parent=g29.t1 >! chrI AUGUSTUS CDS 185986 186030 0.6 + 0 ID=g29.t1.cds;Parent=g29.t1 >--- 941,943 ---- >! chrI AUGUSTUS intron 185920 185985 0.64 + . Parent=g29.t1 >! chrI AUGUSTUS CDS 185758 185919 1 + 0 ID=g29.t1.cds;Parent=g29.t1 >! chrI AUGUSTUS CDS 185986 186030 0.64 + 0 ID=g29.t1.cds;Parent=g29.t1 >*************** >*** 945 **** >! chrI AUGUSTUS three_prime_utr 186031 186101 0.24 + . Parent=g29.t1 >--- 945 ---- >! chrI AUGUSTUS three_prime_utr 186031 186101 0.2 + . Parent=g29.t1 >*************** >*** 959,960 **** >! chrI AUGUSTUS gene 192317 209633 0.05 + . ID=g30 >! chrI AUGUSTUS transcript 192317 209633 0.05 + . ID=g30.t1;Parent=g30 >--- 959,960 ---- >! chrI AUGUSTUS gene 192317 209633 0.11 + . ID=g30 >! chrI AUGUSTUS transcript 192317 209633 0.11 + . ID=g30.t1;Parent=g30 >*************** >*** 962 **** >! chrI AUGUSTUS five_prime_utr 192317 192428 0.41 + . Parent=g30.t1 >--- 962 ---- >! chrI AUGUSTUS five_prime_utr 192317 192428 0.43 + . Parent=g30.t1 >*************** >*** 964 **** >! chrI AUGUSTUS intron 192749 192844 0.93 + . Parent=g30.t1 >--- 964 ---- >! chrI AUGUSTUS intron 192749 192844 0.85 + . Parent=g30.t1 >*************** >*** 966,973 **** >! chrI AUGUSTUS intron 196617 197189 0.54 + . Parent=g30.t1 >! chrI AUGUSTUS intron 197286 200010 0.99 + . Parent=g30.t1 >! chrI AUGUSTUS intron 200151 201730 0.97 + . Parent=g30.t1 >! chrI AUGUSTUS intron 202170 203574 0.99 + . Parent=g30.t1 >! chrI AUGUSTUS intron 203866 204925 1 + . Parent=g30.t1 >! chrI AUGUSTUS intron 205310 207320 0.99 + . Parent=g30.t1 >! chrI AUGUSTUS intron 207840 209094 1 + . Parent=g30.t1 >! chrI AUGUSTUS CDS 192429 192748 0.93 + 0 ID=g30.t1.cds;Parent=g30.t1 >--- 966,973 ---- >! chrI AUGUSTUS intron 196617 197189 0.61 + . Parent=g30.t1 >! chrI AUGUSTUS intron 197286 200010 1 + . Parent=g30.t1 >! chrI AUGUSTUS intron 200151 201730 0.98 + . Parent=g30.t1 >! chrI AUGUSTUS intron 202170 203574 1 + . Parent=g30.t1 >! chrI AUGUSTUS intron 203866 204925 0.98 + . Parent=g30.t1 >! chrI AUGUSTUS intron 205310 207320 1 + . Parent=g30.t1 >! chrI AUGUSTUS intron 207840 209094 0.98 + . Parent=g30.t1 >! chrI AUGUSTUS CDS 192429 192748 0.85 + 0 ID=g30.t1.cds;Parent=g30.t1 >*************** >*** 975,980 **** >! chrI AUGUSTUS CDS 195400 196616 0.54 + 2 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 197190 197285 0.99 + 0 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 200011 200150 0.97 + 0 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 201731 202169 0.99 + 1 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 203575 203865 0.99 + 0 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 204926 205309 1 + 0 ID=g30.t1.cds;Parent=g30.t1 >--- 975,980 ---- >! chrI AUGUSTUS CDS 195400 196616 0.61 + 2 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 197190 197285 1 + 0 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 200011 200150 0.98 + 0 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 201731 202169 1 + 1 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 203575 203865 1 + 0 ID=g30.t1.cds;Parent=g30.t1 >! chrI AUGUSTUS CDS 204926 205309 0.98 + 0 ID=g30.t1.cds;Parent=g30.t1 >*************** >*** 984 **** >! chrI AUGUSTUS three_prime_utr 209335 209633 0.29 + . Parent=g30.t1 >--- 984 ---- >! chrI AUGUSTUS three_prime_utr 209335 209633 0.41 + . Parent=g30.t1 >*************** >*** 1012,1013 **** >! chrI AUGUSTUS gene 216127 219441 0.09 + . ID=g31 >! chrI AUGUSTUS transcript 216127 219441 0.09 + . ID=g31.t1;Parent=g31 >--- 1012,1013 ---- >! chrI AUGUSTUS gene 216127 219441 0.12 + . ID=g31 >! chrI AUGUSTUS transcript 216127 219441 0.12 + . ID=g31.t1;Parent=g31 >*************** >*** 1015 **** >! chrI AUGUSTUS five_prime_utr 216127 216217 0.3 + . Parent=g31.t1 >--- 1015 ---- >! chrI AUGUSTUS five_prime_utr 216127 216217 0.29 + . Parent=g31.t1 >*************** >*** 1017 **** >! chrI AUGUSTUS intron 216285 217089 0.41 + . Parent=g31.t1 >--- 1017 ---- >! chrI AUGUSTUS intron 216285 217089 0.42 + . Parent=g31.t1 >*************** >*** 1020,1022 **** >! chrI AUGUSTUS intron 219166 219217 0.6 + . Parent=g31.t1 >! chrI AUGUSTUS CDS 216218 216284 0.42 + 0 ID=g31.t1.cds;Parent=g31.t1 >! chrI AUGUSTUS CDS 217090 217193 0.98 + 2 ID=g31.t1.cds;Parent=g31.t1 >--- 1020,1022 ---- >! chrI AUGUSTUS intron 219166 219217 0.72 + . Parent=g31.t1 >! chrI AUGUSTUS CDS 216218 216284 0.45 + 0 ID=g31.t1.cds;Parent=g31.t1 >! chrI AUGUSTUS CDS 217090 217193 0.93 + 2 ID=g31.t1.cds;Parent=g31.t1 >*************** >*** 1024,1025 **** >! chrI AUGUSTUS CDS 218964 219165 0.99 + 1 ID=g31.t1.cds;Parent=g31.t1 >! chrI AUGUSTUS CDS 219218 219418 0.6 + 0 ID=g31.t1.cds;Parent=g31.t1 >--- 1024,1025 ---- >! chrI AUGUSTUS CDS 218964 219165 1 + 1 ID=g31.t1.cds;Parent=g31.t1 >! chrI AUGUSTUS CDS 219218 219418 0.72 + 0 ID=g31.t1.cds;Parent=g31.t1 >*************** >*** 1027 **** >! chrI AUGUSTUS three_prime_utr 219419 219441 0.45 + . Parent=g31.t1 >--- 1027 ---- >! chrI AUGUSTUS three_prime_utr 219419 219441 0.5 + . Parent=g31.t1 >*************** >*** 1045,1046 **** >! chrI AUGUSTUS gene 219479 222306 0.35 - . ID=g32 >! chrI AUGUSTUS transcript 219479 222306 0.35 - . ID=g32.t1;Parent=g32 >--- 1045,1046 ---- >! chrI AUGUSTUS gene 219479 222306 0.36 - . ID=g32 >! chrI AUGUSTUS transcript 219479 222306 0.36 - . ID=g32.t1;Parent=g32 >*************** >*** 1048 **** >! chrI AUGUSTUS three_prime_utr 219479 219546 0.88 - . Parent=g32.t1 >--- 1048 ---- >! chrI AUGUSTUS three_prime_utr 219479 219546 0.87 - . Parent=g32.t1 >*************** >*** 1051 **** >! chrI AUGUSTUS intron 220930 222082 1 - . Parent=g32.t1 >--- 1051 ---- >! chrI AUGUSTUS intron 220930 222082 0.99 - . Parent=g32.t1 >*************** >*** 1055,1056 **** >! chrI AUGUSTUS CDS 222083 222201 1 - 2 ID=g32.t1.cds;Parent=g32.t1 >! chrI AUGUSTUS CDS 222243 222264 0.4 - 0 ID=g32.t1.cds;Parent=g32.t1 >--- 1055,1056 ---- >! chrI AUGUSTUS CDS 222083 222201 0.99 - 2 ID=g32.t1.cds;Parent=g32.t1 >! chrI AUGUSTUS CDS 222243 222264 0.41 - 0 ID=g32.t1.cds;Parent=g32.t1 >*************** >*** 1058 **** >! chrI AUGUSTUS five_prime_utr 222265 222306 0.4 - . Parent=g32.t1 >--- 1058 ---- >! chrI AUGUSTUS five_prime_utr 222265 222306 0.39 - . Parent=g32.t1 >*************** >*** 1075,1076 **** >! chrI AUGUSTUS gene 223306 233186 0.12 - . ID=g33 >! chrI AUGUSTUS transcript 223306 233186 0.12 - . ID=g33.t1;Parent=g33 >--- 1075,1076 ---- >! chrI AUGUSTUS gene 223306 233186 0.16 - . ID=g33 >! chrI AUGUSTUS transcript 223306 233186 0.16 - . ID=g33.t1;Parent=g33 >*************** >*** 1078 **** >! chrI AUGUSTUS three_prime_utr 223306 223353 0.99 - . Parent=g33.t1 >--- 1078 ---- >! chrI AUGUSTUS three_prime_utr 223306 223353 0.98 - . Parent=g33.t1 >*************** >*** 1080,1081 **** >! chrI AUGUSTUS intron 223572 223629 0.96 - . Parent=g33.t1 >! chrI AUGUSTUS intron 223729 224301 0.72 - . Parent=g33.t1 >--- 1080,1081 ---- >! chrI AUGUSTUS intron 223572 223629 0.97 - . Parent=g33.t1 >! chrI AUGUSTUS intron 223729 224301 0.79 - . Parent=g33.t1 >*************** >*** 1083,1085 **** >! chrI AUGUSTUS intron 224890 225617 0.99 - . Parent=g33.t1 >! chrI AUGUSTUS intron 226412 226800 0.67 - . Parent=g33.t1 >! chrI AUGUSTUS intron 226945 226991 0.52 - . Parent=g33.t1 >--- 1083,1085 ---- >! chrI AUGUSTUS intron 224890 225617 1 - . Parent=g33.t1 >! chrI AUGUSTUS intron 226412 226800 0.8 - . Parent=g33.t1 >! chrI AUGUSTUS intron 226945 226991 0.51 - . Parent=g33.t1 >*************** >*** 1090 **** >! chrI AUGUSTUS intron 230413 230466 0.97 - . Parent=g33.t1 >--- 1090 ---- >! chrI AUGUSTUS intron 230413 230466 0.96 - . Parent=g33.t1 >*************** >*** 1094 **** >! chrI AUGUSTUS intron 231596 232847 0.88 - . Parent=g33.t1 >--- 1094 ---- >! chrI AUGUSTUS intron 231596 232847 0.87 - . Parent=g33.t1 >*************** >*** 1097,1098 **** >! chrI AUGUSTUS CDS 223630 223728 0.96 - 2 ID=g33.t1.cds;Parent=g33.t1 >! chrI AUGUSTUS CDS 224302 224476 0.75 - 0 ID=g33.t1.cds;Parent=g33.t1 >--- 1097,1098 ---- >! chrI AUGUSTUS CDS 223630 223728 0.97 - 2 ID=g33.t1.cds;Parent=g33.t1 >! chrI AUGUSTUS CDS 224302 224476 0.82 - 0 ID=g33.t1.cds;Parent=g33.t1 >*************** >*** 1100,1102 **** >! chrI AUGUSTUS CDS 225618 226411 0.99 - 0 ID=g33.t1.cds;Parent=g33.t1 >! chrI AUGUSTUS CDS 226801 226944 0.67 - 0 ID=g33.t1.cds;Parent=g33.t1 >! chrI AUGUSTUS CDS 226992 227111 0.52 - 0 ID=g33.t1.cds;Parent=g33.t1 >--- 1100,1102 ---- >! chrI AUGUSTUS CDS 225618 226411 1 - 0 ID=g33.t1.cds;Parent=g33.t1 >! chrI AUGUSTUS CDS 226801 226944 0.8 - 0 ID=g33.t1.cds;Parent=g33.t1 >! chrI AUGUSTUS CDS 226992 227111 0.51 - 0 ID=g33.t1.cds;Parent=g33.t1 >*************** >*** 1106 **** >! chrI AUGUSTUS CDS 230294 230412 1 - 2 ID=g33.t1.cds;Parent=g33.t1 >--- 1106 ---- >! chrI AUGUSTUS CDS 230294 230412 0.99 - 2 ID=g33.t1.cds;Parent=g33.t1 >*************** >*** 1109 **** >! chrI AUGUSTUS CDS 231185 231432 0.99 - 2 ID=g33.t1.cds;Parent=g33.t1 >--- 1109 ---- >! chrI AUGUSTUS CDS 231185 231432 1 - 2 ID=g33.t1.cds;Parent=g33.t1 >*************** >*** 1111 **** >! chrI AUGUSTUS CDS 232848 233014 0.88 - 0 ID=g33.t1.cds;Parent=g33.t1 >--- 1111 ---- >! chrI AUGUSTUS CDS 232848 233014 0.87 - 0 ID=g33.t1.cds;Parent=g33.t1 >*************** >*** 1114 **** >! chrI AUGUSTUS five_prime_utr 233101 233186 0.51 - . Parent=g33.t1 >--- 1114 ---- >! chrI AUGUSTUS five_prime_utr 233101 233186 0.46 - . Parent=g33.t1 >*************** >*** 1141,1142 **** >! chrI AUGUSTUS gene 233745 234876 0.7 - . ID=g34 >! chrI AUGUSTUS transcript 233745 234876 0.7 - . ID=g34.t1;Parent=g34 >--- 1141,1142 ---- >! chrI AUGUSTUS gene 233745 234876 0.62 - . ID=g34 >! chrI AUGUSTUS transcript 233745 234876 0.62 - . ID=g34.t1;Parent=g34 >*************** >*** 1144 **** >! chrI AUGUSTUS three_prime_utr 233745 233895 0.76 - . Parent=g34.t1 >--- 1144 ---- >! chrI AUGUSTUS three_prime_utr 233745 233895 0.73 - . Parent=g34.t1 >*************** >*** 1146 **** >! chrI AUGUSTUS intron 233977 234055 0.95 - . Parent=g34.t1 >--- 1146 ---- >! chrI AUGUSTUS intron 233977 234055 0.93 - . Parent=g34.t1 >*************** >*** 1150 **** >! chrI AUGUSTUS CDS 233896 233976 0.95 - 0 ID=g34.t1.cds;Parent=g34.t1 >--- 1150 ---- >! chrI AUGUSTUS CDS 233896 233976 0.93 - 0 ID=g34.t1.cds;Parent=g34.t1 >*************** >*** 1156 **** >! chrI AUGUSTUS five_prime_utr 234848 234876 0.91 - . Parent=g34.t1 >--- 1156 ---- >! chrI AUGUSTUS five_prime_utr 234848 234876 0.83 - . Parent=g34.t1 >*************** >*** 1172,1173 **** >! chrI AUGUSTUS gene 235606 241206 0.72 - . ID=g35 >! chrI AUGUSTUS transcript 235606 241206 0.72 - . ID=g35.t1;Parent=g35 >--- 1172,1173 ---- >! chrI AUGUSTUS gene 235606 241206 0.81 - . ID=g35 >! chrI AUGUSTUS transcript 235606 241206 0.81 - . ID=g35.t1;Parent=g35 >*************** >*** 1175 **** >! chrI AUGUSTUS three_prime_utr 235606 235641 0.95 - . Parent=g35.t1 >--- 1175 ---- >! chrI AUGUSTUS three_prime_utr 235606 235641 0.94 - . Parent=g35.t1 >*************** >*** 1195 **** >! chrI AUGUSTUS five_prime_utr 241073 241206 0.77 - . Parent=g35.t1 >--- 1195 ---- >! chrI AUGUSTUS five_prime_utr 241073 241206 0.86 - . Parent=g35.t1 >*************** >*** 1223,1224 **** >! chrI AUGUSTUS gene 242107 247297 0.15 + . ID=g36 >! chrI AUGUSTUS transcript 242107 247297 0.15 + . ID=g36.t1;Parent=g36 >--- 1223,1224 ---- >! chrI AUGUSTUS gene 242107 247297 0.1 + . ID=g36 >! chrI AUGUSTUS transcript 242107 247297 0.1 + . ID=g36.t1;Parent=g36 >*************** >*** 1226 **** >! chrI AUGUSTUS five_prime_utr 242107 242230 0.25 + . Parent=g36.t1 >--- 1226 ---- >! chrI AUGUSTUS five_prime_utr 242107 242230 0.28 + . Parent=g36.t1 >*************** >*** 1228,1231 **** >! chrI AUGUSTUS intron 242365 243403 0.94 + . Parent=g36.t1 >! chrI AUGUSTUS intron 243594 244085 0.91 + . Parent=g36.t1 >! chrI AUGUSTUS intron 244206 244358 0.96 + . Parent=g36.t1 >! chrI AUGUSTUS intron 244560 244776 0.83 + . Parent=g36.t1 >--- 1228,1231 ---- >! chrI AUGUSTUS intron 242365 243403 0.88 + . Parent=g36.t1 >! chrI AUGUSTUS intron 243594 244085 0.88 + . Parent=g36.t1 >! chrI AUGUSTUS intron 244206 244358 0.97 + . Parent=g36.t1 >! chrI AUGUSTUS intron 244560 244776 0.81 + . Parent=g36.t1 >*************** >*** 1233 **** >! chrI AUGUSTUS intron 245647 246140 1 + . Parent=g36.t1 >--- 1233 ---- >! chrI AUGUSTUS intron 245647 246140 0.99 + . Parent=g36.t1 >*************** >*** 1236,1238 **** >! chrI AUGUSTUS CDS 243404 243593 0.88 + 1 ID=g36.t1.cds;Parent=g36.t1 >! chrI AUGUSTUS CDS 244086 244205 0.98 + 0 ID=g36.t1.cds;Parent=g36.t1 >! chrI AUGUSTUS CDS 244359 244559 0.92 + 0 ID=g36.t1.cds;Parent=g36.t1 >--- 1236,1238 ---- >! chrI AUGUSTUS CDS 243404 243593 0.79 + 1 ID=g36.t1.cds;Parent=g36.t1 >! chrI AUGUSTUS CDS 244086 244205 0.97 + 0 ID=g36.t1.cds;Parent=g36.t1 >! chrI AUGUSTUS CDS 244359 244559 0.91 + 0 ID=g36.t1.cds;Parent=g36.t1 >*************** >*** 1240 **** >! chrI AUGUSTUS CDS 245527 245646 1 + 0 ID=g36.t1.cds;Parent=g36.t1 >--- 1240 ---- >! chrI AUGUSTUS CDS 245527 245646 0.99 + 0 ID=g36.t1.cds;Parent=g36.t1 >*************** >*** 1242 **** >! chrI AUGUSTUS CDS 247153 247224 0.99 + 0 ID=g36.t1.cds;Parent=g36.t1 >--- 1242 ---- >! chrI AUGUSTUS CDS 247153 247224 1 + 0 ID=g36.t1.cds;Parent=g36.t1 >*************** >*** 1244 **** >! chrI AUGUSTUS three_prime_utr 247225 247297 0.67 + . Parent=g36.t1 >--- 1244 ---- >! chrI AUGUSTUS three_prime_utr 247225 247297 0.66 + . Parent=g36.t1 >*************** >*** 1264,1265 **** >! chrI AUGUSTUS gene 247367 254902 0.06 + . ID=g37 >! chrI AUGUSTUS transcript 247367 254902 0.06 + . ID=g37.t1;Parent=g37 >--- 1264,1265 ---- >! chrI AUGUSTUS gene 247367 254902 0.02 + . ID=g37 >! chrI AUGUSTUS transcript 247367 254902 0.02 + . ID=g37.t1;Parent=g37 >*************** >*** 1267,1268 **** >! chrI AUGUSTUS five_prime_utr 247367 247473 0.2 + . Parent=g37.t1 >! chrI AUGUSTUS five_prime_utr 250132 250157 0.86 + . Parent=g37.t1 >--- 1267,1268 ---- >! chrI AUGUSTUS five_prime_utr 247367 247473 0.12 + . Parent=g37.t1 >! chrI AUGUSTUS five_prime_utr 250132 250157 0.75 + . Parent=g37.t1 >*************** >*** 1270,1274 **** >! chrI AUGUSTUS intron 250213 250271 0.98 + . Parent=g37.t1 >! chrI AUGUSTUS intron 250390 250711 0.95 + . Parent=g37.t1 >! chrI AUGUSTUS intron 250838 251467 0.98 + . Parent=g37.t1 >! chrI AUGUSTUS intron 251605 252339 0.99 + . Parent=g37.t1 >! chrI AUGUSTUS intron 252684 252882 1 + . Parent=g37.t1 >--- 1270,1274 ---- >! chrI AUGUSTUS intron 250213 250271 1 + . Parent=g37.t1 >! chrI AUGUSTUS intron 250390 250711 0.93 + . Parent=g37.t1 >! chrI AUGUSTUS intron 250838 251467 0.93 + . Parent=g37.t1 >! chrI AUGUSTUS intron 251605 252339 1 + . Parent=g37.t1 >! chrI AUGUSTUS intron 252684 252882 0.99 + . Parent=g37.t1 >*************** >*** 1277 **** >! chrI AUGUSTUS intron 253850 253950 1 + . Parent=g37.t1 >--- 1277 ---- >! chrI AUGUSTUS intron 253850 253950 0.99 + . Parent=g37.t1 >*************** >*** 1280,1285 **** >! chrI AUGUSTUS intron 254584 254695 1 + . Parent=g37.t1 >! chrI AUGUSTUS CDS 250158 250212 0.85 + 0 ID=g37.t1.cds;Parent=g37.t1 >! chrI AUGUSTUS CDS 250272 250389 0.97 + 2 ID=g37.t1.cds;Parent=g37.t1 >! chrI AUGUSTUS CDS 250712 250837 0.97 + 1 ID=g37.t1.cds;Parent=g37.t1 >! chrI AUGUSTUS CDS 251468 251604 0.99 + 1 ID=g37.t1.cds;Parent=g37.t1 >! chrI AUGUSTUS CDS 252340 252683 0.83 + 2 ID=g37.t1.cds;Parent=g37.t1 >--- 1280,1285 ---- >! chrI AUGUSTUS intron 254584 254695 0.99 + . Parent=g37.t1 >! chrI AUGUSTUS CDS 250158 250212 0.76 + 0 ID=g37.t1.cds;Parent=g37.t1 >! chrI AUGUSTUS CDS 250272 250389 1 + 2 ID=g37.t1.cds;Parent=g37.t1 >! chrI AUGUSTUS CDS 250712 250837 0.93 + 1 ID=g37.t1.cds;Parent=g37.t1 >! chrI AUGUSTUS CDS 251468 251604 1 + 1 ID=g37.t1.cds;Parent=g37.t1 >! chrI AUGUSTUS CDS 252340 252683 0.87 + 2 ID=g37.t1.cds;Parent=g37.t1 >*************** >*** 1288 **** >! chrI AUGUSTUS CDS 253698 253849 1 + 2 ID=g37.t1.cds;Parent=g37.t1 >--- 1288 ---- >! chrI AUGUSTUS CDS 253698 253849 0.99 + 2 ID=g37.t1.cds;Parent=g37.t1 >*************** >*** 1291 **** >! chrI AUGUSTUS CDS 254411 254583 1 + 2 ID=g37.t1.cds;Parent=g37.t1 >--- 1291 ---- >! chrI AUGUSTUS CDS 254411 254583 0.99 + 2 ID=g37.t1.cds;Parent=g37.t1 >*************** >*** 1294 **** >! chrI AUGUSTUS three_prime_utr 254801 254902 0.47 + . Parent=g37.t1 >--- 1294 ---- >! chrI AUGUSTUS three_prime_utr 254801 254902 0.45 + . Parent=g37.t1 >*************** >*** 1315,1316 **** >! chrI AUGUSTUS gene 255928 272896 0.06 - . ID=g38 >! chrI AUGUSTUS transcript 255928 272896 0.06 - . ID=g38.t1;Parent=g38 >--- 1315,1316 ---- >! chrI AUGUSTUS gene 255928 272896 0.08 - . ID=g38 >! chrI AUGUSTUS transcript 255928 272896 0.08 - . ID=g38.t1;Parent=g38 >*************** >*** 1318 **** >! chrI AUGUSTUS three_prime_utr 255928 256152 0.62 - . Parent=g38.t1 >--- 1318 ---- >! chrI AUGUSTUS three_prime_utr 255928 256152 0.61 - . Parent=g38.t1 >*************** >*** 1321 **** >! chrI AUGUSTUS intron 257409 258591 0.6 - . Parent=g38.t1 >--- 1321 ---- >! chrI AUGUSTUS intron 257409 258591 0.67 - . Parent=g38.t1 >*************** >*** 1324,1325 **** >! chrI AUGUSTUS intron 259218 259256 0.96 - . Parent=g38.t1 >! chrI AUGUSTUS intron 259521 260370 0.99 - . Parent=g38.t1 >--- 1324,1325 ---- >! chrI AUGUSTUS intron 259218 259256 0.91 - . Parent=g38.t1 >! chrI AUGUSTUS intron 259521 260370 1 - . Parent=g38.t1 >*************** >*** 1330 **** >! chrI AUGUSTUS intron 262439 262480 0.97 - . Parent=g38.t1 >--- 1330 ---- >! chrI AUGUSTUS intron 262439 262480 0.98 - . Parent=g38.t1 >*************** >*** 1332 **** >! chrI AUGUSTUS intron 264453 264523 0.98 - . Parent=g38.t1 >--- 1332 ---- >! chrI AUGUSTUS intron 264453 264523 0.99 - . Parent=g38.t1 >*************** >*** 1334 **** >! chrI AUGUSTUS intron 264846 265487 0.98 - . Parent=g38.t1 >--- 1334 ---- >! chrI AUGUSTUS intron 264846 265487 0.95 - . Parent=g38.t1 >*************** >*** 1343 **** >! chrI AUGUSTUS intron 268932 268976 0.99 - . Parent=g38.t1 >--- 1343 ---- >! chrI AUGUSTUS intron 268932 268976 1 - . Parent=g38.t1 >*************** >*** 1345 **** >! chrI AUGUSTUS intron 269357 270205 0.97 - . Parent=g38.t1 >--- 1345 ---- >! chrI AUGUSTUS intron 269357 270205 0.99 - . Parent=g38.t1 >*************** >*** 1347 **** >! chrI AUGUSTUS intron 270665 271637 0.97 - . Parent=g38.t1 >--- 1347 ---- >! chrI AUGUSTUS intron 270665 271637 0.99 - . Parent=g38.t1 >*************** >*** 1350 **** >! chrI AUGUSTUS intron 272634 272687 0.49 - . Parent=g38.t1 >--- 1350 ---- >! chrI AUGUSTUS intron 272634 272687 0.53 - . Parent=g38.t1 >*************** >*** 1352,1353 **** >! chrI AUGUSTUS CDS 257053 257408 0.59 - 2 ID=g38.t1.cds;Parent=g38.t1 >! chrI AUGUSTUS CDS 258592 258833 0.73 - 1 ID=g38.t1.cds;Parent=g38.t1 >--- 1352,1353 ---- >! chrI AUGUSTUS CDS 257053 257408 0.65 - 2 ID=g38.t1.cds;Parent=g38.t1 >! chrI AUGUSTUS CDS 258592 258833 0.77 - 1 ID=g38.t1.cds;Parent=g38.t1 >*************** >*** 1356,1357 **** >! chrI AUGUSTUS CDS 259257 259520 0.96 - 0 ID=g38.t1.cds;Parent=g38.t1 >! chrI AUGUSTUS CDS 260371 260630 0.99 - 2 ID=g38.t1.cds;Parent=g38.t1 >--- 1356,1357 ---- >! chrI AUGUSTUS CDS 259257 259520 0.91 - 0 ID=g38.t1.cds;Parent=g38.t1 >! chrI AUGUSTUS CDS 260371 260630 1 - 2 ID=g38.t1.cds;Parent=g38.t1 >*************** >*** 1360 **** >! chrI AUGUSTUS CDS 261662 261785 1 - 1 ID=g38.t1.cds;Parent=g38.t1 >--- 1360 ---- >! chrI AUGUSTUS CDS 261662 261785 0.99 - 1 ID=g38.t1.cds;Parent=g38.t1 >*************** >*** 1363,1364 **** >! chrI AUGUSTUS CDS 264237 264452 0.99 - 2 ID=g38.t1.cds;Parent=g38.t1 >! chrI AUGUSTUS CDS 264524 264663 0.98 - 1 ID=g38.t1.cds;Parent=g38.t1 >--- 1363,1364 ---- >! chrI AUGUSTUS CDS 264237 264452 1 - 2 ID=g38.t1.cds;Parent=g38.t1 >! chrI AUGUSTUS CDS 264524 264663 0.99 - 1 ID=g38.t1.cds;Parent=g38.t1 >*************** >*** 1366 **** >! chrI AUGUSTUS CDS 265488 265570 0.98 - 0 ID=g38.t1.cds;Parent=g38.t1 >--- 1366 ---- >! chrI AUGUSTUS CDS 265488 265570 0.95 - 0 ID=g38.t1.cds;Parent=g38.t1 >*************** >*** 1374,1375 **** >! chrI AUGUSTUS CDS 268805 268931 0.99 - 0 ID=g38.t1.cds;Parent=g38.t1 >! chrI AUGUSTUS CDS 268977 269192 0.99 - 0 ID=g38.t1.cds;Parent=g38.t1 >--- 1374,1375 ---- >! chrI AUGUSTUS CDS 268805 268931 1 - 0 ID=g38.t1.cds;Parent=g38.t1 >! chrI AUGUSTUS CDS 268977 269192 1 - 0 ID=g38.t1.cds;Parent=g38.t1 >*************** >*** 1377 **** >! chrI AUGUSTUS CDS 270206 270392 0.97 - 1 ID=g38.t1.cds;Parent=g38.t1 >--- 1377 ---- >! chrI AUGUSTUS CDS 270206 270392 0.99 - 1 ID=g38.t1.cds;Parent=g38.t1 >*************** >*** 1379 **** >! chrI AUGUSTUS CDS 271638 272118 0.97 - 1 ID=g38.t1.cds;Parent=g38.t1 >--- 1379 ---- >! chrI AUGUSTUS CDS 271638 272118 0.99 - 1 ID=g38.t1.cds;Parent=g38.t1 >*************** >*** 1382 **** >! chrI AUGUSTUS CDS 272688 272867 0.49 - 0 ID=g38.t1.cds;Parent=g38.t1 >--- 1382 ---- >! chrI AUGUSTUS CDS 272688 272867 0.5 - 0 ID=g38.t1.cds;Parent=g38.t1 >*************** >*** 1384 **** >! chrI AUGUSTUS five_prime_utr 272868 272896 0.44 - . Parent=g38.t1 >--- 1384 ---- >! chrI AUGUSTUS five_prime_utr 272868 272896 0.51 - . Parent=g38.t1 >*************** >*** 1419,1420 **** >! chrI AUGUSTUS gene 278477 280841 0.12 + . ID=g39 >! chrI AUGUSTUS transcript 278477 280841 0.12 + . ID=g39.t1;Parent=g39 >--- 1419,1420 ---- >! chrI AUGUSTUS gene 278477 280841 0.14 + . ID=g39 >! chrI AUGUSTUS transcript 278477 280841 0.14 + . ID=g39.t1;Parent=g39 >*************** >*** 1422,1423 **** >! chrI AUGUSTUS five_prime_utr 278477 278489 0.27 + . Parent=g39.t1 >! chrI AUGUSTUS five_prime_utr 279788 279847 0.84 + . Parent=g39.t1 >--- 1422,1423 ---- >! chrI AUGUSTUS five_prime_utr 278477 278489 0.36 + . Parent=g39.t1 >! chrI AUGUSTUS five_prime_utr 279788 279847 0.76 + . Parent=g39.t1 >*************** >*** 1425,1427 **** >! chrI AUGUSTUS intron 279917 280387 1 + . Parent=g39.t1 >! chrI AUGUSTUS CDS 279848 279916 0.85 + 0 ID=g39.t1.cds;Parent=g39.t1 >! chrI AUGUSTUS CDS 280388 280801 0.97 + 0 ID=g39.t1.cds;Parent=g39.t1 >--- 1425,1427 ---- >! chrI AUGUSTUS intron 279917 280387 0.99 + . Parent=g39.t1 >! chrI AUGUSTUS CDS 279848 279916 0.75 + 0 ID=g39.t1.cds;Parent=g39.t1 >! chrI AUGUSTUS CDS 280388 280801 0.99 + 0 ID=g39.t1.cds;Parent=g39.t1 >*************** >*** 1429 **** >! chrI AUGUSTUS three_prime_utr 280802 280841 0.47 + . Parent=g39.t1 >--- 1429 ---- >! chrI AUGUSTUS three_prime_utr 280802 280841 0.53 + . Parent=g39.t1 >*************** >*** 1445,1446 **** >! chrI AUGUSTUS gene 281540 291476 0.12 - . ID=g40 >! chrI AUGUSTUS transcript 281540 291476 0.12 - . ID=g40.t1;Parent=g40 >--- 1445,1446 ---- >! chrI AUGUSTUS gene 281540 291476 0.16 - . ID=g40 >! chrI AUGUSTUS transcript 281540 291476 0.16 - . ID=g40.t1;Parent=g40 >*************** >*** 1448 **** >! chrI AUGUSTUS three_prime_utr 281540 281620 0.64 - . Parent=g40.t1 >--- 1448 ---- >! chrI AUGUSTUS three_prime_utr 281540 281620 0.6 - . Parent=g40.t1 >*************** >*** 1452 **** >! chrI AUGUSTUS intron 284982 286070 0.96 - . Parent=g40.t1 >--- 1452 ---- >! chrI AUGUSTUS intron 284982 286070 0.97 - . Parent=g40.t1 >*************** >*** 1456,1457 **** >! chrI AUGUSTUS intron 289589 289643 0.99 - . Parent=g40.t1 >! chrI AUGUSTUS intron 289755 291278 0.26 - . Parent=g40.t1 >--- 1456,1457 ---- >! chrI AUGUSTUS intron 289589 289643 1 - . Parent=g40.t1 >! chrI AUGUSTUS intron 289755 291278 0.28 - . Parent=g40.t1 >*************** >*** 1461 **** >! chrI AUGUSTUS CDS 286071 286181 0.96 - 0 ID=g40.t1.cds;Parent=g40.t1 >--- 1461 ---- >! chrI AUGUSTUS CDS 286071 286181 0.97 - 0 ID=g40.t1.cds;Parent=g40.t1 >*************** >*** 1465,1466 **** >! chrI AUGUSTUS CDS 289644 289754 0.26 - 0 ID=g40.t1.cds;Parent=g40.t1 >! chrI AUGUSTUS CDS 291279 291401 0.27 - 0 ID=g40.t1.cds;Parent=g40.t1 >--- 1465,1466 ---- >! chrI AUGUSTUS CDS 289644 289754 0.29 - 0 ID=g40.t1.cds;Parent=g40.t1 >! chrI AUGUSTUS CDS 291279 291401 0.28 - 0 ID=g40.t1.cds;Parent=g40.t1 >*************** >*** 1468 **** >! chrI AUGUSTUS five_prime_utr 291402 291476 0.25 - . Parent=g40.t1 >--- 1468 ---- >! chrI AUGUSTUS five_prime_utr 291402 291476 0.29 - . Parent=g40.t1 >*************** >*** 1487,1488 **** >! chrI AUGUSTUS gene 293167 297325 0.31 + . ID=g41 >! chrI AUGUSTUS transcript 293167 297325 0.31 + . ID=g41.t1;Parent=g41 >--- 1487,1488 ---- >! chrI AUGUSTUS gene 293167 297325 0.38 + . ID=g41 >! chrI AUGUSTUS transcript 293167 297325 0.38 + . ID=g41.t1;Parent=g41 >*************** >*** 1490 **** >! chrI AUGUSTUS five_prime_utr 293167 293217 0.43 + . Parent=g41.t1 >--- 1490 ---- >! chrI AUGUSTUS five_prime_utr 293167 293217 0.48 + . Parent=g41.t1 >*************** >*** 1492,1493 **** >! chrI AUGUSTUS intron 295213 296230 1 + . Parent=g41.t1 >! chrI AUGUSTUS CDS 293218 295212 1 + 0 ID=g41.t1.cds;Parent=g41.t1 >--- 1492,1493 ---- >! chrI AUGUSTUS intron 295213 296230 0.99 + . Parent=g41.t1 >! chrI AUGUSTUS CDS 293218 295212 0.99 + 0 ID=g41.t1.cds;Parent=g41.t1 >*************** >*** 1496,1497 **** >! chrI AUGUSTUS three_prime_utr 296603 296656 0.82 + . Parent=g41.t1 >! chrI AUGUSTUS three_prime_utr 297066 297325 0.81 + . Parent=g41.t1 >--- 1496,1497 ---- >! chrI AUGUSTUS three_prime_utr 296603 296656 0.85 + . Parent=g41.t1 >! chrI AUGUSTUS three_prime_utr 297066 297325 0.88 + . Parent=g41.t1 >*************** >*** 1521,1522 **** >! chrI AUGUSTUS gene 300047 302761 0.11 + . ID=g42 >! chrI AUGUSTUS transcript 300047 302761 0.11 + . ID=g42.t1;Parent=g42 >--- 1521,1522 ---- >! chrI AUGUSTUS gene 300047 302761 0.16 + . ID=g42 >! chrI AUGUSTUS transcript 300047 302761 0.16 + . ID=g42.t1;Parent=g42 >*************** >*** 1524 **** >! chrI AUGUSTUS five_prime_utr 300047 300113 0.21 + . Parent=g42.t1 >--- 1524 ---- >! chrI AUGUSTUS five_prime_utr 300047 300113 0.29 + . Parent=g42.t1 >*************** >*** 1530 **** >! chrI AUGUSTUS CDS 300721 302634 0.99 + 0 ID=g42.t1.cds;Parent=g42.t1 >--- 1530 ---- >! chrI AUGUSTUS CDS 300721 302634 1 + 0 ID=g42.t1.cds;Parent=g42.t1 >*************** >*** 1532 **** >! chrI AUGUSTUS three_prime_utr 302635 302761 0.47 + . Parent=g42.t1 >--- 1532 ---- >! chrI AUGUSTUS three_prime_utr 302635 302761 0.55 + . Parent=g42.t1 >*************** >*** 1554,1555 **** >! chrI AUGUSTUS gene 302765 306816 0.16 - . ID=g43 >! chrI AUGUSTUS transcript 302765 306816 0.16 - . ID=g43.t1;Parent=g43 >--- 1554,1555 ---- >! chrI AUGUSTUS gene 302765 306816 0.29 - . ID=g43 >! chrI AUGUSTUS transcript 302765 306816 0.29 - . ID=g43.t1;Parent=g43 >*************** >*** 1557 **** >! chrI AUGUSTUS three_prime_utr 302765 302798 0.79 - . Parent=g43.t1 >--- 1557 ---- >! chrI AUGUSTUS three_prime_utr 302765 302798 0.89 - . Parent=g43.t1 >*************** >*** 1563 **** >! chrI AUGUSTUS intron 304846 304899 0.98 - . Parent=g43.t1 >--- 1563 ---- >! chrI AUGUSTUS intron 304846 304899 0.99 - . Parent=g43.t1 >*************** >*** 1570,1572 **** >! chrI AUGUSTUS CDS 304249 304394 0.63 - 1 ID=g43.t1.cds;Parent=g43.t1 >! chrI AUGUSTUS CDS 304763 304845 0.38 - 0 ID=g43.t1.cds;Parent=g43.t1 >! chrI AUGUSTUS CDS 304900 305580 1 - 0 ID=g43.t1.cds;Parent=g43.t1 >--- 1570,1572 ---- >! chrI AUGUSTUS CDS 304249 304394 0.69 - 1 ID=g43.t1.cds;Parent=g43.t1 >! chrI AUGUSTUS CDS 304763 304845 0.39 - 0 ID=g43.t1.cds;Parent=g43.t1 >! chrI AUGUSTUS CDS 304900 305580 0.99 - 0 ID=g43.t1.cds;Parent=g43.t1 >*************** >*** 1577 **** >! chrI AUGUSTUS five_prime_utr 306788 306816 0.77 - . Parent=g43.t1 >--- 1577 ---- >! chrI AUGUSTUS five_prime_utr 306788 306816 0.79 - . Parent=g43.t1 >*************** >*** 1603,1604 **** >! chrI AUGUSTUS gene 307337 308860 0.19 + . ID=g44 >! chrI AUGUSTUS transcript 307337 308860 0.19 + . ID=g44.t1;Parent=g44 >--- 1603,1604 ---- >! chrI AUGUSTUS gene 307337 308860 0.16 + . ID=g44 >! chrI AUGUSTUS transcript 307337 308860 0.16 + . ID=g44.t1;Parent=g44 >*************** >*** 1606 **** >! chrI AUGUSTUS five_prime_utr 307337 307410 0.4 + . Parent=g44.t1 >--- 1606 ---- >! chrI AUGUSTUS five_prime_utr 307337 307410 0.38 + . Parent=g44.t1 >*************** >*** 1612,1613 **** >! chrI AUGUSTUS CDS 307537 307891 0.98 + 1 ID=g44.t1.cds;Parent=g44.t1 >! chrI AUGUSTUS CDS 307963 308542 1 + 0 ID=g44.t1.cds;Parent=g44.t1 >--- 1612,1613 ---- >! chrI AUGUSTUS CDS 307537 307891 0.97 + 1 ID=g44.t1.cds;Parent=g44.t1 >! chrI AUGUSTUS CDS 307963 308542 0.99 + 0 ID=g44.t1.cds;Parent=g44.t1 >*************** >*** 1616 **** >! chrI AUGUSTUS three_prime_utr 308784 308860 0.49 + . Parent=g44.t1 >--- 1616 ---- >! chrI AUGUSTUS three_prime_utr 308784 308860 0.46 + . Parent=g44.t1 >*************** >*** 1635,1636 **** >! chrI AUGUSTUS gene 308947 312101 0.08 + . ID=g45 >! chrI AUGUSTUS transcript 308947 312101 0.08 + . ID=g45.t1;Parent=g45 >--- 1635,1636 ---- >! chrI AUGUSTUS gene 308947 312101 0.05 + . ID=g45 >! chrI AUGUSTUS transcript 308947 312101 0.05 + . ID=g45.t1;Parent=g45 >*************** >*** 1638 **** >! chrI AUGUSTUS five_prime_utr 308947 308977 0.28 + . Parent=g45.t1 >--- 1638 ---- >! chrI AUGUSTUS five_prime_utr 308947 308977 0.32 + . Parent=g45.t1 >*************** >*** 1645,1646 **** >! chrI AUGUSTUS CDS 308978 309210 0.92 + 0 ID=g45.t1.cds;Parent=g45.t1 >! chrI AUGUSTUS CDS 309518 309677 0.91 + 1 ID=g45.t1.cds;Parent=g45.t1 >--- 1645,1646 ---- >! chrI AUGUSTUS CDS 308978 309210 0.91 + 0 ID=g45.t1.cds;Parent=g45.t1 >! chrI AUGUSTUS CDS 309518 309677 0.92 + 1 ID=g45.t1.cds;Parent=g45.t1 >*************** >*** 1650 **** >! chrI AUGUSTUS CDS 311843 312046 0.99 + 0 ID=g45.t1.cds;Parent=g45.t1 >--- 1650 ---- >! chrI AUGUSTUS CDS 311843 312046 0.96 + 0 ID=g45.t1.cds;Parent=g45.t1 >*************** >*** 1652 **** >! chrI AUGUSTUS three_prime_utr 312047 312101 0.34 + . Parent=g45.t1 >--- 1652 ---- >! chrI AUGUSTUS three_prime_utr 312047 312101 0.19 + . Parent=g45.t1 >*************** >*** 1671,1672 **** >! chrI AUGUSTUS gene 312457 312986 0.26 + . ID=g46 >! chrI AUGUSTUS transcript 312457 312986 0.26 + . ID=g46.t1;Parent=g46 >--- 1671,1672 ---- >! chrI AUGUSTUS gene 312457 312986 0.29 + . ID=g46 >! chrI AUGUSTUS transcript 312457 312986 0.29 + . ID=g46.t1;Parent=g46 >*************** >*** 1676,1677 **** >! chrI AUGUSTUS intron 312700 312750 0.99 + . Parent=g46.t1 >! chrI AUGUSTUS CDS 312511 312699 0.98 + 0 ID=g46.t1.cds;Parent=g46.t1 >--- 1676,1677 ---- >! chrI AUGUSTUS intron 312700 312750 1 + . Parent=g46.t1 >! chrI AUGUSTUS CDS 312511 312699 0.96 + 0 ID=g46.t1.cds;Parent=g46.t1 >*************** >*** 1680 **** >! chrI AUGUSTUS three_prime_utr 312898 312986 0.77 + . Parent=g46.t1 >--- 1680 ---- >! chrI AUGUSTUS three_prime_utr 312898 312986 0.84 + . Parent=g46.t1 >*************** >*** 1695,1696 **** >! chrI AUGUSTUS gene 313207 315994 0.09 + . ID=g47 >! chrI AUGUSTUS transcript 313207 315994 0.09 + . ID=g47.t1;Parent=g47 >--- 1695,1696 ---- >! chrI AUGUSTUS gene 313207 315994 0.15 + . ID=g47 >! chrI AUGUSTUS transcript 313207 315994 0.15 + . ID=g47.t1;Parent=g47 >*************** >*** 1698 **** >! chrI AUGUSTUS five_prime_utr 313207 313311 0.17 + . Parent=g47.t1 >--- 1698 ---- >! chrI AUGUSTUS five_prime_utr 313207 313311 0.27 + . Parent=g47.t1 >*************** >*** 1700 **** >! chrI AUGUSTUS intron 313322 313375 0.97 + . Parent=g47.t1 >--- 1700 ---- >! chrI AUGUSTUS intron 313322 313375 1 + . Parent=g47.t1 >*************** >*** 1703 **** >! chrI AUGUSTUS intron 314163 314996 0.97 + . Parent=g47.t1 >--- 1703 ---- >! chrI AUGUSTUS intron 314163 314996 0.98 + . Parent=g47.t1 >*************** >*** 1705,1706 **** >! chrI AUGUSTUS CDS 313312 313321 0.99 + 0 ID=g47.t1.cds;Parent=g47.t1 >! chrI AUGUSTUS CDS 313376 313464 0.97 + 2 ID=g47.t1.cds;Parent=g47.t1 >--- 1705,1706 ---- >! chrI AUGUSTUS CDS 313312 313321 1 + 0 ID=g47.t1.cds;Parent=g47.t1 >! chrI AUGUSTUS CDS 313376 313464 1 + 2 ID=g47.t1.cds;Parent=g47.t1 >*************** >*** 1712 **** >! chrI AUGUSTUS three_prime_utr 315762 315994 0.6 + . Parent=g47.t1 >--- 1712 ---- >! chrI AUGUSTUS three_prime_utr 315762 315994 0.53 + . Parent=g47.t1 >*************** >*** 1731,1732 **** >! chrI AUGUSTUS gene 316277 318304 0.74 + . ID=g48 >! chrI AUGUSTUS transcript 316277 318304 0.74 + . ID=g48.t1;Parent=g48 >--- 1731,1732 ---- >! chrI AUGUSTUS gene 316277 318304 0.87 + . ID=g48 >! chrI AUGUSTUS transcript 316277 318304 0.87 + . ID=g48.t1;Parent=g48 >*************** >*** 1734 **** >! chrI AUGUSTUS five_prime_utr 316277 316309 0.81 + . Parent=g48.t1 >--- 1734 ---- >! chrI AUGUSTUS five_prime_utr 316277 316309 0.91 + . Parent=g48.t1 >*************** >*** 1746 **** >! chrI AUGUSTUS three_prime_utr 317943 318304 0.9 + . Parent=g48.t1 >--- 1746 ---- >! chrI AUGUSTUS three_prime_utr 317943 318304 0.95 + . Parent=g48.t1 >*************** >*** 1766,1767 **** >! chrI AUGUSTUS gene 318326 321846 0.68 - . ID=g49 >! chrI AUGUSTUS transcript 318326 321846 0.68 - . ID=g49.t1;Parent=g49 >--- 1766,1767 ---- >! chrI AUGUSTUS gene 318326 321846 0.56 - . ID=g49 >! chrI AUGUSTUS transcript 318326 321846 0.56 - . ID=g49.t1;Parent=g49 >*************** >*** 1769 **** >! chrI AUGUSTUS three_prime_utr 318326 318427 0.93 - . Parent=g49.t1 >--- 1769 ---- >! chrI AUGUSTUS three_prime_utr 318326 318427 0.88 - . Parent=g49.t1 >*************** >*** 1775 **** >! chrI AUGUSTUS intron 321555 321624 0.99 - . Parent=g49.t1 >--- 1775 ---- >! chrI AUGUSTUS intron 321555 321624 0.98 - . Parent=g49.t1 >*************** >*** 1782 **** >! chrI AUGUSTUS CDS 321625 321681 0.99 - 2 ID=g49.t1.cds;Parent=g49.t1 >--- 1782 ---- >! chrI AUGUSTUS CDS 321625 321681 0.98 - 2 ID=g49.t1.cds;Parent=g49.t1 >*************** >*** 1785 **** >! chrI AUGUSTUS five_prime_utr 321812 321846 0.74 - . Parent=g49.t1 >--- 1785 ---- >! chrI AUGUSTUS five_prime_utr 321812 321846 0.67 - . Parent=g49.t1 >*************** >*** 1808,1809 **** >! chrI AUGUSTUS gene 322019 322596 0.1 - . ID=g50 >! chrI AUGUSTUS transcript 322019 322596 0.1 - . ID=g50.t1;Parent=g50 >--- 1808,1809 ---- >! chrI AUGUSTUS gene 322019 322596 0.06 - . ID=g50 >! chrI AUGUSTUS transcript 322019 322596 0.06 - . ID=g50.t1;Parent=g50 >*************** >*** 1811 **** >! chrI AUGUSTUS three_prime_utr 322019 322076 0.39 - . Parent=g50.t1 >--- 1811 ---- >! chrI AUGUSTUS three_prime_utr 322019 322076 0.32 - . Parent=g50.t1 >*************** >*** 1817 **** >! chrI AUGUSTUS CDS 322449 322552 0.64 - 0 ID=g50.t1.cds;Parent=g50.t1 >--- 1817 ---- >! chrI AUGUSTUS CDS 322449 322552 0.61 - 0 ID=g50.t1.cds;Parent=g50.t1 >*************** >*** 1819 **** >! chrI AUGUSTUS five_prime_utr 322553 322596 0.32 - . Parent=g50.t1 >--- 1819 ---- >! chrI AUGUSTUS five_prime_utr 322553 322596 0.22 - . Parent=g50.t1 >*************** >*** 1835,1836 **** >! chrI AUGUSTUS gene 324048 327306 0.48 - . ID=g51 >! chrI AUGUSTUS transcript 324048 327306 0.48 - . ID=g51.t1;Parent=g51 >--- 1835,1836 ---- >! chrI AUGUSTUS gene 324048 327306 0.4 - . ID=g51 >! chrI AUGUSTUS transcript 324048 327306 0.4 - . ID=g51.t1;Parent=g51 >*************** >*** 1838 **** >! chrI AUGUSTUS three_prime_utr 324048 324082 0.98 - . Parent=g51.t1 >--- 1838 ---- >! chrI AUGUSTUS three_prime_utr 324048 324082 0.96 - . Parent=g51.t1 >*************** >*** 1841 **** >! chrI AUGUSTUS intron 324464 325335 0.8 - . Parent=g51.t1 >--- 1841 ---- >! chrI AUGUSTUS intron 324464 325335 0.87 - . Parent=g51.t1 >*************** >*** 1844 **** >! chrI AUGUSTUS intron 326587 326851 0.98 - . Parent=g51.t1 >--- 1844 ---- >! chrI AUGUSTUS intron 326587 326851 0.99 - . Parent=g51.t1 >*************** >*** 1846 **** >! chrI AUGUSTUS CDS 324083 324269 0.98 - 1 ID=g51.t1.cds;Parent=g51.t1 >--- 1846 ---- >! chrI AUGUSTUS CDS 324083 324269 0.96 - 1 ID=g51.t1.cds;Parent=g51.t1 >*************** >*** 1848 **** >! chrI AUGUSTUS CDS 325336 325804 0.87 - 1 ID=g51.t1.cds;Parent=g51.t1 >--- 1848 ---- >! chrI AUGUSTUS CDS 325336 325804 0.91 - 1 ID=g51.t1.cds;Parent=g51.t1 >*************** >*** 1850 **** >! chrI AUGUSTUS CDS 326227 326586 0.99 - 0 ID=g51.t1.cds;Parent=g51.t1 >--- 1850 ---- >! chrI AUGUSTUS CDS 326227 326586 1 - 0 ID=g51.t1.cds;Parent=g51.t1 >*************** >*** 1854 **** >! chrI AUGUSTUS five_prime_utr 327254 327306 0.62 - . Parent=g51.t1 >--- 1854 ---- >! chrI AUGUSTUS five_prime_utr 327254 327306 0.48 - . Parent=g51.t1 >*************** >*** 1876,1877 **** >! chrI AUGUSTUS gene 327717 330220 0.27 + . ID=g52 >! chrI AUGUSTUS transcript 327717 330220 0.27 + . ID=g52.t1;Parent=g52 >--- 1876,1877 ---- >! chrI AUGUSTUS gene 327717 330220 0.28 + . ID=g52 >! chrI AUGUSTUS transcript 327717 330220 0.28 + . ID=g52.t1;Parent=g52 >*************** >*** 1879 **** >! chrI AUGUSTUS five_prime_utr 327717 327890 0.35 + . Parent=g52.t1 >--- 1879 ---- >! chrI AUGUSTUS five_prime_utr 327717 327890 0.36 + . Parent=g52.t1 >*************** >*** 1881,1885 **** >! chrI AUGUSTUS intron 327922 328934 0.89 + . Parent=g52.t1 >! chrI AUGUSTUS intron 329054 329921 0.7 + . Parent=g52.t1 >! chrI AUGUSTUS CDS 327891 327921 0.47 + 0 ID=g52.t1.cds;Parent=g52.t1 >! chrI AUGUSTUS CDS 328935 329053 0.7 + 2 ID=g52.t1.cds;Parent=g52.t1 >! chrI AUGUSTUS CDS 329922 330155 0.9 + 0 ID=g52.t1.cds;Parent=g52.t1 >--- 1881,1885 ---- >! chrI AUGUSTUS intron 327922 328934 0.82 + . Parent=g52.t1 >! chrI AUGUSTUS intron 329054 329921 0.67 + . Parent=g52.t1 >! chrI AUGUSTUS CDS 327891 327921 0.39 + 0 ID=g52.t1.cds;Parent=g52.t1 >! chrI AUGUSTUS CDS 328935 329053 0.67 + 2 ID=g52.t1.cds;Parent=g52.t1 >! chrI AUGUSTUS CDS 329922 330155 0.93 + 0 ID=g52.t1.cds;Parent=g52.t1 >*************** >*** 1887 **** >! chrI AUGUSTUS three_prime_utr 330156 330220 0.93 + . Parent=g52.t1 >--- 1887 ---- >! chrI AUGUSTUS three_prime_utr 330156 330220 0.91 + . Parent=g52.t1 >*************** >*** 1903,1904 **** >! chrI AUGUSTUS gene 330895 332646 0.27 - . ID=g53 >! chrI AUGUSTUS transcript 330895 332646 0.27 - . ID=g53.t1;Parent=g53 >--- 1903,1904 ---- >! chrI AUGUSTUS gene 330895 332646 0.3 - . ID=g53 >! chrI AUGUSTUS transcript 330895 332646 0.3 - . ID=g53.t1;Parent=g53 >*************** >*** 1906 **** >! chrI AUGUSTUS three_prime_utr 330895 330962 0.69 - . Parent=g53.t1 >--- 1906 ---- >! chrI AUGUSTUS three_prime_utr 330895 330962 0.73 - . Parent=g53.t1 >*************** >*** 1908 **** >! chrI AUGUSTUS intron 331290 331338 0.97 - . Parent=g53.t1 >--- 1908 ---- >! chrI AUGUSTUS intron 331290 331338 0.98 - . Parent=g53.t1 >*************** >*** 1910,1912 **** >! chrI AUGUSTUS intron 331698 332558 1 - . Parent=g53.t1 >! chrI AUGUSTUS CDS 330963 331289 0.97 - 0 ID=g53.t1.cds;Parent=g53.t1 >! chrI AUGUSTUS CDS 331339 331464 1 - 0 ID=g53.t1.cds;Parent=g53.t1 >--- 1910,1912 ---- >! chrI AUGUSTUS intron 331698 332558 0.99 - . Parent=g53.t1 >! chrI AUGUSTUS CDS 330963 331289 0.99 - 0 ID=g53.t1.cds;Parent=g53.t1 >! chrI AUGUSTUS CDS 331339 331464 0.99 - 0 ID=g53.t1.cds;Parent=g53.t1 >*************** >*** 1914 **** >! chrI AUGUSTUS CDS 332559 332601 0.99 - 0 ID=g53.t1.cds;Parent=g53.t1 >--- 1914 ---- >! chrI AUGUSTUS CDS 332559 332601 0.98 - 0 ID=g53.t1.cds;Parent=g53.t1 >*************** >*** 1916 **** >! chrI AUGUSTUS five_prime_utr 332602 332646 0.39 - . Parent=g53.t1 >--- 1916 ---- >! chrI AUGUSTUS five_prime_utr 332602 332646 0.43 - . Parent=g53.t1 >*************** >*** 1933,1934 **** >! chrI AUGUSTUS gene 333227 338675 0.11 + . ID=g54 >! chrI AUGUSTUS transcript 333227 338675 0.11 + . ID=g54.t1;Parent=g54 >--- 1933,1934 ---- >! chrI AUGUSTUS gene 333227 338675 0.12 + . ID=g54 >! chrI AUGUSTUS transcript 333227 338675 0.12 + . ID=g54.t1;Parent=g54 >*************** >*** 1938,1939 **** >! chrI AUGUSTUS intron 333487 333766 0.93 + . Parent=g54.t1 >! chrI AUGUSTUS intron 333848 333898 0.89 + . Parent=g54.t1 >--- 1938,1939 ---- >! chrI AUGUSTUS intron 333487 333766 0.97 + . Parent=g54.t1 >! chrI AUGUSTUS intron 333848 333898 0.86 + . Parent=g54.t1 >*************** >*** 1941 **** >! chrI AUGUSTUS intron 334294 334640 0.9 + . Parent=g54.t1 >--- 1941 ---- >! chrI AUGUSTUS intron 334294 334640 0.86 + . Parent=g54.t1 >*************** >*** 1943 **** >! chrI AUGUSTUS intron 335767 337183 1 + . Parent=g54.t1 >--- 1943 ---- >! chrI AUGUSTUS intron 335767 337183 0.98 + . Parent=g54.t1 >*************** >*** 1945,1948 **** >! chrI AUGUSTUS CDS 333442 333486 0.72 + 0 ID=g54.t1.cds;Parent=g54.t1 >! chrI AUGUSTUS CDS 333767 333847 0.89 + 0 ID=g54.t1.cds;Parent=g54.t1 >! chrI AUGUSTUS CDS 333899 333994 0.87 + 0 ID=g54.t1.cds;Parent=g54.t1 >! chrI AUGUSTUS CDS 334161 334293 0.9 + 0 ID=g54.t1.cds;Parent=g54.t1 >--- 1945,1948 ---- >! chrI AUGUSTUS CDS 333442 333486 0.76 + 0 ID=g54.t1.cds;Parent=g54.t1 >! chrI AUGUSTUS CDS 333767 333847 0.86 + 0 ID=g54.t1.cds;Parent=g54.t1 >! chrI AUGUSTUS CDS 333899 333994 0.86 + 0 ID=g54.t1.cds;Parent=g54.t1 >! chrI AUGUSTUS CDS 334161 334293 0.86 + 0 ID=g54.t1.cds;Parent=g54.t1 >*************** >*** 1950 **** >! chrI AUGUSTUS CDS 335420 335766 1 + 0 ID=g54.t1.cds;Parent=g54.t1 >--- 1950 ---- >! chrI AUGUSTUS CDS 335420 335766 0.98 + 0 ID=g54.t1.cds;Parent=g54.t1 >*************** >*** 1952 **** >! chrI AUGUSTUS CDS 338365 338617 0.72 + 1 ID=g54.t1.cds;Parent=g54.t1 >--- 1952 ---- >! chrI AUGUSTUS CDS 338365 338617 0.73 + 1 ID=g54.t1.cds;Parent=g54.t1 >*************** >*** 1954 **** >! chrI AUGUSTUS three_prime_utr 338618 338675 0.6 + . Parent=g54.t1 >--- 1954 ---- >! chrI AUGUSTUS three_prime_utr 338618 338675 0.69 + . Parent=g54.t1 >*************** >*** 1974,1975 **** >! chrI AUGUSTUS gene 342357 350529 0.07 + . ID=g55 >! chrI AUGUSTUS transcript 342357 350529 0.07 + . ID=g55.t1;Parent=g55 >--- 1974,1975 ---- >! chrI AUGUSTUS gene 342357 350529 0.09 + . ID=g55 >! chrI AUGUSTUS transcript 342357 350529 0.09 + . ID=g55.t1;Parent=g55 >*************** >*** 1977 **** >! chrI AUGUSTUS five_prime_utr 342357 342383 0.93 + . Parent=g55.t1 >--- 1977 ---- >! chrI AUGUSTUS five_prime_utr 342357 342383 0.92 + . Parent=g55.t1 >*************** >*** 1979,1986 **** >! chrI AUGUSTUS intron 342409 342520 0.95 + . Parent=g55.t1 >! chrI AUGUSTUS intron 342707 345098 0.67 + . Parent=g55.t1 >! chrI AUGUSTUS intron 345225 345268 0.82 + . Parent=g55.t1 >! chrI AUGUSTUS intron 345386 346368 0.8 + . Parent=g55.t1 >! chrI AUGUSTUS intron 346471 346764 0.46 + . Parent=g55.t1 >! chrI AUGUSTUS intron 346893 347478 0.88 + . Parent=g55.t1 >! chrI AUGUSTUS intron 347745 347791 1 + . Parent=g55.t1 >! chrI AUGUSTUS intron 347947 347992 1 + . Parent=g55.t1 >--- 1979,1986 ---- >! chrI AUGUSTUS intron 342409 342520 0.99 + . Parent=g55.t1 >! chrI AUGUSTUS intron 342707 345098 0.65 + . Parent=g55.t1 >! chrI AUGUSTUS intron 345225 345268 0.72 + . Parent=g55.t1 >! chrI AUGUSTUS intron 345386 346368 0.72 + . Parent=g55.t1 >! chrI AUGUSTUS intron 346471 346764 0.53 + . Parent=g55.t1 >! chrI AUGUSTUS intron 346893 347478 0.92 + . Parent=g55.t1 >! chrI AUGUSTUS intron 347745 347791 0.98 + . Parent=g55.t1 >! chrI AUGUSTUS intron 347947 347992 0.98 + . Parent=g55.t1 >*************** >*** 1988,1994 **** >! chrI AUGUSTUS intron 349653 350066 0.99 + . Parent=g55.t1 >! chrI AUGUSTUS CDS 342384 342408 0.99 + 0 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 342521 342706 0.94 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 345099 345224 0.83 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 345269 345385 0.8 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 346369 346470 0.93 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 346765 346892 0.84 + 2 ID=g55.t1.cds;Parent=g55.t1 >--- 1988,1994 ---- >! chrI AUGUSTUS intron 349653 350066 0.98 + . Parent=g55.t1 >! chrI AUGUSTUS CDS 342384 342408 1 + 0 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 342521 342706 0.99 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 345099 345224 0.71 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 345269 345385 0.72 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 346369 346470 0.87 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 346765 346892 0.91 + 2 ID=g55.t1.cds;Parent=g55.t1 >*************** >*** 1996,1999 **** >! chrI AUGUSTUS CDS 347792 347946 1 + 1 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 347993 348305 0.85 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 349050 349652 0.9 + 1 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 350067 350469 0.99 + 1 ID=g55.t1.cds;Parent=g55.t1 >--- 1996,1999 ---- >! chrI AUGUSTUS CDS 347792 347946 0.98 + 1 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 347993 348305 0.83 + 2 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 349050 349652 0.95 + 1 ID=g55.t1.cds;Parent=g55.t1 >! chrI AUGUSTUS CDS 350067 350469 1 + 1 ID=g55.t1.cds;Parent=g55.t1 >*************** >*** 2001 **** >! chrI AUGUSTUS three_prime_utr 350470 350529 0.55 + . Parent=g55.t1 >--- 2001 ---- >! chrI AUGUSTUS three_prime_utr 350470 350529 0.61 + . Parent=g55.t1 >*************** >*** 2024,2025 **** >! chrI AUGUSTUS gene 357621 372979 0.06 + . ID=g56 >! chrI AUGUSTUS transcript 357621 372979 0.06 + . ID=g56.t1;Parent=g56 >--- 2024,2025 ---- >! chrI AUGUSTUS gene 357621 372979 0.09 + . ID=g56 >! chrI AUGUSTUS transcript 357621 372979 0.09 + . ID=g56.t1;Parent=g56 >*************** >*** 2027 **** >! chrI AUGUSTUS five_prime_utr 357621 357735 0.53 + . Parent=g56.t1 >--- 2027 ---- >! chrI AUGUSTUS five_prime_utr 357621 357735 0.56 + . Parent=g56.t1 >*************** >*** 2029,2030 **** >! chrI AUGUSTUS intron 357893 358418 0.27 + . Parent=g56.t1 >! chrI AUGUSTUS intron 358682 358893 0.89 + . Parent=g56.t1 >--- 2029,2030 ---- >! chrI AUGUSTUS intron 357893 358418 0.3 + . Parent=g56.t1 >! chrI AUGUSTUS intron 358682 358893 0.91 + . Parent=g56.t1 >*************** >*** 2033 **** >! chrI AUGUSTUS intron 360340 361566 0.96 + . Parent=g56.t1 >--- 2033 ---- >! chrI AUGUSTUS intron 360340 361566 0.97 + . Parent=g56.t1 >*************** >*** 2035 **** >! chrI AUGUSTUS intron 362991 363509 0.83 + . Parent=g56.t1 >--- 2035 ---- >! chrI AUGUSTUS intron 362991 363509 0.79 + . Parent=g56.t1 >*************** >*** 2037,2044 **** >! chrI AUGUSTUS intron 364404 364454 0.99 + . Parent=g56.t1 >! chrI AUGUSTUS intron 364562 364615 0.7 + . Parent=g56.t1 >! chrI AUGUSTUS intron 364688 365101 0.67 + . Parent=g56.t1 >! chrI AUGUSTUS intron 365216 368920 0.97 + . Parent=g56.t1 >! chrI AUGUSTUS intron 369060 369104 0.97 + . Parent=g56.t1 >! chrI AUGUSTUS intron 369264 369382 0.96 + . Parent=g56.t1 >! chrI AUGUSTUS intron 369474 369521 0.98 + . Parent=g56.t1 >! chrI AUGUSTUS intron 369653 369971 0.98 + . Parent=g56.t1 >--- 2037,2044 ---- >! chrI AUGUSTUS intron 364404 364454 1 + . Parent=g56.t1 >! chrI AUGUSTUS intron 364562 364615 0.65 + . Parent=g56.t1 >! chrI AUGUSTUS intron 364688 365101 0.64 + . Parent=g56.t1 >! chrI AUGUSTUS intron 365216 368920 0.98 + . Parent=g56.t1 >! chrI AUGUSTUS intron 369060 369104 1 + . Parent=g56.t1 >! chrI AUGUSTUS intron 369264 369382 0.98 + . Parent=g56.t1 >! chrI AUGUSTUS intron 369474 369521 1 + . Parent=g56.t1 >! chrI AUGUSTUS intron 369653 369971 1 + . Parent=g56.t1 >*************** >*** 2046,2049 **** >! chrI AUGUSTUS intron 371197 371247 1 + . Parent=g56.t1 >! chrI AUGUSTUS intron 371419 372674 0.98 + . Parent=g56.t1 >! chrI AUGUSTUS CDS 357736 357892 0.28 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 358419 358681 0.89 + 2 ID=g56.t1.cds;Parent=g56.t1 >--- 2046,2049 ---- >! chrI AUGUSTUS intron 371197 371247 0.99 + . Parent=g56.t1 >! chrI AUGUSTUS intron 371419 372674 0.99 + . Parent=g56.t1 >! chrI AUGUSTUS CDS 357736 357892 0.3 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 358419 358681 0.91 + 2 ID=g56.t1.cds;Parent=g56.t1 >*************** >*** 2053 **** >! chrI AUGUSTUS CDS 361567 361790 0.96 + 0 ID=g56.t1.cds;Parent=g56.t1 >--- 2053 ---- >! chrI AUGUSTUS CDS 361567 361790 0.97 + 0 ID=g56.t1.cds;Parent=g56.t1 >*************** >*** 2056,2063 **** >! chrI AUGUSTUS CDS 364257 364403 0.99 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 364455 364561 0.99 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 364616 364687 0.69 + 1 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 365102 365215 0.97 + 1 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 368921 369059 0.97 + 1 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 369105 369263 0.93 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 369383 369473 0.98 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 369522 369652 0.98 + 2 ID=g56.t1.cds;Parent=g56.t1 >--- 2056,2063 ---- >! chrI AUGUSTUS CDS 364257 364403 1 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 364455 364561 1 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 364616 364687 0.65 + 1 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 365102 365215 0.98 + 1 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 368921 369059 1 + 1 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 369105 369263 0.98 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 369383 369473 1 + 0 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 369522 369652 1 + 2 ID=g56.t1.cds;Parent=g56.t1 >*************** >*** 2066,2067 **** >! chrI AUGUSTUS CDS 371248 371418 1 + 1 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 372675 372930 0.98 + 1 ID=g56.t1.cds;Parent=g56.t1 >--- 2066,2067 ---- >! chrI AUGUSTUS CDS 371248 371418 0.98 + 1 ID=g56.t1.cds;Parent=g56.t1 >! chrI AUGUSTUS CDS 372675 372930 1 + 1 ID=g56.t1.cds;Parent=g56.t1 >*************** >*** 2069 **** >! chrI AUGUSTUS three_prime_utr 372931 372979 0.49 + . Parent=g56.t1 >--- 2069 ---- >! chrI AUGUSTUS three_prime_utr 372931 372979 0.55 + . Parent=g56.t1 >*************** >*** 2094,2095 **** >! chrI AUGUSTUS gene 375111 401510 0.16 - . ID=g57 >! chrI AUGUSTUS transcript 375111 401510 0.16 - . ID=g57.t1;Parent=g57 >--- 2094,2095 ---- >! chrI AUGUSTUS gene 375111 401510 0.11 - . ID=g57 >! chrI AUGUSTUS transcript 375111 401510 0.11 - . ID=g57.t1;Parent=g57 >*************** >*** 2097,2098 **** >! chrI AUGUSTUS three_prime_utr 375111 375481 0.38 - . Parent=g57.t1 >! chrI AUGUSTUS three_prime_utr 377080 377089 0.52 - . Parent=g57.t1 >--- 2097,2098 ---- >! chrI AUGUSTUS three_prime_utr 375111 375481 0.43 - . Parent=g57.t1 >! chrI AUGUSTUS three_prime_utr 377080 377089 0.51 - . Parent=g57.t1 >*************** >*** 2100,2101 **** >! chrI AUGUSTUS intron 377584 377690 0.87 - . Parent=g57.t1 >! chrI AUGUSTUS intron 377778 379389 0.88 - . Parent=g57.t1 >--- 2100,2101 ---- >! chrI AUGUSTUS intron 377584 377690 0.76 - . Parent=g57.t1 >! chrI AUGUSTUS intron 377778 379389 0.79 - . Parent=g57.t1 >*************** >*** 2103,2104 **** >! chrI AUGUSTUS intron 379707 381013 0.83 - . Parent=g57.t1 >! chrI AUGUSTUS intron 381855 384596 0.91 - . Parent=g57.t1 >--- 2103,2104 ---- >! chrI AUGUSTUS intron 379707 381013 0.8 - . Parent=g57.t1 >! chrI AUGUSTUS intron 381855 384596 0.96 - . Parent=g57.t1 >*************** >*** 2107,2109 **** >! chrI AUGUSTUS intron 389961 390884 0.9 - . Parent=g57.t1 >! chrI AUGUSTUS intron 391162 392472 0.96 - . Parent=g57.t1 >! chrI AUGUSTUS intron 392710 396104 1 - . Parent=g57.t1 >--- 2107,2109 ---- >! chrI AUGUSTUS intron 389961 390884 0.92 - . Parent=g57.t1 >! chrI AUGUSTUS intron 391162 392472 0.93 - . Parent=g57.t1 >! chrI AUGUSTUS intron 392710 396104 0.96 - . Parent=g57.t1 >*************** >*** 2118,2123 **** >! chrI AUGUSTUS CDS 377090 377583 0.98 - 2 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 377691 377777 0.86 - 2 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 379390 379508 0.98 - 1 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 379560 379706 0.89 - 1 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 381014 381854 0.82 - 2 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 384597 384992 0.97 - 2 ID=g57.t1.cds;Parent=g57.t1 >--- 2118,2123 ---- >! chrI AUGUSTUS CDS 377090 377583 0.95 - 2 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 377691 377777 0.76 - 2 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 379390 379508 0.97 - 1 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 379560 379706 0.97 - 1 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 381014 381854 0.78 - 2 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 384597 384992 0.98 - 2 ID=g57.t1.cds;Parent=g57.t1 >*************** >*** 2125,2128 **** >! chrI AUGUSTUS CDS 389884 389960 0.9 - 2 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 390885 391161 0.91 - 0 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 392473 392709 0.96 - 0 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 396105 396251 1 - 0 ID=g57.t1.cds;Parent=g57.t1 >--- 2125,2128 ---- >! chrI AUGUSTUS CDS 389884 389960 0.92 - 2 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 390885 391161 0.92 - 0 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 392473 392709 0.93 - 0 ID=g57.t1.cds;Parent=g57.t1 >! chrI AUGUSTUS CDS 396105 396251 0.96 - 0 ID=g57.t1.cds;Parent=g57.t1 >*************** >*** 2138 **** >! chrI AUGUSTUS five_prime_utr 401490 401510 0.73 - . Parent=g57.t1 >--- 2138 ---- >! chrI AUGUSTUS five_prime_utr 401490 401510 0.75 - . Parent=g57.t1 >*************** >*** 2169,2170 **** >! chrI AUGUSTUS gene 402191 409988 0.16 + . ID=g58 >! chrI AUGUSTUS transcript 402191 409988 0.16 + . ID=g58.t1;Parent=g58 >--- 2169,2170 ---- >! chrI AUGUSTUS gene 402191 409988 0.2 + . ID=g58 >! chrI AUGUSTUS transcript 402191 409988 0.2 + . ID=g58.t1;Parent=g58 >*************** >*** 2172 **** >! chrI AUGUSTUS five_prime_utr 402191 402235 0.55 + . Parent=g58.t1 >--- 2172 ---- >! chrI AUGUSTUS five_prime_utr 402191 402235 0.57 + . Parent=g58.t1 >*************** >*** 2176 **** >! chrI AUGUSTUS intron 403440 404645 0.99 + . Parent=g58.t1 >--- 2176 ---- >! chrI AUGUSTUS intron 403440 404645 1 + . Parent=g58.t1 >*************** >*** 2179,2181 **** >! chrI AUGUSTUS intron 408078 408877 0.52 + . Parent=g58.t1 >! chrI AUGUSTUS intron 409022 409282 0.61 + . Parent=g58.t1 >! chrI AUGUSTUS CDS 402236 402325 0.96 + 0 ID=g58.t1.cds;Parent=g58.t1 >--- 2179,2181 ---- >! chrI AUGUSTUS intron 408078 408877 0.63 + . Parent=g58.t1 >! chrI AUGUSTUS intron 409022 409282 0.69 + . Parent=g58.t1 >! chrI AUGUSTUS CDS 402236 402325 0.94 + 0 ID=g58.t1.cds;Parent=g58.t1 >*************** >*** 2183,2184 **** >! chrI AUGUSTUS CDS 403346 403439 0.99 + 2 ID=g58.t1.cds;Parent=g58.t1 >! chrI AUGUSTUS CDS 404646 404970 0.98 + 1 ID=g58.t1.cds;Parent=g58.t1 >--- 2183,2184 ---- >! chrI AUGUSTUS CDS 403346 403439 1 + 2 ID=g58.t1.cds;Parent=g58.t1 >! chrI AUGUSTUS CDS 404646 404970 0.99 + 1 ID=g58.t1.cds;Parent=g58.t1 >*************** >*** 2186,2187 **** >! chrI AUGUSTUS CDS 407823 408077 0.99 + 1 ID=g58.t1.cds;Parent=g58.t1 >! chrI AUGUSTUS CDS 408878 409021 0.52 + 1 ID=g58.t1.cds;Parent=g58.t1 >--- 2186,2187 ---- >! chrI AUGUSTUS CDS 407823 408077 0.98 + 1 ID=g58.t1.cds;Parent=g58.t1 >! chrI AUGUSTUS CDS 408878 409021 0.63 + 1 ID=g58.t1.cds;Parent=g58.t1 >*************** >*** 2190 **** >! chrI AUGUSTUS three_prime_utr 409854 409988 0.58 + . Parent=g58.t1 >--- 2190 ---- >! chrI AUGUSTUS three_prime_utr 409854 409988 0.54 + . Parent=g58.t1 >*************** >*** 2216 **** >! chrI AUGUSTUS five_prime_utr 415091 415133 0.66 + . Parent=g59.t1 >--- 2216 ---- >! chrI AUGUSTUS five_prime_utr 415091 415133 0.7 + . Parent=g59.t1 >*************** >*** 2218,2223 **** >! chrI AUGUSTUS intron 415281 415842 0.84 + . Parent=g59.t1 >! chrI AUGUSTUS intron 415951 417182 0.76 + . Parent=g59.t1 >! chrI AUGUSTUS intron 417576 418371 0.85 + . Parent=g59.t1 >! chrI AUGUSTUS CDS 415134 415280 0.9 + 0 ID=g59.t1.cds;Parent=g59.t1 >! chrI AUGUSTUS CDS 415843 415950 0.76 + 0 ID=g59.t1.cds;Parent=g59.t1 >! chrI AUGUSTUS CDS 417183 417575 0.85 + 0 ID=g59.t1.cds;Parent=g59.t1 >--- 2218,2223 ---- >! chrI AUGUSTUS intron 415281 415842 0.88 + . Parent=g59.t1 >! chrI AUGUSTUS intron 415951 417182 0.82 + . Parent=g59.t1 >! chrI AUGUSTUS intron 417576 418371 0.87 + . Parent=g59.t1 >! chrI AUGUSTUS CDS 415134 415280 0.86 + 0 ID=g59.t1.cds;Parent=g59.t1 >! chrI AUGUSTUS CDS 415843 415950 0.83 + 0 ID=g59.t1.cds;Parent=g59.t1 >! chrI AUGUSTUS CDS 417183 417575 0.8 + 0 ID=g59.t1.cds;Parent=g59.t1 >*************** >*** 2226 **** >! chrI AUGUSTUS three_prime_utr 418459 418516 0.78 + . Parent=g59.t1 >--- 2226 ---- >! chrI AUGUSTUS three_prime_utr 418459 418516 0.76 + . Parent=g59.t1 >*************** >*** 2244,2245 **** >! chrI AUGUSTUS gene 418562 420380 0.21 - . ID=g60 >! chrI AUGUSTUS transcript 418562 420380 0.21 - . ID=g60.t1;Parent=g60 >--- 2244,2245 ---- >! chrI AUGUSTUS gene 418562 420380 0.29 - . ID=g60 >! chrI AUGUSTUS transcript 418562 420380 0.29 - . ID=g60.t1;Parent=g60 >*************** >*** 2247 **** >! chrI AUGUSTUS three_prime_utr 418562 418597 0.49 - . Parent=g60.t1 >--- 2247 ---- >! chrI AUGUSTUS three_prime_utr 418562 418597 0.59 - . Parent=g60.t1 >*************** >*** 2255 **** >! chrI AUGUSTUS five_prime_utr 420348 420380 0.37 - . Parent=g60.t1 >--- 2255 ---- >! chrI AUGUSTUS five_prime_utr 420348 420380 0.45 - . Parent=g60.t1 >*************** >*** 2273,2274 **** >! chrI AUGUSTUS gene 420563 421740 0.43 - . ID=g61 >! chrI AUGUSTUS transcript 420563 421740 0.43 - . ID=g61.t1;Parent=g61 >--- 2273,2274 ---- >! chrI AUGUSTUS gene 420563 421740 0.41 - . ID=g61 >! chrI AUGUSTUS transcript 420563 421740 0.41 - . ID=g61.t1;Parent=g61 >*************** >*** 2276 **** >! chrI AUGUSTUS three_prime_utr 420563 420962 0.77 - . Parent=g61.t1 >--- 2276 ---- >! chrI AUGUSTUS three_prime_utr 420563 420962 0.74 - . Parent=g61.t1 >*************** >*** 2279 **** >! chrI AUGUSTUS intron 421607 421664 0.96 - . Parent=g61.t1 >--- 2279 ---- >! chrI AUGUSTUS intron 421607 421664 1 - . Parent=g61.t1 >*************** >*** 2282 **** >! chrI AUGUSTUS CDS 421665 421698 0.85 - 0 ID=g61.t1.cds;Parent=g61.t1 >--- 2282 ---- >! chrI AUGUSTUS CDS 421665 421698 0.91 - 0 ID=g61.t1.cds;Parent=g61.t1 >*************** >*** 2284 **** >! chrI AUGUSTUS five_prime_utr 421699 421740 0.57 - . Parent=g61.t1 >--- 2284 ---- >! chrI AUGUSTUS five_prime_utr 421699 421740 0.54 - . Parent=g61.t1 >*************** >*** 2301,2302 **** >! chrI AUGUSTUS gene 422336 425140 0.51 - . ID=g62 >! chrI AUGUSTUS transcript 422336 425140 0.51 - . ID=g62.t1;Parent=g62 >--- 2301,2302 ---- >! chrI AUGUSTUS gene 422336 425140 0.49 - . ID=g62 >! chrI AUGUSTUS transcript 422336 425140 0.49 - . ID=g62.t1;Parent=g62 >*************** >*** 2304 **** >! chrI AUGUSTUS three_prime_utr 422336 422405 0.82 - . Parent=g62.t1 >--- 2304 ---- >! chrI AUGUSTUS three_prime_utr 422336 422405 0.79 - . Parent=g62.t1 >*************** >*** 2316 **** >! chrI AUGUSTUS CDS 425009 425074 0.98 - 0 ID=g62.t1.cds;Parent=g62.t1 >--- 2316 ---- >! chrI AUGUSTUS CDS 425009 425074 0.97 - 0 ID=g62.t1.cds;Parent=g62.t1 >*************** >*** 2318 **** >! chrI AUGUSTUS five_prime_utr 425075 425140 0.59 - . Parent=g62.t1 >--- 2318 ---- >! chrI AUGUSTUS five_prime_utr 425075 425140 0.63 - . Parent=g62.t1 >*************** >*** 2337,2338 **** >! chrI AUGUSTUS gene 428991 429566 0.24 + . ID=g63 >! chrI AUGUSTUS transcript 428991 429566 0.24 + . ID=g63.t1;Parent=g63 >--- 2337,2338 ---- >! chrI AUGUSTUS gene 428991 429566 0.19 + . ID=g63 >! chrI AUGUSTUS transcript 428991 429566 0.19 + . ID=g63.t1;Parent=g63 >*************** >*** 2340 **** >! chrI AUGUSTUS five_prime_utr 428991 429015 0.3 + . Parent=g63.t1 >--- 2340 ---- >! chrI AUGUSTUS five_prime_utr 428991 429015 0.23 + . Parent=g63.t1 >*************** >*** 2342 **** >! chrI AUGUSTUS CDS 429016 429285 0.39 + 0 ID=g63.t1.cds;Parent=g63.t1 >--- 2342 ---- >! chrI AUGUSTUS CDS 429016 429285 0.29 + 0 ID=g63.t1.cds;Parent=g63.t1 >*************** >*** 2344 **** >! chrI AUGUSTUS three_prime_utr 429286 429566 0.62 + . Parent=g63.t1 >--- 2344 ---- >! chrI AUGUSTUS three_prime_utr 429286 429566 0.54 + . Parent=g63.t1 >*************** >*** 2359,2360 **** >! chrI AUGUSTUS gene 429675 433660 0.14 - . ID=g64 >! chrI AUGUSTUS transcript 429675 433660 0.14 - . ID=g64.t1;Parent=g64 >--- 2359,2360 ---- >! chrI AUGUSTUS gene 429675 433660 0.12 - . ID=g64 >! chrI AUGUSTUS transcript 429675 433660 0.12 - . ID=g64.t1;Parent=g64 >*************** >*** 2364,2365 **** >! chrI AUGUSTUS intron 429824 429951 0.95 - . Parent=g64.t1 >! chrI AUGUSTUS intron 430138 431415 0.82 - . Parent=g64.t1 >--- 2364,2365 ---- >! chrI AUGUSTUS intron 429824 429951 0.97 - . Parent=g64.t1 >! chrI AUGUSTUS intron 430138 431415 0.84 - . Parent=g64.t1 >*************** >*** 2367 **** >! chrI AUGUSTUS intron 432103 432714 0.37 - . Parent=g64.t1 >--- 2367 ---- >! chrI AUGUSTUS intron 432103 432714 0.5 - . Parent=g64.t1 >*************** >*** 2373 **** >! chrI AUGUSTUS CDS 429952 430137 0.93 - 0 ID=g64.t1.cds;Parent=g64.t1 >--- 2373 ---- >! chrI AUGUSTUS CDS 429952 430137 0.97 - 0 ID=g64.t1.cds;Parent=g64.t1 >*************** >*** 2375,2376 **** >! chrI AUGUSTUS CDS 431798 432102 0.36 - 1 ID=g64.t1.cds;Parent=g64.t1 >! chrI AUGUSTUS CDS 432715 432898 0.37 - 2 ID=g64.t1.cds;Parent=g64.t1 >--- 2375,2376 ---- >! chrI AUGUSTUS CDS 431798 432102 0.5 - 1 ID=g64.t1.cds;Parent=g64.t1 >! chrI AUGUSTUS CDS 432715 432898 0.5 - 2 ID=g64.t1.cds;Parent=g64.t1 >*************** >*** 2380 **** >! chrI AUGUSTUS CDS 433532 433610 0.99 - 0 ID=g64.t1.cds;Parent=g64.t1 >--- 2380 ---- >! chrI AUGUSTUS CDS 433532 433610 1 - 0 ID=g64.t1.cds;Parent=g64.t1 >*************** >*** 2382 **** >! chrI AUGUSTUS five_prime_utr 433611 433660 0.46 - . Parent=g64.t1 >--- 2382 ---- >! chrI AUGUSTUS five_prime_utr 433611 433660 0.41 - . Parent=g64.t1 >*************** >*** 2402,2403 **** >! chrI AUGUSTUS gene 433901 435695 0.26 + . ID=g65 >! chrI AUGUSTUS transcript 433901 435695 0.26 + . ID=g65.t1;Parent=g65 >--- 2402,2403 ---- >! chrI AUGUSTUS gene 433901 435695 0.28 + . ID=g65 >! chrI AUGUSTUS transcript 433901 435695 0.28 + . ID=g65.t1;Parent=g65 >*************** >*** 2405 **** >! chrI AUGUSTUS five_prime_utr 433901 434011 0.39 + . Parent=g65.t1 >--- 2405 ---- >! chrI AUGUSTUS five_prime_utr 433901 434011 0.42 + . Parent=g65.t1 >*************** >*** 2407 **** >! chrI AUGUSTUS intron 434224 434280 0.96 + . Parent=g65.t1 >--- 2407 ---- >! chrI AUGUSTUS intron 434224 434280 0.94 + . Parent=g65.t1 >*************** >*** 2411 **** >! chrI AUGUSTUS CDS 434012 434223 0.96 + 0 ID=g65.t1.cds;Parent=g65.t1 >--- 2411 ---- >! chrI AUGUSTUS CDS 434012 434223 0.93 + 0 ID=g65.t1.cds;Parent=g65.t1 >*************** >*** 2417 **** >! chrI AUGUSTUS three_prime_utr 435577 435695 0.64 + . Parent=g65.t1 >--- 2417 ---- >! chrI AUGUSTUS three_prime_utr 435577 435695 0.65 + . Parent=g65.t1 >*************** >*** 2435,2436 **** >! chrI AUGUSTUS gene 439501 439915 0.01 + . ID=g66 >! chrI AUGUSTUS transcript 439501 439915 0.01 + . ID=g66.t1;Parent=g66 >--- 2435,2436 ---- >! chrI AUGUSTUS gene 439501 439915 0.03 + . ID=g66 >! chrI AUGUSTUS transcript 439501 439915 0.03 + . ID=g66.t1;Parent=g66 >*************** >*** 2438 **** >! chrI AUGUSTUS five_prime_utr 439501 439610 0.16 + . Parent=g66.t1 >--- 2438 ---- >! chrI AUGUSTUS five_prime_utr 439501 439610 0.24 + . Parent=g66.t1 >*************** >*** 2440 **** >! chrI AUGUSTUS CDS 439611 439874 0.35 + 0 ID=g66.t1.cds;Parent=g66.t1 >--- 2440 ---- >! chrI AUGUSTUS CDS 439611 439874 0.47 + 0 ID=g66.t1.cds;Parent=g66.t1 >*************** >*** 2442 **** >! chrI AUGUSTUS three_prime_utr 439875 439915 0.14 + . Parent=g66.t1 >--- 2442 ---- >! chrI AUGUSTUS three_prime_utr 439875 439915 0.13 + . Parent=g66.t1 >*************** >*** 2457,2458 **** >! chrI AUGUSTUS gene 442231 445001 0.1 + . ID=g67 >! chrI AUGUSTUS transcript 442231 445001 0.1 + . ID=g67.t1;Parent=g67 >--- 2457,2458 ---- >! chrI AUGUSTUS gene 442231 445001 0.06 + . ID=g67 >! chrI AUGUSTUS transcript 442231 445001 0.06 + . ID=g67.t1;Parent=g67 >*************** >*** 2460 **** >! chrI AUGUSTUS five_prime_utr 442231 442271 0.44 + . Parent=g67.t1 >--- 2460 ---- >! chrI AUGUSTUS five_prime_utr 442231 442271 0.43 + . Parent=g67.t1 >*************** >*** 2462,2466 **** >! chrI AUGUSTUS intron 442362 442667 0.97 + . Parent=g67.t1 >! chrI AUGUSTUS intron 442933 444732 0.55 + . Parent=g67.t1 >! chrI AUGUSTUS CDS 442272 442361 0.83 + 0 ID=g67.t1.cds;Parent=g67.t1 >! chrI AUGUSTUS CDS 442668 442932 0.77 + 0 ID=g67.t1.cds;Parent=g67.t1 >! chrI AUGUSTUS CDS 444733 444782 0.55 + 2 ID=g67.t1.cds;Parent=g67.t1 >--- 2462,2466 ---- >! chrI AUGUSTUS intron 442362 442667 0.96 + . Parent=g67.t1 >! chrI AUGUSTUS intron 442933 444732 0.5 + . Parent=g67.t1 >! chrI AUGUSTUS CDS 442272 442361 0.9 + 0 ID=g67.t1.cds;Parent=g67.t1 >! chrI AUGUSTUS CDS 442668 442932 0.75 + 0 ID=g67.t1.cds;Parent=g67.t1 >! chrI AUGUSTUS CDS 444733 444782 0.5 + 2 ID=g67.t1.cds;Parent=g67.t1 >*************** >*** 2468 **** >! chrI AUGUSTUS three_prime_utr 444783 445001 0.26 + . Parent=g67.t1 >--- 2468 ---- >! chrI AUGUSTUS three_prime_utr 444783 445001 0.18 + . Parent=g67.t1 >*************** >*** 2484,2485 **** >! chrI AUGUSTUS gene 447151 448414 0.16 + . ID=g68 >! chrI AUGUSTUS transcript 447151 448414 0.16 + . ID=g68.t1;Parent=g68 >--- 2484,2485 ---- >! chrI AUGUSTUS gene 447151 448414 0.29 + . ID=g68 >! chrI AUGUSTUS transcript 447151 448414 0.29 + . ID=g68.t1;Parent=g68 >*************** >*** 2487 **** >! chrI AUGUSTUS five_prime_utr 447151 447315 0.24 + . Parent=g68.t1 >--- 2487 ---- >! chrI AUGUSTUS five_prime_utr 447151 447315 0.34 + . Parent=g68.t1 >*************** >*** 2489,2490 **** >! chrI AUGUSTUS intron 447481 447585 0.9 + . Parent=g68.t1 >! chrI AUGUSTUS intron 447694 447836 0.65 + . Parent=g68.t1 >--- 2489,2490 ---- >! chrI AUGUSTUS intron 447481 447585 0.89 + . Parent=g68.t1 >! chrI AUGUSTUS intron 447694 447836 0.69 + . Parent=g68.t1 >*************** >*** 2492,2494 **** >! chrI AUGUSTUS CDS 447316 447480 0.7 + 0 ID=g68.t1.cds;Parent=g68.t1 >! chrI AUGUSTUS CDS 447586 447693 0.62 + 0 ID=g68.t1.cds;Parent=g68.t1 >! chrI AUGUSTUS CDS 447837 447998 0.94 + 0 ID=g68.t1.cds;Parent=g68.t1 >--- 2492,2494 ---- >! chrI AUGUSTUS CDS 447316 447480 0.73 + 0 ID=g68.t1.cds;Parent=g68.t1 >! chrI AUGUSTUS CDS 447586 447693 0.66 + 0 ID=g68.t1.cds;Parent=g68.t1 >! chrI AUGUSTUS CDS 447837 447998 0.96 + 0 ID=g68.t1.cds;Parent=g68.t1 >*************** >*** 2497 **** >! chrI AUGUSTUS three_prime_utr 448369 448414 0.98 + . Parent=g68.t1 >--- 2497 ---- >! chrI AUGUSTUS three_prime_utr 448369 448414 0.97 + . Parent=g68.t1 >*************** >*** 2516 **** >! chrI AUGUSTUS three_prime_utr 449300 449414 0.61 - . Parent=g69.t1 >--- 2516 ---- >! chrI AUGUSTUS three_prime_utr 449300 449414 0.56 - . Parent=g69.t1 >*************** >*** 2522,2524 **** >! chrI AUGUSTUS intron 450356 450474 0.21 - . Parent=g69.t1 >! chrI AUGUSTUS intron 450576 450619 0.79 - . Parent=g69.t1 >! chrI AUGUSTUS intron 451123 451284 0.42 - . Parent=g69.t1 >--- 2522,2524 ---- >! chrI AUGUSTUS intron 450356 450474 0.25 - . Parent=g69.t1 >! chrI AUGUSTUS intron 450576 450619 0.87 - . Parent=g69.t1 >! chrI AUGUSTUS intron 451123 451284 0.49 - . Parent=g69.t1 >*************** >*** 2528,2530 **** >! chrI AUGUSTUS CDS 449930 450041 1 - 0 ID=g69.t1.cds;Parent=g69.t1 >! chrI AUGUSTUS CDS 450140 450355 0.4 - 0 ID=g69.t1.cds;Parent=g69.t1 >! chrI AUGUSTUS CDS 450475 450575 0.35 - 2 ID=g69.t1.cds;Parent=g69.t1 >--- 2528,2530 ---- >! chrI AUGUSTUS CDS 449930 450041 0.99 - 0 ID=g69.t1.cds;Parent=g69.t1 >! chrI AUGUSTUS CDS 450140 450355 0.5 - 0 ID=g69.t1.cds;Parent=g69.t1 >! chrI AUGUSTUS CDS 450475 450575 0.47 - 2 ID=g69.t1.cds;Parent=g69.t1 >*************** >*** 2532 **** >! chrI AUGUSTUS CDS 451285 451367 0.52 - 0 ID=g69.t1.cds;Parent=g69.t1 >--- 2532 ---- >! chrI AUGUSTUS CDS 451285 451367 0.58 - 0 ID=g69.t1.cds;Parent=g69.t1 >*************** >*** 2534 **** >! chrI AUGUSTUS five_prime_utr 451368 451650 0.18 - . Parent=g69.t1 >--- 2534 ---- >! chrI AUGUSTUS five_prime_utr 451368 451650 0.22 - . Parent=g69.t1 >*************** >*** 2556 **** >! chrI AUGUSTUS three_prime_utr 451898 451974 0.53 - . Parent=g70.t1 >--- 2556 ---- >! chrI AUGUSTUS three_prime_utr 451898 451974 0.49 - . Parent=g70.t1 >*************** >*** 2559,2561 **** >! chrI AUGUSTUS intron 453354 454658 0.93 - . Parent=g70.t1 >! chrI AUGUSTUS intron 454896 455019 0.93 - . Parent=g70.t1 >! chrI AUGUSTUS intron 455094 456054 1 - . Parent=g70.t1 >--- 2559,2561 ---- >! chrI AUGUSTUS intron 453354 454658 0.92 - . Parent=g70.t1 >! chrI AUGUSTUS intron 454896 455019 0.92 - . Parent=g70.t1 >! chrI AUGUSTUS intron 455094 456054 0.99 - . Parent=g70.t1 >*************** >*** 2564 **** >! chrI AUGUSTUS CDS 454659 454895 0.93 - 0 ID=g70.t1.cds;Parent=g70.t1 >--- 2564 ---- >! chrI AUGUSTUS CDS 454659 454895 0.92 - 0 ID=g70.t1.cds;Parent=g70.t1 >*************** >*** 2566 **** >! chrI AUGUSTUS CDS 456055 456445 0.56 - 0 ID=g70.t1.cds;Parent=g70.t1 >--- 2566 ---- >! chrI AUGUSTUS CDS 456055 456445 0.48 - 0 ID=g70.t1.cds;Parent=g70.t1 >*************** >*** 2568 **** >! chrI AUGUSTUS five_prime_utr 456446 456570 0.2 - . Parent=g70.t1 >--- 2568 ---- >! chrI AUGUSTUS five_prime_utr 456446 456570 0.23 - . Parent=g70.t1 >*************** >*** 2587,2588 **** >! chrI AUGUSTUS gene 468788 482350 0.32 - . ID=g71 >! chrI AUGUSTUS transcript 468788 482350 0.32 - . ID=g71.t1;Parent=g71 >--- 2587,2588 ---- >! chrI AUGUSTUS gene 468788 482350 0.38 - . ID=g71 >! chrI AUGUSTUS transcript 468788 482350 0.38 - . ID=g71.t1;Parent=g71 >*************** >*** 2590 **** >! chrI AUGUSTUS three_prime_utr 468788 468965 0.86 - . Parent=g71.t1 >--- 2590 ---- >! chrI AUGUSTUS three_prime_utr 468788 468965 0.9 - . Parent=g71.t1 >*************** >*** 2593,2594 **** >! chrI AUGUSTUS intron 471064 472449 0.47 - . Parent=g71.t1 >! chrI AUGUSTUS intron 472506 473311 0.77 - . Parent=g71.t1 >--- 2593,2594 ---- >! chrI AUGUSTUS intron 471064 472449 0.5 - . Parent=g71.t1 >! chrI AUGUSTUS intron 472506 473311 0.73 - . Parent=g71.t1 >*************** >*** 2597,2598 **** >! chrI AUGUSTUS intron 478802 480304 0.99 - . Parent=g71.t1 >! chrI AUGUSTUS intron 480570 482217 0.98 - . Parent=g71.t1 >--- 2597,2598 ---- >! chrI AUGUSTUS intron 478802 480304 0.96 - . Parent=g71.t1 >! chrI AUGUSTUS intron 480570 482217 1 - . Parent=g71.t1 >*************** >*** 2601,2602 **** >! chrI AUGUSTUS CDS 472450 472505 0.63 - 0 ID=g71.t1.cds;Parent=g71.t1 >! chrI AUGUSTUS CDS 473312 473662 0.99 - 0 ID=g71.t1.cds;Parent=g71.t1 >--- 2601,2602 ---- >! chrI AUGUSTUS CDS 472450 472505 0.56 - 0 ID=g71.t1.cds;Parent=g71.t1 >! chrI AUGUSTUS CDS 473312 473662 1 - 0 ID=g71.t1.cds;Parent=g71.t1 >*************** >*** 2604,2606 **** >! chrI AUGUSTUS CDS 478229 478801 0.99 - 2 ID=g71.t1.cds;Parent=g71.t1 >! chrI AUGUSTUS CDS 480305 480569 0.98 - 0 ID=g71.t1.cds;Parent=g71.t1 >! chrI AUGUSTUS CDS 482218 482274 0.91 - 0 ID=g71.t1.cds;Parent=g71.t1 >--- 2604,2606 ---- >! chrI AUGUSTUS CDS 478229 478801 0.96 - 2 ID=g71.t1.cds;Parent=g71.t1 >! chrI AUGUSTUS CDS 480305 480569 1 - 0 ID=g71.t1.cds;Parent=g71.t1 >! chrI AUGUSTUS CDS 482218 482274 0.95 - 0 ID=g71.t1.cds;Parent=g71.t1 >*************** >*** 2608 **** >! chrI AUGUSTUS five_prime_utr 482275 482350 0.74 - . Parent=g71.t1 >--- 2608 ---- >! chrI AUGUSTUS five_prime_utr 482275 482350 0.82 - . Parent=g71.t1 >*************** >*** 2631,2632 **** >! chrI AUGUSTUS gene 483181 483729 0.45 + . ID=g72 >! chrI AUGUSTUS transcript 483181 483729 0.45 + . ID=g72.t1;Parent=g72 >--- 2631,2632 ---- >! chrI AUGUSTUS gene 483181 483729 0.49 + . ID=g72 >! chrI AUGUSTUS transcript 483181 483729 0.49 + . ID=g72.t1;Parent=g72 >*************** >*** 2634 **** >! chrI AUGUSTUS five_prime_utr 483181 483203 0.46 + . Parent=g72.t1 >--- 2634 ---- >! chrI AUGUSTUS five_prime_utr 483181 483203 0.49 + . Parent=g72.t1 >*************** >*** 2636 **** >! chrI AUGUSTUS CDS 483204 483653 0.95 + 0 ID=g72.t1.cds;Parent=g72.t1 >--- 2636 ---- >! chrI AUGUSTUS CDS 483204 483653 0.93 + 0 ID=g72.t1.cds;Parent=g72.t1 >*************** >*** 2653,2654 **** >! chrI AUGUSTUS gene 485801 497384 0.09 + . ID=g73 >! chrI AUGUSTUS transcript 485801 497384 0.09 + . ID=g73.t1;Parent=g73 >--- 2653,2654 ---- >! chrI AUGUSTUS gene 485801 497384 0.15 + . ID=g73 >! chrI AUGUSTUS transcript 485801 497384 0.15 + . ID=g73.t1;Parent=g73 >*************** >*** 2656 **** >! chrI AUGUSTUS five_prime_utr 485801 485869 0.93 + . Parent=g73.t1 >--- 2656 ---- >! chrI AUGUSTUS five_prime_utr 485801 485869 0.89 + . Parent=g73.t1 >*************** >*** 2660 **** >! chrI AUGUSTUS intron 488568 489976 0.16 + . Parent=g73.t1 >--- 2660 ---- >! chrI AUGUSTUS intron 488568 489976 0.21 + . Parent=g73.t1 >*************** >*** 2662,2665 **** >! chrI AUGUSTUS intron 490859 492608 0.96 + . Parent=g73.t1 >! chrI AUGUSTUS intron 492969 494936 0.89 + . Parent=g73.t1 >! chrI AUGUSTUS intron 495300 496668 0.8 + . Parent=g73.t1 >! chrI AUGUSTUS CDS 485870 486005 1 + 0 ID=g73.t1.cds;Parent=g73.t1 >--- 2662,2665 ---- >! chrI AUGUSTUS intron 490859 492608 0.98 + . Parent=g73.t1 >! chrI AUGUSTUS intron 492969 494936 0.88 + . Parent=g73.t1 >! chrI AUGUSTUS intron 495300 496668 0.76 + . Parent=g73.t1 >! chrI AUGUSTUS CDS 485870 486005 0.99 + 0 ID=g73.t1.cds;Parent=g73.t1 >*************** >*** 2668,2669 **** >! chrI AUGUSTUS CDS 489977 490191 0.16 + 2 ID=g73.t1.cds;Parent=g73.t1 >! chrI AUGUSTUS CDS 490238 490858 0.97 + 0 ID=g73.t1.cds;Parent=g73.t1 >--- 2668,2669 ---- >! chrI AUGUSTUS CDS 489977 490191 0.21 + 2 ID=g73.t1.cds;Parent=g73.t1 >! chrI AUGUSTUS CDS 490238 490858 0.99 + 0 ID=g73.t1.cds;Parent=g73.t1 >*************** >*** 2671 **** >! chrI AUGUSTUS CDS 494937 495299 0.8 + 0 ID=g73.t1.cds;Parent=g73.t1 >--- 2671 ---- >! chrI AUGUSTUS CDS 494937 495299 0.76 + 0 ID=g73.t1.cds;Parent=g73.t1 >*************** >*** 2674 **** >! chrI AUGUSTUS three_prime_utr 497263 497384 0.95 + . Parent=g73.t1 >--- 2674 ---- >! chrI AUGUSTUS three_prime_utr 497263 497384 0.98 + . Parent=g73.t1 >*************** >*** 2699,2700 **** >! chrI AUGUSTUS gene 498101 506255 0.23 + . ID=g74 >! chrI AUGUSTUS transcript 498101 506255 0.23 + . ID=g74.t1;Parent=g74 >--- 2699,2700 ---- >! chrI AUGUSTUS gene 498101 506255 0.25 + . ID=g74 >! chrI AUGUSTUS transcript 498101 506255 0.25 + . ID=g74.t1;Parent=g74 >*************** >*** 2702 **** >! chrI AUGUSTUS five_prime_utr 498101 498136 0.81 + . Parent=g74.t1 >--- 2702 ---- >! chrI AUGUSTUS five_prime_utr 498101 498136 0.83 + . Parent=g74.t1 >*************** >*** 2709 **** >! chrI AUGUSTUS CDS 498137 498428 0.99 + 0 ID=g74.t1.cds;Parent=g74.t1 >--- 2709 ---- >! chrI AUGUSTUS CDS 498137 498428 1 + 0 ID=g74.t1.cds;Parent=g74.t1 >*************** >*** 2716,2717 **** >! chrI AUGUSTUS three_prime_utr 505684 505704 0.91 + . Parent=g74.t1 >! chrI AUGUSTUS three_prime_utr 505961 506255 0.31 + . Parent=g74.t1 >--- 2716,2717 ---- >! chrI AUGUSTUS three_prime_utr 505684 505704 0.89 + . Parent=g74.t1 >! chrI AUGUSTUS three_prime_utr 505961 506255 0.3 + . Parent=g74.t1 >*************** >*** 2737,2738 **** >! chrI AUGUSTUS gene 510942 511710 0.03 - . ID=g75 >! chrI AUGUSTUS transcript 510942 511710 0.03 - . ID=g75.t1;Parent=g75 >--- 2737,2738 ---- >! chrI AUGUSTUS gene 510942 511710 0.02 - . ID=g75 >! chrI AUGUSTUS transcript 510942 511710 0.02 - . ID=g75.t1;Parent=g75 >*************** >*** 2740 **** >! chrI AUGUSTUS three_prime_utr 510942 510990 0.22 - . Parent=g75.t1 >--- 2740 ---- >! chrI AUGUSTUS three_prime_utr 510942 510990 0.2 - . Parent=g75.t1 >*************** >*** 2742,2744 **** >! chrI AUGUSTUS intron 511279 511558 0.84 - . Parent=g75.t1 >! chrI AUGUSTUS CDS 510991 511278 0.21 - 0 ID=g75.t1.cds;Parent=g75.t1 >! chrI AUGUSTUS CDS 511559 511684 0.8 - 0 ID=g75.t1.cds;Parent=g75.t1 >--- 2742,2744 ---- >! chrI AUGUSTUS intron 511279 511558 0.83 - . Parent=g75.t1 >! chrI AUGUSTUS CDS 510991 511278 0.22 - 0 ID=g75.t1.cds;Parent=g75.t1 >! chrI AUGUSTUS CDS 511559 511684 0.81 - 0 ID=g75.t1.cds;Parent=g75.t1 >*************** >*** 2746 **** >! chrI AUGUSTUS five_prime_utr 511685 511710 0.3 - . Parent=g75.t1 >--- 2746 ---- >! chrI AUGUSTUS five_prime_utr 511685 511710 0.23 - . Parent=g75.t1 >*************** >*** 2762,2763 **** >! chrI AUGUSTUS gene 537110 542115 0.11 + . ID=g76 >! chrI AUGUSTUS transcript 537110 542115 0.11 + . ID=g76.t1;Parent=g76 >--- 2762,2763 ---- >! chrI AUGUSTUS gene 537110 542115 0.07 + . ID=g76 >! chrI AUGUSTUS transcript 537110 542115 0.07 + . ID=g76.t1;Parent=g76 >*************** >*** 2765 **** >! chrI AUGUSTUS five_prime_utr 537110 537191 0.22 + . Parent=g76.t1 >--- 2765 ---- >! chrI AUGUSTUS five_prime_utr 537110 537191 0.26 + . Parent=g76.t1 >*************** >*** 2767 **** >! chrI AUGUSTUS intron 537213 537811 0.44 + . Parent=g76.t1 >--- 2767 ---- >! chrI AUGUSTUS intron 537213 537811 0.42 + . Parent=g76.t1 >*************** >*** 2769,2770 **** >! chrI AUGUSTUS intron 539062 540409 0.98 + . Parent=g76.t1 >! chrI AUGUSTUS intron 540747 541580 1 + . Parent=g76.t1 >--- 2769,2770 ---- >! chrI AUGUSTUS intron 539062 540409 0.97 + . Parent=g76.t1 >! chrI AUGUSTUS intron 540747 541580 0.99 + . Parent=g76.t1 >*************** >*** 2772,2774 **** >! chrI AUGUSTUS CDS 537192 537212 0.44 + 0 ID=g76.t1.cds;Parent=g76.t1 >! chrI AUGUSTUS CDS 537812 538140 0.53 + 0 ID=g76.t1.cds;Parent=g76.t1 >! chrI AUGUSTUS CDS 538769 539061 0.98 + 1 ID=g76.t1.cds;Parent=g76.t1 >--- 2772,2774 ---- >! chrI AUGUSTUS CDS 537192 537212 0.42 + 0 ID=g76.t1.cds;Parent=g76.t1 >! chrI AUGUSTUS CDS 537812 538140 0.5 + 0 ID=g76.t1.cds;Parent=g76.t1 >! chrI AUGUSTUS CDS 538769 539061 0.97 + 1 ID=g76.t1.cds;Parent=g76.t1 >*************** >*** 2776 **** >! chrI AUGUSTUS CDS 541581 541668 1 + 1 ID=g76.t1.cds;Parent=g76.t1 >--- 2776 ---- >! chrI AUGUSTUS CDS 541581 541668 0.99 + 1 ID=g76.t1.cds;Parent=g76.t1 >*************** >*** 2779 **** >! chrI AUGUSTUS three_prime_utr 541850 542115 0.33 + . Parent=g76.t1 >--- 2779 ---- >! chrI AUGUSTUS three_prime_utr 541850 542115 0.27 + . Parent=g76.t1 >*************** >*** 2798,2799 **** >! chrI AUGUSTUS gene 544710 546186 0.24 + . ID=g77 >! chrI AUGUSTUS transcript 544710 546186 0.24 + . ID=g77.t1;Parent=g77 >--- 2798,2799 ---- >! chrI AUGUSTUS gene 544710 546186 0.18 + . ID=g77 >! chrI AUGUSTUS transcript 544710 546186 0.18 + . ID=g77.t1;Parent=g77 >*************** >*** 2801 **** >! chrI AUGUSTUS five_prime_utr 544710 544773 0.36 + . Parent=g77.t1 >--- 2801 ---- >! chrI AUGUSTUS five_prime_utr 544710 544773 0.25 + . Parent=g77.t1 >*************** >*** 2805 **** >! chrI AUGUSTUS intron 545865 545941 0.92 + . Parent=g77.t1 >--- 2805 ---- >! chrI AUGUSTUS intron 545865 545941 0.9 + . Parent=g77.t1 >*************** >*** 2811 **** >! chrI AUGUSTUS three_prime_utr 546155 546186 0.86 + . Parent=g77.t1 >--- 2811 ---- >! chrI AUGUSTUS three_prime_utr 546155 546186 0.79 + . Parent=g77.t1 >*************** >*** 2831 **** >! chrI AUGUSTUS three_prime_utr 546861 546966 0.86 - . Parent=g78.t1 >--- 2831 ---- >! chrI AUGUSTUS three_prime_utr 546861 546966 0.76 - . Parent=g78.t1 >*************** >*** 2834 **** >! chrI AUGUSTUS intron 547334 548121 0.98 - . Parent=g78.t1 >--- 2834 ---- >! chrI AUGUSTUS intron 547334 548121 0.99 - . Parent=g78.t1 >*************** >*** 2837 **** >! chrI AUGUSTUS CDS 548122 548226 0.35 - 0 ID=g78.t1.cds;Parent=g78.t1 >--- 2837 ---- >! chrI AUGUSTUS CDS 548122 548226 0.32 - 0 ID=g78.t1.cds;Parent=g78.t1 >*************** >*** 2855,2856 **** >! chrI AUGUSTUS gene 549240 550622 0.66 + . ID=g79 >! chrI AUGUSTUS transcript 549240 550622 0.66 + . ID=g79.t1;Parent=g79 >--- 2855,2856 ---- >! chrI AUGUSTUS gene 549240 550622 0.65 + . ID=g79 >! chrI AUGUSTUS transcript 549240 550622 0.65 + . ID=g79.t1;Parent=g79 >*************** >*** 2858 **** >! chrI AUGUSTUS five_prime_utr 549240 549296 0.86 + . Parent=g79.t1 >--- 2858 ---- >! chrI AUGUSTUS five_prime_utr 549240 549296 0.85 + . Parent=g79.t1 >*************** >*** 2860 **** >! chrI AUGUSTUS intron 549340 549774 0.99 + . Parent=g79.t1 >--- 2860 ---- >! chrI AUGUSTUS intron 549340 549774 0.97 + . Parent=g79.t1 >*************** >*** 2863 **** >! chrI AUGUSTUS CDS 549297 549339 0.94 + 0 ID=g79.t1.cds;Parent=g79.t1 >--- 2863 ---- >! chrI AUGUSTUS CDS 549297 549339 0.97 + 0 ID=g79.t1.cds;Parent=g79.t1 >*************** >*** 2868 **** >! chrI AUGUSTUS three_prime_utr 550545 550622 0.8 + . Parent=g79.t1 >--- 2868 ---- >! chrI AUGUSTUS three_prime_utr 550545 550622 0.79 + . Parent=g79.t1 >*************** >*** 2885,2886 **** >! chrI AUGUSTUS gene 551261 551649 0.37 - . ID=g80 >! chrI AUGUSTUS transcript 551261 551649 0.37 - . ID=g80.t1;Parent=g80 >--- 2885,2886 ---- >! chrI AUGUSTUS gene 551261 551649 0.35 - . ID=g80 >! chrI AUGUSTUS transcript 551261 551649 0.35 - . ID=g80.t1;Parent=g80 >*************** >*** 2892 **** >! chrI AUGUSTUS five_prime_utr 551592 551649 0.42 - . Parent=g80.t1 >--- 2892 ---- >! chrI AUGUSTUS five_prime_utr 551592 551649 0.43 - . Parent=g80.t1 >*************** >*** 2909 **** >! chrI AUGUSTUS five_prime_utr 553040 553094 0.33 + . Parent=g81.t1 >--- 2909 ---- >! chrI AUGUSTUS five_prime_utr 553040 553094 0.42 + . Parent=g81.t1 >*************** >*** 2911 **** >! chrI AUGUSTUS intron 553437 555147 0.82 + . Parent=g81.t1 >--- 2911 ---- >! chrI AUGUSTUS intron 553437 555147 0.84 + . Parent=g81.t1 >*************** >*** 2913,2915 **** >! chrI AUGUSTUS intron 556390 556440 0.92 + . Parent=g81.t1 >! chrI AUGUSTUS intron 556532 556600 0.91 + . Parent=g81.t1 >! chrI AUGUSTUS intron 556772 556873 0.95 + . Parent=g81.t1 >--- 2913,2915 ---- >! chrI AUGUSTUS intron 556390 556440 0.94 + . Parent=g81.t1 >! chrI AUGUSTUS intron 556532 556600 0.96 + . Parent=g81.t1 >! chrI AUGUSTUS intron 556772 556873 0.89 + . Parent=g81.t1 >*************** >*** 2917,2918 **** >! chrI AUGUSTUS CDS 553095 553436 0.81 + 0 ID=g81.t1.cds;Parent=g81.t1 >! chrI AUGUSTUS CDS 555148 555212 0.87 + 0 ID=g81.t1.cds;Parent=g81.t1 >--- 2917,2918 ---- >! chrI AUGUSTUS CDS 553095 553436 0.82 + 0 ID=g81.t1.cds;Parent=g81.t1 >! chrI AUGUSTUS CDS 555148 555212 0.89 + 0 ID=g81.t1.cds;Parent=g81.t1 >*************** >*** 2920,2922 **** >! chrI AUGUSTUS CDS 556441 556531 0.95 + 1 ID=g81.t1.cds;Parent=g81.t1 >! chrI AUGUSTUS CDS 556601 556771 0.94 + 0 ID=g81.t1.cds;Parent=g81.t1 >! chrI AUGUSTUS CDS 556874 557016 0.95 + 0 ID=g81.t1.cds;Parent=g81.t1 >--- 2920,2922 ---- >! chrI AUGUSTUS CDS 556441 556531 0.96 + 1 ID=g81.t1.cds;Parent=g81.t1 >! chrI AUGUSTUS CDS 556601 556771 1 + 0 ID=g81.t1.cds;Parent=g81.t1 >! chrI AUGUSTUS CDS 556874 557016 0.87 + 0 ID=g81.t1.cds;Parent=g81.t1 >*************** >*** 2945,2946 **** >! chrI AUGUSTUS gene 558160 561878 0.12 + . ID=g82 >! chrI AUGUSTUS transcript 558160 561878 0.12 + . ID=g82.t1;Parent=g82 >--- 2945,2946 ---- >! chrI AUGUSTUS gene 558160 561878 0.11 + . ID=g82 >! chrI AUGUSTUS transcript 558160 561878 0.11 + . ID=g82.t1;Parent=g82 >*************** >*** 2948 **** >! chrI AUGUSTUS five_prime_utr 558160 558195 0.8 + . Parent=g82.t1 >--- 2948 ---- >! chrI AUGUSTUS five_prime_utr 558160 558195 0.81 + . Parent=g82.t1 >*************** >*** 2951 **** >! chrI AUGUSTUS intron 558729 558774 0.99 + . Parent=g82.t1 >--- 2951 ---- >! chrI AUGUSTUS intron 558729 558774 1 + . Parent=g82.t1 >*************** >*** 2954 **** >! chrI AUGUSTUS intron 559991 560888 0.7 + . Parent=g82.t1 >--- 2954 ---- >! chrI AUGUSTUS intron 559991 560888 0.75 + . Parent=g82.t1 >*************** >*** 2956,2957 **** >! chrI AUGUSTUS intron 561197 561348 0.8 + . Parent=g82.t1 >! chrI AUGUSTUS intron 561480 561526 0.8 + . Parent=g82.t1 >--- 2956,2957 ---- >! chrI AUGUSTUS intron 561197 561348 0.81 + . Parent=g82.t1 >! chrI AUGUSTUS intron 561480 561526 0.81 + . Parent=g82.t1 >*************** >*** 2960 **** >! chrI AUGUSTUS CDS 558775 558945 0.99 + 0 ID=g82.t1.cds;Parent=g82.t1 >--- 2960 ---- >! chrI AUGUSTUS CDS 558775 558945 1 + 0 ID=g82.t1.cds;Parent=g82.t1 >*************** >*** 2962 **** >! chrI AUGUSTUS CDS 559820 559990 0.7 + 1 ID=g82.t1.cds;Parent=g82.t1 >--- 2962 ---- >! chrI AUGUSTUS CDS 559820 559990 0.75 + 1 ID=g82.t1.cds;Parent=g82.t1 >*************** >*** 2964,2966 **** >! chrI AUGUSTUS CDS 561026 561196 0.99 + 0 ID=g82.t1.cds;Parent=g82.t1 >! chrI AUGUSTUS CDS 561349 561479 0.8 + 0 ID=g82.t1.cds;Parent=g82.t1 >! chrI AUGUSTUS CDS 561527 561821 0.74 + 1 ID=g82.t1.cds;Parent=g82.t1 >--- 2964,2966 ---- >! chrI AUGUSTUS CDS 561026 561196 1 + 0 ID=g82.t1.cds;Parent=g82.t1 >! chrI AUGUSTUS CDS 561349 561479 0.81 + 0 ID=g82.t1.cds;Parent=g82.t1 >! chrI AUGUSTUS CDS 561527 561821 0.76 + 1 ID=g82.t1.cds;Parent=g82.t1 >*************** >*** 2968 **** >! chrI AUGUSTUS three_prime_utr 561822 561878 0.2 + . Parent=g82.t1 >--- 2968 ---- >! chrI AUGUSTUS three_prime_utr 561822 561878 0.22 + . Parent=g82.t1 >*************** >*** 2988,2989 **** >! chrI AUGUSTUS gene 562620 564368 0.25 + . ID=g83 >! chrI AUGUSTUS transcript 562620 564368 0.25 + . ID=g83.t1;Parent=g83 >--- 2988,2989 ---- >! chrI AUGUSTUS gene 562620 564368 0.21 + . ID=g83 >! chrI AUGUSTUS transcript 562620 564368 0.21 + . ID=g83.t1;Parent=g83 >*************** >*** 2991 **** >! chrI AUGUSTUS five_prime_utr 562620 562668 0.48 + . Parent=g83.t1 >--- 2991 ---- >! chrI AUGUSTUS five_prime_utr 562620 562668 0.4 + . Parent=g83.t1 >*************** >*** 2993 **** >! chrI AUGUSTUS CDS 562669 562998 0.97 + 0 ID=g83.t1.cds;Parent=g83.t1 >--- 2993 ---- >! chrI AUGUSTUS CDS 562669 562998 0.96 + 0 ID=g83.t1.cds;Parent=g83.t1 >*************** >*** 2995,2996 **** >! chrI AUGUSTUS three_prime_utr 562999 563096 0.8 + . Parent=g83.t1 >! chrI AUGUSTUS three_prime_utr 564153 564368 0.58 + . Parent=g83.t1 >--- 2995,2996 ---- >! chrI AUGUSTUS three_prime_utr 562999 563096 0.7 + . Parent=g83.t1 >! chrI AUGUSTUS three_prime_utr 564153 564368 0.6 + . Parent=g83.t1 >*************** >*** 3013,3014 **** >! chrI AUGUSTUS gene 567530 568264 0.1 + . ID=g84 >! chrI AUGUSTUS transcript 567530 568264 0.1 + . ID=g84.t1;Parent=g84 >--- 3013,3014 ---- >! chrI AUGUSTUS gene 567530 568264 0.18 + . ID=g84 >! chrI AUGUSTUS transcript 567530 568264 0.18 + . ID=g84.t1;Parent=g84 >*************** >*** 3016 **** >! chrI AUGUSTUS five_prime_utr 567530 567806 0.25 + . Parent=g84.t1 >--- 3016 ---- >! chrI AUGUSTUS five_prime_utr 567530 567806 0.35 + . Parent=g84.t1 >*************** >*** 3020 **** >! chrI AUGUSTUS CDS 567807 567967 0.32 + 0 ID=g84.t1.cds;Parent=g84.t1 >--- 3020 ---- >! chrI AUGUSTUS CDS 567807 567967 0.45 + 0 ID=g84.t1.cds;Parent=g84.t1 >*************** >*** 3024 **** >! chrI AUGUSTUS three_prime_utr 568222 568264 0.38 + . Parent=g84.t1 >--- 3024 ---- >! chrI AUGUSTUS three_prime_utr 568222 568264 0.4 + . Parent=g84.t1 >*************** >*** 3039,3040 **** >! chrI AUGUSTUS gene 568840 570774 0.29 + . ID=g85 >! chrI AUGUSTUS transcript 568840 570774 0.29 + . ID=g85.t1;Parent=g85 >--- 3039,3040 ---- >! chrI AUGUSTUS gene 568840 570774 0.33 + . ID=g85 >! chrI AUGUSTUS transcript 568840 570774 0.33 + . ID=g85.t1;Parent=g85 >*************** >*** 3042 **** >! chrI AUGUSTUS five_prime_utr 568840 568872 0.35 + . Parent=g85.t1 >--- 3042 ---- >! chrI AUGUSTUS five_prime_utr 568840 568872 0.36 + . Parent=g85.t1 >*************** >*** 3044,3052 **** >! chrI AUGUSTUS intron 568960 569837 0.97 + . Parent=g85.t1 >! chrI AUGUSTUS intron 570027 570072 0.91 + . Parent=g85.t1 >! chrI AUGUSTUS intron 570146 570510 0.91 + . Parent=g85.t1 >! chrI AUGUSTUS intron 570598 570646 0.99 + . Parent=g85.t1 >! chrI AUGUSTUS CDS 568873 568959 0.9 + 0 ID=g85.t1.cds;Parent=g85.t1 >! chrI AUGUSTUS CDS 569838 570026 0.91 + 0 ID=g85.t1.cds;Parent=g85.t1 >! chrI AUGUSTUS CDS 570073 570145 0.91 + 0 ID=g85.t1.cds;Parent=g85.t1 >! chrI AUGUSTUS CDS 570511 570597 0.99 + 2 ID=g85.t1.cds;Parent=g85.t1 >! chrI AUGUSTUS CDS 570647 570747 0.99 + 2 ID=g85.t1.cds;Parent=g85.t1 >--- 3044,3052 ---- >! chrI AUGUSTUS intron 568960 569837 0.98 + . Parent=g85.t1 >! chrI AUGUSTUS intron 570027 570072 0.94 + . Parent=g85.t1 >! chrI AUGUSTUS intron 570146 570510 0.95 + . Parent=g85.t1 >! chrI AUGUSTUS intron 570598 570646 1 + . Parent=g85.t1 >! chrI AUGUSTUS CDS 568873 568959 0.93 + 0 ID=g85.t1.cds;Parent=g85.t1 >! chrI AUGUSTUS CDS 569838 570026 0.95 + 0 ID=g85.t1.cds;Parent=g85.t1 >! chrI AUGUSTUS CDS 570073 570145 0.94 + 0 ID=g85.t1.cds;Parent=g85.t1 >! chrI AUGUSTUS CDS 570511 570597 1 + 2 ID=g85.t1.cds;Parent=g85.t1 >! chrI AUGUSTUS CDS 570647 570747 1 + 2 ID=g85.t1.cds;Parent=g85.t1 >*************** >*** 3054 **** >! chrI AUGUSTUS three_prime_utr 570748 570774 0.91 + . Parent=g85.t1 >--- 3054 ---- >! chrI AUGUSTUS three_prime_utr 570748 570774 0.89 + . Parent=g85.t1 >*************** >*** 3071,3072 **** >! chrI AUGUSTUS gene 571763 576039 0.21 - . ID=g86 >! chrI AUGUSTUS transcript 571763 576039 0.21 - . ID=g86.t1;Parent=g86 >--- 3071,3072 ---- >! chrI AUGUSTUS gene 571763 576039 0.14 - . ID=g86 >! chrI AUGUSTUS transcript 571763 576039 0.14 - . ID=g86.t1;Parent=g86 >*************** >*** 3074 **** >! chrI AUGUSTUS three_prime_utr 571763 571988 0.22 - . Parent=g86.t1 >--- 3074 ---- >! chrI AUGUSTUS three_prime_utr 571763 571988 0.17 - . Parent=g86.t1 >*************** >*** 3078,3079 **** >! chrI AUGUSTUS intron 572521 572570 1 - . Parent=g86.t1 >! chrI AUGUSTUS intron 572738 573741 1 - . Parent=g86.t1 >--- 3078,3079 ---- >! chrI AUGUSTUS intron 572521 572570 0.98 - . Parent=g86.t1 >! chrI AUGUSTUS intron 572738 573741 0.98 - . Parent=g86.t1 >*************** >*** 3082 **** >! chrI AUGUSTUS intron 574446 574521 0.99 - . Parent=g86.t1 >--- 3082 ---- >! chrI AUGUSTUS intron 574446 574521 1 - . Parent=g86.t1 >*************** >*** 3087,3088 **** >! chrI AUGUSTUS CDS 572357 572520 1 - 1 ID=g86.t1.cds;Parent=g86.t1 >! chrI AUGUSTUS CDS 572571 572737 1 - 0 ID=g86.t1.cds;Parent=g86.t1 >--- 3087,3088 ---- >! chrI AUGUSTUS CDS 572357 572520 0.98 - 1 ID=g86.t1.cds;Parent=g86.t1 >! chrI AUGUSTUS CDS 572571 572737 0.98 - 0 ID=g86.t1.cds;Parent=g86.t1 >*************** >*** 3091 **** >! chrI AUGUSTUS CDS 574314 574445 0.99 - 2 ID=g86.t1.cds;Parent=g86.t1 >--- 3091 ---- >! chrI AUGUSTUS CDS 574314 574445 1 - 2 ID=g86.t1.cds;Parent=g86.t1 >*************** >*** 3094 **** >! chrI AUGUSTUS CDS 575842 576007 0.87 - 0 ID=g86.t1.cds;Parent=g86.t1 >--- 3094 ---- >! chrI AUGUSTUS CDS 575842 576007 0.92 - 0 ID=g86.t1.cds;Parent=g86.t1 >*************** >*** 3096 **** >! chrI AUGUSTUS five_prime_utr 576008 576039 0.86 - . Parent=g86.t1 >--- 3096 ---- >! chrI AUGUSTUS five_prime_utr 576008 576039 0.85 - . Parent=g86.t1 >*************** >*** 3117,3118 **** >! chrI AUGUSTUS gene 581031 586219 0.04 - . ID=g87 >! chrI AUGUSTUS transcript 581031 586219 0.04 - . ID=g87.t1;Parent=g87 >--- 3117,3118 ---- >! chrI AUGUSTUS gene 581031 586219 0.08 - . ID=g87 >! chrI AUGUSTUS transcript 581031 586219 0.08 - . ID=g87.t1;Parent=g87 >*************** >*** 3120 **** >! chrI AUGUSTUS three_prime_utr 581031 581203 0.3 - . Parent=g87.t1 >--- 3120 ---- >! chrI AUGUSTUS three_prime_utr 581031 581203 0.28 - . Parent=g87.t1 >*************** >*** 3128 **** >! chrI AUGUSTUS CDS 585942 586123 0.99 - 0 ID=g87.t1.cds;Parent=g87.t1 >--- 3128 ---- >! chrI AUGUSTUS CDS 585942 586123 1 - 0 ID=g87.t1.cds;Parent=g87.t1 >*************** >*** 3130 **** >! chrI AUGUSTUS five_prime_utr 586124 586219 0.19 - . Parent=g87.t1 >--- 3130 ---- >! chrI AUGUSTUS five_prime_utr 586124 586219 0.27 - . Parent=g87.t1 >*************** >*** 3148,3149 **** >! chrI AUGUSTUS gene 587530 595359 0.02 - . ID=g88 >! chrI AUGUSTUS transcript 587530 595359 0.02 - . ID=g88.t1;Parent=g88 >--- 3148,3149 ---- >! chrI AUGUSTUS gene 587530 595359 0.04 - . ID=g88 >! chrI AUGUSTUS transcript 587530 595359 0.04 - . ID=g88.t1;Parent=g88 >*************** >*** 3153,3158 **** >! chrI AUGUSTUS intron 587838 589052 0.94 - . Parent=g88.t1 >! chrI AUGUSTUS intron 589269 589449 0.55 - . Parent=g88.t1 >! chrI AUGUSTUS intron 589638 589689 0.98 - . Parent=g88.t1 >! chrI AUGUSTUS intron 589810 590535 0.99 - . Parent=g88.t1 >! chrI AUGUSTUS intron 590952 591001 0.59 - . Parent=g88.t1 >! chrI AUGUSTUS intron 591146 591887 0.57 - . Parent=g88.t1 >--- 3153,3158 ---- >! chrI AUGUSTUS intron 587838 589052 0.96 - . Parent=g88.t1 >! chrI AUGUSTUS intron 589269 589449 0.67 - . Parent=g88.t1 >! chrI AUGUSTUS intron 589638 589689 0.99 - . Parent=g88.t1 >! chrI AUGUSTUS intron 589810 590535 1 - . Parent=g88.t1 >! chrI AUGUSTUS intron 590952 591001 0.58 - . Parent=g88.t1 >! chrI AUGUSTUS intron 591146 591887 0.53 - . Parent=g88.t1 >*************** >*** 3160 **** >! chrI AUGUSTUS intron 592617 593495 0.95 - . Parent=g88.t1 >--- 3160 ---- >! chrI AUGUSTUS intron 592617 593495 0.97 - . Parent=g88.t1 >*************** >*** 3164,3171 **** >! chrI AUGUSTUS intron 594533 595200 0.77 - . Parent=g88.t1 >! chrI AUGUSTUS CDS 587707 587837 0.98 - 2 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 589053 589268 0.52 - 2 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 589450 589637 1 - 1 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 589690 589809 0.98 - 1 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 590536 590951 0.99 - 0 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 591002 591145 0.59 - 0 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 591888 592388 1 - 0 ID=g88.t1.cds;Parent=g88.t1 >--- 3164,3171 ---- >! chrI AUGUSTUS intron 594533 595200 0.84 - . Parent=g88.t1 >! chrI AUGUSTUS CDS 587707 587837 1 - 2 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 589053 589268 0.65 - 2 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 589450 589637 0.99 - 1 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 589690 589809 0.99 - 1 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 590536 590951 1 - 0 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 591002 591145 0.58 - 0 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 591888 592388 0.98 - 0 ID=g88.t1.cds;Parent=g88.t1 >*************** >*** 3173 **** >! chrI AUGUSTUS CDS 593496 593770 0.99 - 0 ID=g88.t1.cds;Parent=g88.t1 >--- 3173 ---- >! chrI AUGUSTUS CDS 593496 593770 0.98 - 0 ID=g88.t1.cds;Parent=g88.t1 >*************** >*** 3176,3177 **** >! chrI AUGUSTUS CDS 594388 594532 0.99 - 2 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 595201 595243 0.77 - 0 ID=g88.t1.cds;Parent=g88.t1 >--- 3176,3177 ---- >! chrI AUGUSTUS CDS 594388 594532 1 - 2 ID=g88.t1.cds;Parent=g88.t1 >! chrI AUGUSTUS CDS 595201 595243 0.84 - 0 ID=g88.t1.cds;Parent=g88.t1 >*************** >*** 3203,3204 **** >! chrI AUGUSTUS gene 599810 602650 0.31 + . ID=g89 >! chrI AUGUSTUS transcript 599810 602650 0.31 + . ID=g89.t1;Parent=g89 >--- 3203,3204 ---- >! chrI AUGUSTUS gene 599810 602650 0.2 + . ID=g89 >! chrI AUGUSTUS transcript 599810 602650 0.2 + . ID=g89.t1;Parent=g89 >*************** >*** 3206 **** >! chrI AUGUSTUS five_prime_utr 599810 599989 0.34 + . Parent=g89.t1 >--- 3206 ---- >! chrI AUGUSTUS five_prime_utr 599810 599989 0.27 + . Parent=g89.t1 >*************** >*** 3208 **** >! chrI AUGUSTUS intron 600036 600080 1 + . Parent=g89.t1 >--- 3208 ---- >! chrI AUGUSTUS intron 600036 600080 0.99 + . Parent=g89.t1 >*************** >*** 3211,3213 **** >! chrI AUGUSTUS intron 600634 600997 0.99 + . Parent=g89.t1 >! chrI AUGUSTUS intron 601428 601469 0.87 + . Parent=g89.t1 >! chrI AUGUSTUS intron 601545 601603 0.99 + . Parent=g89.t1 >--- 3211,3213 ---- >! chrI AUGUSTUS intron 600634 600997 1 + . Parent=g89.t1 >! chrI AUGUSTUS intron 601428 601469 0.8 + . Parent=g89.t1 >! chrI AUGUSTUS intron 601545 601603 0.98 + . Parent=g89.t1 >*************** >*** 3216,3217 **** >! chrI AUGUSTUS intron 602393 602477 0.99 + . Parent=g89.t1 >! chrI AUGUSTUS CDS 599990 600035 1 + 0 ID=g89.t1.cds;Parent=g89.t1 >--- 3216,3217 ---- >! chrI AUGUSTUS intron 602393 602477 1 + . Parent=g89.t1 >! chrI AUGUSTUS CDS 599990 600035 0.99 + 0 ID=g89.t1.cds;Parent=g89.t1 >*************** >*** 3220,3222 **** >! chrI AUGUSTUS CDS 600516 600633 0.99 + 1 ID=g89.t1.cds;Parent=g89.t1 >! chrI AUGUSTUS CDS 600998 601427 0.88 + 0 ID=g89.t1.cds;Parent=g89.t1 >! chrI AUGUSTUS CDS 601470 601544 0.87 + 2 ID=g89.t1.cds;Parent=g89.t1 >--- 3220,3222 ---- >! chrI AUGUSTUS CDS 600516 600633 1 + 1 ID=g89.t1.cds;Parent=g89.t1 >! chrI AUGUSTUS CDS 600998 601427 0.82 + 0 ID=g89.t1.cds;Parent=g89.t1 >! chrI AUGUSTUS CDS 601470 601544 0.8 + 2 ID=g89.t1.cds;Parent=g89.t1 >*************** >*** 3225 **** >! chrI AUGUSTUS CDS 602165 602392 0.99 + 1 ID=g89.t1.cds;Parent=g89.t1 >--- 3225 ---- >! chrI AUGUSTUS CDS 602165 602392 1 + 1 ID=g89.t1.cds;Parent=g89.t1 >*************** >*** 3228 **** >! chrI AUGUSTUS three_prime_utr 602629 602650 1 + . Parent=g89.t1 >--- 3228 ---- >! chrI AUGUSTUS three_prime_utr 602629 602650 0.97 + . Parent=g89.t1 >*************** >*** 3247,3248 **** >! chrI AUGUSTUS gene 604080 605800 0.36 + . ID=g90 >! chrI AUGUSTUS transcript 604080 605800 0.36 + . ID=g90.t1;Parent=g90 >--- 3247,3248 ---- >! chrI AUGUSTUS gene 604080 605800 0.27 + . ID=g90 >! chrI AUGUSTUS transcript 604080 605800 0.27 + . ID=g90.t1;Parent=g90 >*************** >*** 3250 **** >! chrI AUGUSTUS five_prime_utr 604080 604239 0.8 + . Parent=g90.t1 >--- 3250 ---- >! chrI AUGUSTUS five_prime_utr 604080 604239 0.81 + . Parent=g90.t1 >*************** >*** 3252,3254 **** >! chrI AUGUSTUS intron 604308 605393 0.71 + . Parent=g90.t1 >! chrI AUGUSTUS CDS 604240 604307 0.78 + 0 ID=g90.t1.cds;Parent=g90.t1 >! chrI AUGUSTUS CDS 605394 605592 0.72 + 1 ID=g90.t1.cds;Parent=g90.t1 >--- 3252,3254 ---- >! chrI AUGUSTUS intron 604308 605393 0.78 + . Parent=g90.t1 >! chrI AUGUSTUS CDS 604240 604307 0.9 + 0 ID=g90.t1.cds;Parent=g90.t1 >! chrI AUGUSTUS CDS 605394 605592 0.79 + 1 ID=g90.t1.cds;Parent=g90.t1 >*************** >*** 3256 **** >! chrI AUGUSTUS three_prime_utr 605593 605800 0.37 + . Parent=g90.t1 >--- 3256 ---- >! chrI AUGUSTUS three_prime_utr 605593 605800 0.34 + . Parent=g90.t1 >*************** >*** 3272,3273 **** >! chrI AUGUSTUS gene 606680 613299 0.57 + . ID=g91 >! chrI AUGUSTUS transcript 606680 613299 0.57 + . ID=g91.t1;Parent=g91 >--- 3272,3273 ---- >! chrI AUGUSTUS gene 606680 613299 0.51 + . ID=g91 >! chrI AUGUSTUS transcript 606680 613299 0.51 + . ID=g91.t1;Parent=g91 >*************** >*** 3275 **** >! chrI AUGUSTUS five_prime_utr 606680 606741 0.66 + . Parent=g91.t1 >--- 3275 ---- >! chrI AUGUSTUS five_prime_utr 606680 606741 0.63 + . Parent=g91.t1 >*************** >*** 3278,3280 **** >! chrI AUGUSTUS intron 607297 608188 0.99 + . Parent=g91.t1 >! chrI AUGUSTUS intron 608310 608861 0.98 + . Parent=g91.t1 >! chrI AUGUSTUS intron 609029 609889 0.99 + . Parent=g91.t1 >--- 3278,3280 ---- >! chrI AUGUSTUS intron 607297 608188 0.98 + . Parent=g91.t1 >! chrI AUGUSTUS intron 608310 608861 0.99 + . Parent=g91.t1 >! chrI AUGUSTUS intron 609029 609889 0.98 + . Parent=g91.t1 >*************** >*** 3283,3289 **** >! chrI AUGUSTUS intron 611957 612003 0.99 + . Parent=g91.t1 >! chrI AUGUSTUS intron 612097 612788 0.99 + . Parent=g91.t1 >! chrI AUGUSTUS CDS 606742 606933 0.97 + 0 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 607213 607296 0.99 + 0 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 608189 608309 0.98 + 0 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 608862 609028 0.99 + 2 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 609890 610309 0.97 + 0 ID=g91.t1.cds;Parent=g91.t1 >--- 3283,3289 ---- >! chrI AUGUSTUS intron 611957 612003 1 + . Parent=g91.t1 >! chrI AUGUSTUS intron 612097 612788 1 + . Parent=g91.t1 >! chrI AUGUSTUS CDS 606742 606933 0.96 + 0 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 607213 607296 0.98 + 0 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 608189 608309 0.99 + 0 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 608862 609028 0.97 + 2 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 609890 610309 0.99 + 0 ID=g91.t1.cds;Parent=g91.t1 >*************** >*** 3292,3293 **** >! chrI AUGUSTUS CDS 612004 612096 0.99 + 0 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 612789 613151 1 + 0 ID=g91.t1.cds;Parent=g91.t1 >--- 3292,3293 ---- >! chrI AUGUSTUS CDS 612004 612096 1 + 0 ID=g91.t1.cds;Parent=g91.t1 >! chrI AUGUSTUS CDS 612789 613151 0.98 + 0 ID=g91.t1.cds;Parent=g91.t1 >*************** >*** 3295 **** >! chrI AUGUSTUS three_prime_utr 613152 613299 0.94 + . Parent=g91.t1 >--- 3295 ---- >! chrI AUGUSTUS three_prime_utr 613152 613299 0.89 + . Parent=g91.t1 >*************** >*** 3316,3317 **** >! chrI AUGUSTUS gene 613760 617362 0.07 + . ID=g92 >! chrI AUGUSTUS transcript 613760 617362 0.07 + . ID=g92.t1;Parent=g92 >--- 3316,3317 ---- >! chrI AUGUSTUS gene 613760 617362 0.06 + . ID=g92 >! chrI AUGUSTUS transcript 613760 617362 0.06 + . ID=g92.t1;Parent=g92 >*************** >*** 3319 **** >! chrI AUGUSTUS five_prime_utr 613760 614031 0.24 + . Parent=g92.t1 >--- 3319 ---- >! chrI AUGUSTUS five_prime_utr 613760 614031 0.27 + . Parent=g92.t1 >*************** >*** 3321,3329 **** >! chrI AUGUSTUS intron 614491 614806 0.66 + . Parent=g92.t1 >! chrI AUGUSTUS intron 614821 615077 0.55 + . Parent=g92.t1 >! chrI AUGUSTUS intron 615156 615848 0.91 + . Parent=g92.t1 >! chrI AUGUSTUS intron 615939 617091 0.64 + . Parent=g92.t1 >! chrI AUGUSTUS CDS 614032 614490 0.82 + 0 ID=g92.t1.cds;Parent=g92.t1 >! chrI AUGUSTUS CDS 614807 614820 0.45 + 0 ID=g92.t1.cds;Parent=g92.t1 >! chrI AUGUSTUS CDS 615078 615155 0.65 + 1 ID=g92.t1.cds;Parent=g92.t1 >! chrI AUGUSTUS CDS 615849 615938 0.92 + 1 ID=g92.t1.cds;Parent=g92.t1 >! chrI AUGUSTUS CDS 617092 617110 0.64 + 1 ID=g92.t1.cds;Parent=g92.t1 >--- 3321,3329 ---- >! chrI AUGUSTUS intron 614491 614806 0.64 + . Parent=g92.t1 >! chrI AUGUSTUS intron 614821 615077 0.52 + . Parent=g92.t1 >! chrI AUGUSTUS intron 615156 615848 0.88 + . Parent=g92.t1 >! chrI AUGUSTUS intron 615939 617091 0.59 + . Parent=g92.t1 >! chrI AUGUSTUS CDS 614032 614490 0.8 + 0 ID=g92.t1.cds;Parent=g92.t1 >! chrI AUGUSTUS CDS 614807 614820 0.44 + 0 ID=g92.t1.cds;Parent=g92.t1 >! chrI AUGUSTUS CDS 615078 615155 0.58 + 1 ID=g92.t1.cds;Parent=g92.t1 >! chrI AUGUSTUS CDS 615849 615938 0.96 + 1 ID=g92.t1.cds;Parent=g92.t1 >! chrI AUGUSTUS CDS 617092 617110 0.6 + 1 ID=g92.t1.cds;Parent=g92.t1 >*************** >*** 3348,3349 **** >! chrI AUGUSTUS gene 617490 620428 0.88 + . ID=g93 >! chrI AUGUSTUS transcript 617490 620428 0.88 + . ID=g93.t1;Parent=g93 >--- 3348,3349 ---- >! chrI AUGUSTUS gene 617490 620428 0.82 + . ID=g93 >! chrI AUGUSTUS transcript 617490 620428 0.82 + . ID=g93.t1;Parent=g93 >*************** >*** 3351 **** >! chrI AUGUSTUS five_prime_utr 617490 617560 1 + . Parent=g93.t1 >--- 3351 ---- >! chrI AUGUSTUS five_prime_utr 617490 617560 0.98 + . Parent=g93.t1 >*************** >*** 3354 **** >! chrI AUGUSTUS intron 617847 617889 1 + . Parent=g93.t1 >--- 3354 ---- >! chrI AUGUSTUS intron 617847 617889 0.99 + . Parent=g93.t1 >*************** >*** 3357 **** >! chrI AUGUSTUS intron 620193 620239 0.99 + . Parent=g93.t1 >--- 3357 ---- >! chrI AUGUSTUS intron 620193 620239 1 + . Parent=g93.t1 >*************** >*** 3362 **** >! chrI AUGUSTUS CDS 620058 620192 0.99 + 0 ID=g93.t1.cds;Parent=g93.t1 >--- 3362 ---- >! chrI AUGUSTUS CDS 620058 620192 1 + 0 ID=g93.t1.cds;Parent=g93.t1 >*************** >*** 3365 **** >! chrI AUGUSTUS three_prime_utr 620351 620428 0.91 + . Parent=g93.t1 >--- 3365 ---- >! chrI AUGUSTUS three_prime_utr 620351 620428 0.85 + . Parent=g93.t1 >*************** >*** 3384,3385 **** >! chrI AUGUSTUS gene 620530 621860 0.23 + . ID=g94 >! chrI AUGUSTUS transcript 620530 621860 0.23 + . ID=g94.t1;Parent=g94 >--- 3384,3385 ---- >! chrI AUGUSTUS gene 620530 621860 0.25 + . ID=g94 >! chrI AUGUSTUS transcript 620530 621860 0.25 + . ID=g94.t1;Parent=g94 >*************** >*** 3387 **** >! chrI AUGUSTUS five_prime_utr 620530 620659 0.48 + . Parent=g94.t1 >--- 3387 ---- >! chrI AUGUSTUS five_prime_utr 620530 620659 0.56 + . Parent=g94.t1 >*************** >*** 3392 **** >! chrI AUGUSTUS CDS 620660 620824 0.99 + 0 ID=g94.t1.cds;Parent=g94.t1 >--- 3392 ---- >! chrI AUGUSTUS CDS 620660 620824 1 + 0 ID=g94.t1.cds;Parent=g94.t1 >*************** >*** 3397 **** >! chrI AUGUSTUS three_prime_utr 621736 621860 0.46 + . Parent=g94.t1 >--- 3397 ---- >! chrI AUGUSTUS three_prime_utr 621736 621860 0.47 + . Parent=g94.t1 >*************** >*** 3415,3416 **** >! chrI AUGUSTUS gene 621920 623160 0.16 + . ID=g95 >! chrI AUGUSTUS transcript 621920 623160 0.16 + . ID=g95.t1;Parent=g95 >--- 3415,3416 ---- >! chrI AUGUSTUS gene 621920 623160 0.18 + . ID=g95 >! chrI AUGUSTUS transcript 621920 623160 0.18 + . ID=g95.t1;Parent=g95 >*************** >*** 3418 **** >! chrI AUGUSTUS five_prime_utr 621920 621957 0.26 + . Parent=g95.t1 >--- 3418 ---- >! chrI AUGUSTUS five_prime_utr 621920 621957 0.3 + . Parent=g95.t1 >*************** >*** 3420,3423 **** >! chrI AUGUSTUS intron 622016 622318 0.56 + . Parent=g95.t1 >! chrI AUGUSTUS intron 622631 622893 1 + . Parent=g95.t1 >! chrI AUGUSTUS CDS 621958 622015 0.47 + 0 ID=g95.t1.cds;Parent=g95.t1 >! chrI AUGUSTUS CDS 622319 622630 0.56 + 2 ID=g95.t1.cds;Parent=g95.t1 >--- 3420,3423 ---- >! chrI AUGUSTUS intron 622016 622318 0.52 + . Parent=g95.t1 >! chrI AUGUSTUS intron 622631 622893 0.99 + . Parent=g95.t1 >! chrI AUGUSTUS CDS 621958 622015 0.43 + 0 ID=g95.t1.cds;Parent=g95.t1 >! chrI AUGUSTUS CDS 622319 622630 0.52 + 2 ID=g95.t1.cds;Parent=g95.t1 >*************** >*** 3426 **** >! chrI AUGUSTUS three_prime_utr 623118 623160 0.67 + . Parent=g95.t1 >--- 3426 ---- >! chrI AUGUSTUS three_prime_utr 623118 623160 0.72 + . Parent=g95.t1 >*************** >*** 3443,3444 **** >! chrI AUGUSTUS gene 623176 628369 0.42 - . ID=g96 >! chrI AUGUSTUS transcript 623176 628369 0.42 - . ID=g96.t1;Parent=g96 >--- 3443,3444 ---- >! chrI AUGUSTUS gene 623176 628369 0.39 - . ID=g96 >! chrI AUGUSTUS transcript 623176 628369 0.39 - . ID=g96.t1;Parent=g96 >*************** >*** 3446 **** >! chrI AUGUSTUS three_prime_utr 623176 623360 0.8 - . Parent=g96.t1 >--- 3446 ---- >! chrI AUGUSTUS three_prime_utr 623176 623360 0.78 - . Parent=g96.t1 >*************** >*** 3448,3449 **** >! chrI AUGUSTUS intron 623430 623644 0.76 - . Parent=g96.t1 >! chrI AUGUSTUS intron 623957 624015 0.99 - . Parent=g96.t1 >--- 3448,3449 ---- >! chrI AUGUSTUS intron 623430 623644 0.8 - . Parent=g96.t1 >! chrI AUGUSTUS intron 623957 624015 1 - . Parent=g96.t1 >*************** >*** 3455,3456 **** >! chrI AUGUSTUS CDS 623645 623956 0.76 - 0 ID=g96.t1.cds;Parent=g96.t1 >! chrI AUGUSTUS CDS 624016 624544 0.99 - 1 ID=g96.t1.cds;Parent=g96.t1 >--- 3455,3456 ---- >! chrI AUGUSTUS CDS 623645 623956 0.8 - 0 ID=g96.t1.cds;Parent=g96.t1 >! chrI AUGUSTUS CDS 624016 624544 1 - 1 ID=g96.t1.cds;Parent=g96.t1 >*************** >*** 3462 **** >! chrI AUGUSTUS five_prime_utr 628114 628369 0.68 - . Parent=g96.t1 >--- 3462 ---- >! chrI AUGUSTUS five_prime_utr 628114 628369 0.65 - . Parent=g96.t1 >*************** >*** 3485,3486 **** >! chrI AUGUSTUS gene 628650 630504 0.1 + . ID=g97 >! chrI AUGUSTUS transcript 628650 630504 0.1 + . ID=g97.t1;Parent=g97 >--- 3485,3486 ---- >! chrI AUGUSTUS gene 628650 630504 0.15 + . ID=g97 >! chrI AUGUSTUS transcript 628650 630504 0.15 + . ID=g97.t1;Parent=g97 >*************** >*** 3488 **** >! chrI AUGUSTUS five_prime_utr 628650 628681 0.16 + . Parent=g97.t1 >--- 3488 ---- >! chrI AUGUSTUS five_prime_utr 628650 628681 0.25 + . Parent=g97.t1 >*************** >*** 3490,3495 **** >! chrI AUGUSTUS intron 628726 629746 0.46 + . Parent=g97.t1 >! chrI AUGUSTUS intron 629848 629948 0.77 + . Parent=g97.t1 >! chrI AUGUSTUS intron 630079 630126 0.85 + . Parent=g97.t1 >! chrI AUGUSTUS intron 630161 630204 0.85 + . Parent=g97.t1 >! chrI AUGUSTUS intron 630271 630325 1 + . Parent=g97.t1 >! chrI AUGUSTUS CDS 628682 628725 0.43 + 0 ID=g97.t1.cds;Parent=g97.t1 >--- 3490,3495 ---- >! chrI AUGUSTUS intron 628726 629746 0.43 + . Parent=g97.t1 >! chrI AUGUSTUS intron 629848 629948 0.8 + . Parent=g97.t1 >! chrI AUGUSTUS intron 630079 630126 0.87 + . Parent=g97.t1 >! chrI AUGUSTUS intron 630161 630204 0.86 + . Parent=g97.t1 >! chrI AUGUSTUS intron 630271 630325 0.98 + . Parent=g97.t1 >! chrI AUGUSTUS CDS 628682 628725 0.41 + 0 ID=g97.t1.cds;Parent=g97.t1 >*************** >*** 3497,3499 **** >! chrI AUGUSTUS CDS 629949 630078 1 + 2 ID=g97.t1.cds;Parent=g97.t1 >! chrI AUGUSTUS CDS 630127 630160 0.85 + 1 ID=g97.t1.cds;Parent=g97.t1 >! chrI AUGUSTUS CDS 630205 630270 0.85 + 0 ID=g97.t1.cds;Parent=g97.t1 >--- 3497,3499 ---- >! chrI AUGUSTUS CDS 629949 630078 0.98 + 2 ID=g97.t1.cds;Parent=g97.t1 >! chrI AUGUSTUS CDS 630127 630160 0.87 + 1 ID=g97.t1.cds;Parent=g97.t1 >! chrI AUGUSTUS CDS 630205 630270 0.86 + 0 ID=g97.t1.cds;Parent=g97.t1 >*************** >*** 3502 **** >! chrI AUGUSTUS three_prime_utr 630437 630504 0.78 + . Parent=g97.t1 >--- 3502 ---- >! chrI AUGUSTUS three_prime_utr 630437 630504 0.84 + . Parent=g97.t1 >*************** >*** 3518,3519 **** >! chrI AUGUSTUS gene 630580 637456 0.04 + . ID=g98 >! chrI AUGUSTUS transcript 630580 637456 0.04 + . ID=g98.t1;Parent=g98 >--- 3518,3519 ---- >! chrI AUGUSTUS gene 630580 637456 0.03 + . ID=g98 >! chrI AUGUSTUS transcript 630580 637456 0.03 + . ID=g98.t1;Parent=g98 >*************** >*** 3521 **** >! chrI AUGUSTUS five_prime_utr 630580 630623 0.86 + . Parent=g98.t1 >--- 3521 ---- >! chrI AUGUSTUS five_prime_utr 630580 630623 0.78 + . Parent=g98.t1 >*************** >*** 3524,3527 **** >! chrI AUGUSTUS intron 631164 631208 1 + . Parent=g98.t1 >! chrI AUGUSTUS intron 631427 632040 0.29 + . Parent=g98.t1 >! chrI AUGUSTUS intron 632106 632428 0.17 + . Parent=g98.t1 >! chrI AUGUSTUS intron 632515 632969 0.78 + . Parent=g98.t1 >--- 3524,3527 ---- >! chrI AUGUSTUS intron 631164 631208 0.99 + . Parent=g98.t1 >! chrI AUGUSTUS intron 631427 632040 0.23 + . Parent=g98.t1 >! chrI AUGUSTUS intron 632106 632428 0.16 + . Parent=g98.t1 >! chrI AUGUSTUS intron 632515 632969 0.83 + . Parent=g98.t1 >*************** >*** 3529 **** >! chrI AUGUSTUS intron 633968 634338 1 + . Parent=g98.t1 >--- 3529 ---- >! chrI AUGUSTUS intron 633968 634338 0.99 + . Parent=g98.t1 >*************** >*** 3534,3537 **** >! chrI AUGUSTUS CDS 631039 631163 1 + 2 ID=g98.t1.cds;Parent=g98.t1 >! chrI AUGUSTUS CDS 631209 631426 0.78 + 0 ID=g98.t1.cds;Parent=g98.t1 >! chrI AUGUSTUS CDS 632041 632105 0.25 + 1 ID=g98.t1.cds;Parent=g98.t1 >! chrI AUGUSTUS CDS 632429 632514 0.37 + 2 ID=g98.t1.cds;Parent=g98.t1 >--- 3534,3537 ---- >! chrI AUGUSTUS CDS 631039 631163 0.99 + 2 ID=g98.t1.cds;Parent=g98.t1 >! chrI AUGUSTUS CDS 631209 631426 0.77 + 0 ID=g98.t1.cds;Parent=g98.t1 >! chrI AUGUSTUS CDS 632041 632105 0.21 + 1 ID=g98.t1.cds;Parent=g98.t1 >! chrI AUGUSTUS CDS 632429 632514 0.43 + 2 ID=g98.t1.cds;Parent=g98.t1 >*************** >*** 3539 **** >! chrI AUGUSTUS CDS 633686 633967 1 + 1 ID=g98.t1.cds;Parent=g98.t1 >--- 3539 ---- >! chrI AUGUSTUS CDS 633686 633967 0.99 + 1 ID=g98.t1.cds;Parent=g98.t1 >*************** >*** 3543 **** >! chrI AUGUSTUS CDS 637189 637417 0.27 + 1 ID=g98.t1.cds;Parent=g98.t1 >--- 3543 ---- >! chrI AUGUSTUS CDS 637189 637417 0.33 + 1 ID=g98.t1.cds;Parent=g98.t1 >*************** >*** 3545 **** >! chrI AUGUSTUS three_prime_utr 637418 637456 0.21 + . Parent=g98.t1 >--- 3545 ---- >! chrI AUGUSTUS three_prime_utr 637418 637456 0.25 + . Parent=g98.t1 >*************** >*** 3565,3566 **** >! chrI AUGUSTUS gene 642710 643779 0.54 + . ID=g99 >! chrI AUGUSTUS transcript 642710 643779 0.54 + . ID=g99.t1;Parent=g99 >--- 3565,3566 ---- >! chrI AUGUSTUS gene 642710 643779 0.5 + . ID=g99 >! chrI AUGUSTUS transcript 642710 643779 0.5 + . ID=g99.t1;Parent=g99 >*************** >*** 3568 **** >! chrI AUGUSTUS five_prime_utr 642710 642740 0.57 + . Parent=g99.t1 >--- 3568 ---- >! chrI AUGUSTUS five_prime_utr 642710 642740 0.54 + . Parent=g99.t1 >*************** >*** 3577 **** >! chrI AUGUSTUS CDS 643129 643314 0.99 + 0 ID=g99.t1.cds;Parent=g99.t1 >--- 3577 ---- >! chrI AUGUSTUS CDS 643129 643314 0.98 + 0 ID=g99.t1.cds;Parent=g99.t1 >*************** >*** 3580 **** >! chrI AUGUSTUS three_prime_utr 643705 643779 0.96 + . Parent=g99.t1 >--- 3580 ---- >! chrI AUGUSTUS three_prime_utr 643705 643779 0.93 + . Parent=g99.t1 >*************** >*** 3596,3597 **** >! chrI AUGUSTUS gene 645270 648079 0.62 - . ID=g100 >! chrI AUGUSTUS transcript 645270 648079 0.62 - . ID=g100.t1;Parent=g100 >--- 3596,3597 ---- >! chrI AUGUSTUS gene 645270 648079 0.5 - . ID=g100 >! chrI AUGUSTUS transcript 645270 648079 0.5 - . ID=g100.t1;Parent=g100 >*************** >*** 3609 **** >! chrI AUGUSTUS five_prime_utr 648040 648079 0.64 - . Parent=g100.t1 >--- 3609 ---- >! chrI AUGUSTUS five_prime_utr 648040 648079 0.52 - . Parent=g100.t1 >*************** >*** 3627,3628 **** >! chrI AUGUSTUS gene 650656 656119 0.06 - . ID=g101 >! chrI AUGUSTUS transcript 650656 656119 0.06 - . ID=g101.t1;Parent=g101 >--- 3627,3628 ---- >! chrI AUGUSTUS gene 650656 656119 0.05 - . ID=g101 >! chrI AUGUSTUS transcript 650656 656119 0.05 - . ID=g101.t1;Parent=g101 >*************** >*** 3630 **** >! chrI AUGUSTUS three_prime_utr 650656 650737 0.66 - . Parent=g101.t1 >--- 3630 ---- >! chrI AUGUSTUS three_prime_utr 650656 650737 0.5 - . Parent=g101.t1 >*************** >*** 3632,3639 **** >! chrI AUGUSTUS intron 650815 650860 0.83 - . Parent=g101.t1 >! chrI AUGUSTUS intron 650988 651186 0.63 - . Parent=g101.t1 >! chrI AUGUSTUS intron 651449 651491 0.96 - . Parent=g101.t1 >! chrI AUGUSTUS intron 651623 656054 0.08 - . Parent=g101.t1 >! chrI AUGUSTUS CDS 650738 650814 0.83 - 2 ID=g101.t1.cds;Parent=g101.t1 >! chrI AUGUSTUS CDS 650861 650987 0.64 - 0 ID=g101.t1.cds;Parent=g101.t1 >! chrI AUGUSTUS CDS 651187 651448 0.74 - 1 ID=g101.t1.cds;Parent=g101.t1 >! chrI AUGUSTUS CDS 651492 651622 0.14 - 0 ID=g101.t1.cds;Parent=g101.t1 >--- 3632,3639 ---- >! chrI AUGUSTUS intron 650815 650860 0.77 - . Parent=g101.t1 >! chrI AUGUSTUS intron 650988 651186 0.62 - . Parent=g101.t1 >! chrI AUGUSTUS intron 651449 651491 0.91 - . Parent=g101.t1 >! chrI AUGUSTUS intron 651623 656054 0.11 - . Parent=g101.t1 >! chrI AUGUSTUS CDS 650738 650814 0.78 - 2 ID=g101.t1.cds;Parent=g101.t1 >! chrI AUGUSTUS CDS 650861 650987 0.63 - 0 ID=g101.t1.cds;Parent=g101.t1 >! chrI AUGUSTUS CDS 651187 651448 0.73 - 1 ID=g101.t1.cds;Parent=g101.t1 >! chrI AUGUSTUS CDS 651492 651622 0.12 - 0 ID=g101.t1.cds;Parent=g101.t1 >*************** >*** 3642 **** >! chrI AUGUSTUS five_prime_utr 656082 656119 0.13 - . Parent=g101.t1 >--- 3642 ---- >! chrI AUGUSTUS five_prime_utr 656082 656119 0.12 - . Parent=g101.t1 >*************** >*** 3662 **** >! chrI AUGUSTUS five_prime_utr 663120 663176 0.31 + . Parent=g102.t1 >--- 3662 ---- >! chrI AUGUSTUS five_prime_utr 663120 663176 0.26 + . Parent=g102.t1 >*************** >*** 3664,3668 **** >! chrI AUGUSTUS intron 663200 663717 0.23 + . Parent=g102.t1 >! chrI AUGUSTUS intron 663828 664930 0.22 + . Parent=g102.t1 >! chrI AUGUSTUS CDS 663177 663199 0.3 + 0 ID=g102.t1.cds;Parent=g102.t1 >! chrI AUGUSTUS CDS 663718 663827 0.23 + 1 ID=g102.t1.cds;Parent=g102.t1 >! chrI AUGUSTUS CDS 664931 665010 0.4 + 2 ID=g102.t1.cds;Parent=g102.t1 >--- 3664,3668 ---- >! chrI AUGUSTUS intron 663200 663717 0.26 + . Parent=g102.t1 >! chrI AUGUSTUS intron 663828 664930 0.26 + . Parent=g102.t1 >! chrI AUGUSTUS CDS 663177 663199 0.28 + 0 ID=g102.t1.cds;Parent=g102.t1 >! chrI AUGUSTUS CDS 663718 663827 0.26 + 1 ID=g102.t1.cds;Parent=g102.t1 >! chrI AUGUSTUS CDS 664931 665010 0.35 + 2 ID=g102.t1.cds;Parent=g102.t1 >*************** >*** 3670 **** >! chrI AUGUSTUS three_prime_utr 665011 665263 0.8 + . Parent=g102.t1 >--- 3670 ---- >! chrI AUGUSTUS three_prime_utr 665011 665263 0.72 + . Parent=g102.t1 >*************** >*** 3686,3687 **** >! chrI AUGUSTUS gene 668040 672438 0.07 + . ID=g103 >! chrI AUGUSTUS transcript 668040 672438 0.07 + . ID=g103.t1;Parent=g103 >--- 3686,3687 ---- >! chrI AUGUSTUS gene 668040 672438 0.15 + . ID=g103 >! chrI AUGUSTUS transcript 668040 672438 0.15 + . ID=g103.t1;Parent=g103 >*************** >*** 3689 **** >! chrI AUGUSTUS five_prime_utr 668040 668168 0.4 + . Parent=g103.t1 >--- 3689 ---- >! chrI AUGUSTUS five_prime_utr 668040 668168 0.47 + . Parent=g103.t1 >*************** >*** 3691 **** >! chrI AUGUSTUS intron 668261 668408 0.99 + . Parent=g103.t1 >--- 3691 ---- >! chrI AUGUSTUS intron 668261 668408 0.98 + . Parent=g103.t1 >*************** >*** 3693 **** >! chrI AUGUSTUS intron 669213 669631 0.99 + . Parent=g103.t1 >--- 3693 ---- >! chrI AUGUSTUS intron 669213 669631 0.97 + . Parent=g103.t1 >*************** >*** 3698 **** >! chrI AUGUSTUS CDS 668169 668260 0.96 + 0 ID=g103.t1.cds;Parent=g103.t1 >--- 3698 ---- >! chrI AUGUSTUS CDS 668169 668260 0.97 + 0 ID=g103.t1.cds;Parent=g103.t1 >*************** >*** 3701 **** >! chrI AUGUSTUS CDS 669632 669748 0.77 + 0 ID=g103.t1.cds;Parent=g103.t1 >--- 3701 ---- >! chrI AUGUSTUS CDS 669632 669748 0.76 + 0 ID=g103.t1.cds;Parent=g103.t1 >*************** >*** 3707 **** >! chrI AUGUSTUS three_prime_utr 672013 672438 0.43 + . Parent=g103.t1 >--- 3707 ---- >! chrI AUGUSTUS three_prime_utr 672013 672438 0.41 + . Parent=g103.t1 >*************** >*** 3726,3727 **** >! chrI AUGUSTUS gene 672943 682759 0.1 - . ID=g104 >! chrI AUGUSTUS transcript 672943 682759 0.1 - . ID=g104.t1;Parent=g104 >--- 3726,3727 ---- >! chrI AUGUSTUS gene 672943 682759 0.15 - . ID=g104 >! chrI AUGUSTUS transcript 672943 682759 0.15 - . ID=g104.t1;Parent=g104 >*************** >*** 3729 **** >! chrI AUGUSTUS three_prime_utr 672943 673245 0.75 - . Parent=g104.t1 >--- 3729 ---- >! chrI AUGUSTUS three_prime_utr 672943 673245 0.73 - . Parent=g104.t1 >*************** >*** 3732 **** >! chrI AUGUSTUS intron 674466 674643 0.95 - . Parent=g104.t1 >--- 3732 ---- >! chrI AUGUSTUS intron 674466 674643 0.99 - . Parent=g104.t1 >*************** >*** 3738,3740 **** >! chrI AUGUSTUS intron 679330 679801 0.87 - . Parent=g104.t1 >! chrI AUGUSTUS intron 679892 680555 0.86 - . Parent=g104.t1 >! chrI AUGUSTUS intron 680667 682534 0.96 - . Parent=g104.t1 >--- 3738,3740 ---- >! chrI AUGUSTUS intron 679330 679801 0.83 - . Parent=g104.t1 >! chrI AUGUSTUS intron 679892 680555 0.91 - . Parent=g104.t1 >! chrI AUGUSTUS intron 680667 682534 0.99 - . Parent=g104.t1 >*************** >*** 3743 **** >! chrI AUGUSTUS CDS 674644 674887 0.95 - 0 ID=g104.t1.cds;Parent=g104.t1 >--- 3743 ---- >! chrI AUGUSTUS CDS 674644 674887 0.99 - 0 ID=g104.t1.cds;Parent=g104.t1 >*************** >*** 3749,3751 **** >! chrI AUGUSTUS CDS 679802 679891 0.94 - 0 ID=g104.t1.cds;Parent=g104.t1 >! chrI AUGUSTUS CDS 680556 680666 0.9 - 0 ID=g104.t1.cds;Parent=g104.t1 >! chrI AUGUSTUS CDS 682535 682729 0.81 - 0 ID=g104.t1.cds;Parent=g104.t1 >--- 3749,3751 ---- >! chrI AUGUSTUS CDS 679802 679891 0.97 - 0 ID=g104.t1.cds;Parent=g104.t1 >! chrI AUGUSTUS CDS 680556 680666 0.91 - 0 ID=g104.t1.cds;Parent=g104.t1 >! chrI AUGUSTUS CDS 682535 682729 0.92 - 0 ID=g104.t1.cds;Parent=g104.t1 >*************** >*** 3753 **** >! chrI AUGUSTUS five_prime_utr 682730 682759 0.24 - . Parent=g104.t1 >--- 3753 ---- >! chrI AUGUSTUS five_prime_utr 682730 682759 0.33 - . Parent=g104.t1 >*************** >*** 3776,3777 **** >! chrI AUGUSTUS gene 686642 689467 0.37 - . ID=g105 >! chrI AUGUSTUS transcript 686642 689467 0.37 - . ID=g105.t1;Parent=g105 >--- 3776,3777 ---- >! chrI AUGUSTUS gene 686642 689467 0.29 - . ID=g105 >! chrI AUGUSTUS transcript 686642 689467 0.29 - . ID=g105.t1;Parent=g105 >*************** >*** 3779 **** >! chrI AUGUSTUS three_prime_utr 686642 686698 1 - . Parent=g105.t1 >--- 3779 ---- >! chrI AUGUSTUS three_prime_utr 686642 686698 0.95 - . Parent=g105.t1 >*************** >*** 3782,3783 **** >! chrI AUGUSTUS intron 687895 687950 0.64 - . Parent=g105.t1 >! chrI AUGUSTUS intron 687975 689086 0.64 - . Parent=g105.t1 >--- 3782,3783 ---- >! chrI AUGUSTUS intron 687895 687950 0.67 - . Parent=g105.t1 >! chrI AUGUSTUS intron 687975 689086 0.67 - . Parent=g105.t1 >*************** >*** 3787 **** >! chrI AUGUSTUS CDS 687951 687974 0.64 - 2 ID=g105.t1.cds;Parent=g105.t1 >--- 3787 ---- >! chrI AUGUSTUS CDS 687951 687974 0.67 - 2 ID=g105.t1.cds;Parent=g105.t1 >*************** >*** 3791 **** >! chrI AUGUSTUS five_prime_utr 689417 689467 0.54 - . Parent=g105.t1 >--- 3791 ---- >! chrI AUGUSTUS five_prime_utr 689417 689467 0.45 - . Parent=g105.t1 >*************** >*** 3809,3810 **** >! chrI AUGUSTUS gene 692078 692518 0.63 + . ID=g106 >! chrI AUGUSTUS transcript 692078 692518 0.63 + . ID=g106.t1;Parent=g106 >--- 3809,3810 ---- >! chrI AUGUSTUS gene 692078 692518 0.68 + . ID=g106 >! chrI AUGUSTUS transcript 692078 692518 0.68 + . ID=g106.t1;Parent=g106 >*************** >*** 3812 **** >! chrI AUGUSTUS five_prime_utr 692078 692109 0.96 + . Parent=g106.t1 >--- 3812 ---- >! chrI AUGUSTUS five_prime_utr 692078 692109 0.98 + . Parent=g106.t1 >*************** >*** 3816 **** >! chrI AUGUSTUS three_prime_utr 692401 692518 0.66 + . Parent=g106.t1 >--- 3816 ---- >! chrI AUGUSTUS three_prime_utr 692401 692518 0.69 + . Parent=g106.t1 >*************** >*** 3831,3832 **** >! chrI AUGUSTUS gene 692578 694218 0.11 + . ID=g107 >! chrI AUGUSTUS transcript 692578 694218 0.11 + . ID=g107.t1;Parent=g107 >--- 3831,3832 ---- >! chrI AUGUSTUS gene 692578 694218 0.16 + . ID=g107 >! chrI AUGUSTUS transcript 692578 694218 0.16 + . ID=g107.t1;Parent=g107 >*************** >*** 3834 **** >! chrI AUGUSTUS five_prime_utr 692578 692757 0.29 + . Parent=g107.t1 >--- 3834 ---- >! chrI AUGUSTUS five_prime_utr 692578 692757 0.37 + . Parent=g107.t1 >*************** >*** 3838 **** >! chrI AUGUSTUS intron 693130 693175 0.67 + . Parent=g107.t1 >--- 3838 ---- >! chrI AUGUSTUS intron 693130 693175 0.69 + . Parent=g107.t1 >*************** >*** 3840,3841 **** >! chrI AUGUSTUS intron 693643 693727 0.86 + . Parent=g107.t1 >! chrI AUGUSTUS CDS 692758 692825 0.99 + 0 ID=g107.t1.cds;Parent=g107.t1 >--- 3840,3841 ---- >! chrI AUGUSTUS intron 693643 693727 0.79 + . Parent=g107.t1 >! chrI AUGUSTUS CDS 692758 692825 0.98 + 0 ID=g107.t1.cds;Parent=g107.t1 >*************** >*** 3843,3845 **** >! chrI AUGUSTUS CDS 693043 693129 0.67 + 0 ID=g107.t1.cds;Parent=g107.t1 >! chrI AUGUSTUS CDS 693176 693292 0.67 + 0 ID=g107.t1.cds;Parent=g107.t1 >! chrI AUGUSTUS CDS 693353 693642 0.87 + 0 ID=g107.t1.cds;Parent=g107.t1 >--- 3843,3845 ---- >! chrI AUGUSTUS CDS 693043 693129 0.69 + 0 ID=g107.t1.cds;Parent=g107.t1 >! chrI AUGUSTUS CDS 693176 693292 0.69 + 0 ID=g107.t1.cds;Parent=g107.t1 >! chrI AUGUSTUS CDS 693353 693642 0.8 + 0 ID=g107.t1.cds;Parent=g107.t1 >*************** >*** 3848 **** >! chrI AUGUSTUS three_prime_utr 694086 694218 0.8 + . Parent=g107.t1 >--- 3848 ---- >! chrI AUGUSTUS three_prime_utr 694086 694218 0.68 + . Parent=g107.t1 >*************** >*** 3866,3867 **** >! chrI AUGUSTUS gene 697278 699999 0.52 + . ID=g108 >! chrI AUGUSTUS transcript 697278 699999 0.52 + . ID=g108.t1;Parent=g108 >--- 3866,3867 ---- >! chrI AUGUSTUS gene 697278 699999 0.54 + . ID=g108 >! chrI AUGUSTUS transcript 697278 699999 0.54 + . ID=g108.t1;Parent=g108 >*************** >*** 3869 **** >! chrI AUGUSTUS five_prime_utr 697278 697440 0.83 + . Parent=g108.t1 >--- 3869 ---- >! chrI AUGUSTUS five_prime_utr 697278 697440 0.72 + . Parent=g108.t1 >*************** >*** 3872 **** >! chrI AUGUSTUS intron 697682 698041 0.84 + . Parent=g108.t1 >--- 3872 ---- >! chrI AUGUSTUS intron 697682 698041 0.89 + . Parent=g108.t1 >*************** >*** 3874,3876 **** >! chrI AUGUSTUS intron 698929 698976 1 + . Parent=g108.t1 >! chrI AUGUSTUS intron 699089 699551 1 + . Parent=g108.t1 >! chrI AUGUSTUS intron 699760 699812 0.99 + . Parent=g108.t1 >--- 3874,3876 ---- >! chrI AUGUSTUS intron 698929 698976 0.98 + . Parent=g108.t1 >! chrI AUGUSTUS intron 699089 699551 0.99 + . Parent=g108.t1 >! chrI AUGUSTUS intron 699760 699812 1 + . Parent=g108.t1 >*************** >*** 3878,3881 **** >! chrI AUGUSTUS CDS 697626 697681 0.98 + 0 ID=g108.t1.cds;Parent=g108.t1 >! chrI AUGUSTUS CDS 698042 698330 0.85 + 1 ID=g108.t1.cds;Parent=g108.t1 >! chrI AUGUSTUS CDS 698835 698928 1 + 0 ID=g108.t1.cds;Parent=g108.t1 >! chrI AUGUSTUS CDS 698977 699088 1 + 2 ID=g108.t1.cds;Parent=g108.t1 >--- 3878,3881 ---- >! chrI AUGUSTUS CDS 697626 697681 1 + 0 ID=g108.t1.cds;Parent=g108.t1 >! chrI AUGUSTUS CDS 698042 698330 0.89 + 1 ID=g108.t1.cds;Parent=g108.t1 >! chrI AUGUSTUS CDS 698835 698928 0.98 + 0 ID=g108.t1.cds;Parent=g108.t1 >! chrI AUGUSTUS CDS 698977 699088 0.98 + 2 ID=g108.t1.cds;Parent=g108.t1 >*************** >*** 3883 **** >! chrI AUGUSTUS CDS 699813 699956 0.93 + 0 ID=g108.t1.cds;Parent=g108.t1 >--- 3883 ---- >! chrI AUGUSTUS CDS 699813 699956 0.92 + 0 ID=g108.t1.cds;Parent=g108.t1 >*************** >*** 3885 **** >! chrI AUGUSTUS three_prime_utr 699957 699999 0.74 + . Parent=g108.t1 >--- 3885 ---- >! chrI AUGUSTUS three_prime_utr 699957 699999 0.83 + . Parent=g108.t1 >*************** >*** 3903,3904 **** >! chrI AUGUSTUS gene 700408 702212 0.21 + . ID=g109 >! chrI AUGUSTUS transcript 700408 702212 0.21 + . ID=g109.t1;Parent=g109 >--- 3903,3904 ---- >! chrI AUGUSTUS gene 700408 702212 0.24 + . ID=g109 >! chrI AUGUSTUS transcript 700408 702212 0.24 + . ID=g109.t1;Parent=g109 >*************** >*** 3906 **** >! chrI AUGUSTUS five_prime_utr 700408 700504 0.52 + . Parent=g109.t1 >--- 3906 ---- >! chrI AUGUSTUS five_prime_utr 700408 700504 0.53 + . Parent=g109.t1 >*************** >*** 3908,3909 **** >! chrI AUGUSTUS intron 700604 700884 0.94 + . Parent=g109.t1 >! chrI AUGUSTUS intron 701683 701730 0.73 + . Parent=g109.t1 >--- 3908,3909 ---- >! chrI AUGUSTUS intron 700604 700884 0.93 + . Parent=g109.t1 >! chrI AUGUSTUS intron 701683 701730 0.81 + . Parent=g109.t1 >*************** >*** 3911,3913 **** >! chrI AUGUSTUS CDS 700505 700603 0.83 + 0 ID=g109.t1.cds;Parent=g109.t1 >! chrI AUGUSTUS CDS 700885 701682 0.69 + 0 ID=g109.t1.cds;Parent=g109.t1 >! chrI AUGUSTUS CDS 701731 701943 0.73 + 0 ID=g109.t1.cds;Parent=g109.t1 >--- 3911,3913 ---- >! chrI AUGUSTUS CDS 700505 700603 0.84 + 0 ID=g109.t1.cds;Parent=g109.t1 >! chrI AUGUSTUS CDS 700885 701682 0.77 + 0 ID=g109.t1.cds;Parent=g109.t1 >! chrI AUGUSTUS CDS 701731 701943 0.81 + 0 ID=g109.t1.cds;Parent=g109.t1 >*************** >*** 3916 **** >! chrI AUGUSTUS three_prime_utr 702084 702212 0.54 + . Parent=g109.t1 >--- 3916 ---- >! chrI AUGUSTUS three_prime_utr 702084 702212 0.59 + . Parent=g109.t1 >*************** >*** 3934,3935 **** >! chrI AUGUSTUS gene 707228 717547 0.26 + . ID=g110 >! chrI AUGUSTUS transcript 707228 717547 0.26 + . ID=g110.t1;Parent=g110 >--- 3934,3935 ---- >! chrI AUGUSTUS gene 707228 717547 0.18 + . ID=g110 >! chrI AUGUSTUS transcript 707228 717547 0.18 + . ID=g110.t1;Parent=g110 >*************** >*** 3939,3942 **** >! chrI AUGUSTUS intron 707405 708102 0.46 + . Parent=g110.t1 >! chrI AUGUSTUS intron 708208 709920 1 + . Parent=g110.t1 >! chrI AUGUSTUS intron 710068 711121 0.93 + . Parent=g110.t1 >! chrI AUGUSTUS intron 711407 712439 0.82 + . Parent=g110.t1 >--- 3939,3942 ---- >! chrI AUGUSTUS intron 707405 708102 0.44 + . Parent=g110.t1 >! chrI AUGUSTUS intron 708208 709920 0.99 + . Parent=g110.t1 >! chrI AUGUSTUS intron 710068 711121 0.91 + . Parent=g110.t1 >! chrI AUGUSTUS intron 711407 712439 0.7 + . Parent=g110.t1 >*************** >*** 3944 **** >! chrI AUGUSTUS intron 714074 714120 1 + . Parent=g110.t1 >--- 3944 ---- >! chrI AUGUSTUS intron 714074 714120 0.99 + . Parent=g110.t1 >*************** >*** 3946,3952 **** >! chrI AUGUSTUS intron 715056 717230 0.95 + . Parent=g110.t1 >! chrI AUGUSTUS CDS 707348 707404 0.46 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 708103 708207 0.97 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 709921 710067 0.99 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 711122 711406 0.82 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 712440 712549 0.82 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 713852 714073 1 + 1 ID=g110.t1.cds;Parent=g110.t1 >--- 3946,3952 ---- >! chrI AUGUSTUS intron 715056 717230 0.94 + . Parent=g110.t1 >! chrI AUGUSTUS CDS 707348 707404 0.44 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 708103 708207 0.95 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 709921 710067 0.98 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 711122 711406 0.7 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 712440 712549 0.7 + 0 ID=g110.t1.cds;Parent=g110.t1 >! chrI AUGUSTUS CDS 713852 714073 0.99 + 1 ID=g110.t1.cds;Parent=g110.t1 >*************** >*** 3954 **** >! chrI AUGUSTUS CDS 714729 715055 0.92 + 0 ID=g110.t1.cds;Parent=g110.t1 >--- 3954 ---- >! chrI AUGUSTUS CDS 714729 715055 0.96 + 0 ID=g110.t1.cds;Parent=g110.t1 >*************** >*** 3957 **** >! chrI AUGUSTUS three_prime_utr 717357 717547 0.93 + . Parent=g110.t1 >--- 3957 ---- >! chrI AUGUSTUS three_prime_utr 717357 717547 0.88 + . Parent=g110.t1 >*************** >*** 3977,3978 **** >! chrI AUGUSTUS gene 718026 726827 0.12 - . ID=g111 >! chrI AUGUSTUS transcript 718026 726827 0.12 - . ID=g111.t1;Parent=g111 >--- 3977,3978 ---- >! chrI AUGUSTUS gene 718026 726827 0.13 - . ID=g111 >! chrI AUGUSTUS transcript 718026 726827 0.13 - . ID=g111.t1;Parent=g111 >*************** >*** 3980 **** >! chrI AUGUSTUS three_prime_utr 718026 718128 0.27 - . Parent=g111.t1 >--- 3980 ---- >! chrI AUGUSTUS three_prime_utr 718026 718128 0.31 - . Parent=g111.t1 >*************** >*** 3982,3983 **** >! chrI AUGUSTUS intron 718331 719104 1 - . Parent=g111.t1 >! chrI AUGUSTUS intron 719269 720670 0.93 - . Parent=g111.t1 >--- 3982,3983 ---- >! chrI AUGUSTUS intron 718331 719104 0.99 - . Parent=g111.t1 >! chrI AUGUSTUS intron 719269 720670 0.96 - . Parent=g111.t1 >*************** >*** 3987 **** >! chrI AUGUSTUS intron 725403 725758 0.99 - . Parent=g111.t1 >--- 3987 ---- >! chrI AUGUSTUS intron 725403 725758 1 - . Parent=g111.t1 >*************** >*** 3989 **** >! chrI AUGUSTUS intron 726072 726139 0.86 - . Parent=g111.t1 >--- 3989 ---- >! chrI AUGUSTUS intron 726072 726139 0.9 - . Parent=g111.t1 >*************** >*** 3993 **** >! chrI AUGUSTUS CDS 719105 719268 0.94 - 0 ID=g111.t1.cds;Parent=g111.t1 >--- 3993 ---- >! chrI AUGUSTUS CDS 719105 719268 0.95 - 0 ID=g111.t1.cds;Parent=g111.t1 >*************** >*** 3999,4000 **** >! chrI AUGUSTUS CDS 725987 726071 0.88 - 2 ID=g111.t1.cds;Parent=g111.t1 >! chrI AUGUSTUS CDS 726140 726267 0.98 - 1 ID=g111.t1.cds;Parent=g111.t1 >--- 3999,4000 ---- >! chrI AUGUSTUS CDS 725987 726071 0.9 - 2 ID=g111.t1.cds;Parent=g111.t1 >! chrI AUGUSTUS CDS 726140 726267 1 - 1 ID=g111.t1.cds;Parent=g111.t1 >*************** >*** 4004 **** >! chrI AUGUSTUS five_prime_utr 726653 726827 0.35 - . Parent=g111.t1 >--- 4004 ---- >! chrI AUGUSTUS five_prime_utr 726653 726827 0.39 - . Parent=g111.t1 >*************** >*** 4026,4027 **** >! chrI AUGUSTUS gene 726978 727385 0.38 + . ID=g112 >! chrI AUGUSTUS transcript 726978 727385 0.38 + . ID=g112.t1;Parent=g112 >--- 4026,4027 ---- >! chrI AUGUSTUS gene 726978 727385 0.3 + . ID=g112 >! chrI AUGUSTUS transcript 726978 727385 0.3 + . ID=g112.t1;Parent=g112 >*************** >*** 4029 **** >! chrI AUGUSTUS five_prime_utr 726978 727018 0.58 + . Parent=g112.t1 >--- 4029 ---- >! chrI AUGUSTUS five_prime_utr 726978 727018 0.44 + . Parent=g112.t1 >*************** >*** 4035 **** >! chrI AUGUSTUS three_prime_utr 727306 727385 0.65 + . Parent=g112.t1 >--- 4035 ---- >! chrI AUGUSTUS three_prime_utr 727306 727385 0.62 + . Parent=g112.t1 >*************** >*** 4049,4050 **** >! chrI AUGUSTUS gene 729958 731454 0.66 + . ID=g113 >! chrI AUGUSTUS transcript 729958 731454 0.66 + . ID=g113.t1;Parent=g113 >--- 4049,4050 ---- >! chrI AUGUSTUS gene 729958 731454 0.64 + . ID=g113 >! chrI AUGUSTUS transcript 729958 731454 0.64 + . ID=g113.t1;Parent=g113 >*************** >*** 4052 **** >! chrI AUGUSTUS five_prime_utr 729958 730010 0.69 + . Parent=g113.t1 >--- 4052 ---- >! chrI AUGUSTUS five_prime_utr 729958 730010 0.67 + . Parent=g113.t1 >*************** >*** 4074,4075 **** >! chrI AUGUSTUS gene 731538 735342 0.31 + . ID=g114 >! chrI AUGUSTUS transcript 731538 735342 0.31 + . ID=g114.t1;Parent=g114 >--- 4074,4075 ---- >! chrI AUGUSTUS gene 731538 735342 0.27 + . ID=g114 >! chrI AUGUSTUS transcript 731538 735342 0.27 + . ID=g114.t1;Parent=g114 >*************** >*** 4077 **** >! chrI AUGUSTUS five_prime_utr 731538 731564 0.53 + . Parent=g114.t1 >--- 4077 ---- >! chrI AUGUSTUS five_prime_utr 731538 731564 0.58 + . Parent=g114.t1 >*************** >*** 4085 **** >! chrI AUGUSTUS three_prime_utr 735315 735342 0.5 + . Parent=g114.t1 >--- 4085 ---- >! chrI AUGUSTUS three_prime_utr 735315 735342 0.48 + . Parent=g114.t1 >*************** >*** 4106 **** >! chrI AUGUSTUS three_prime_utr 735347 735546 0.49 - . Parent=g115.t1 >--- 4106 ---- >! chrI AUGUSTUS three_prime_utr 735347 735546 0.46 - . Parent=g115.t1 >*************** >*** 4110,4111 **** >! chrI AUGUSTUS intron 738265 738491 1 - . Parent=g115.t1 >! chrI AUGUSTUS intron 738644 739590 0.61 - . Parent=g115.t1 >--- 4110,4111 ---- >! chrI AUGUSTUS intron 738265 738491 0.99 - . Parent=g115.t1 >! chrI AUGUSTUS intron 738644 739590 0.72 - . Parent=g115.t1 >*************** >*** 4113,4114 **** >! chrI AUGUSTUS CDS 737442 737735 0.99 - 0 ID=g115.t1.cds;Parent=g115.t1 >! chrI AUGUSTUS CDS 738019 738264 1 - 0 ID=g115.t1.cds;Parent=g115.t1 >--- 4113,4114 ---- >! chrI AUGUSTUS CDS 737442 737735 1 - 0 ID=g115.t1.cds;Parent=g115.t1 >! chrI AUGUSTUS CDS 738019 738264 0.99 - 0 ID=g115.t1.cds;Parent=g115.t1 >*************** >*** 4116 **** >! chrI AUGUSTUS CDS 739591 739612 0.32 - 0 ID=g115.t1.cds;Parent=g115.t1 >--- 4116 ---- >! chrI AUGUSTUS CDS 739591 739612 0.4 - 0 ID=g115.t1.cds;Parent=g115.t1 >*************** >*** 4118 **** >! chrI AUGUSTUS five_prime_utr 739613 739647 0.14 - . Parent=g115.t1 >--- 4118 ---- >! chrI AUGUSTUS five_prime_utr 739613 739647 0.22 - . Parent=g115.t1 >*************** >*** 4139,4140 **** >! chrI AUGUSTUS gene 741279 742867 0.38 - . ID=g116 >! chrI AUGUSTUS transcript 741279 742867 0.38 - . ID=g116.t1;Parent=g116 >--- 4139,4140 ---- >! chrI AUGUSTUS gene 741279 742867 0.41 - . ID=g116 >! chrI AUGUSTUS transcript 741279 742867 0.41 - . ID=g116.t1;Parent=g116 >*************** >*** 4142 **** >! chrI AUGUSTUS three_prime_utr 741279 741396 0.54 - . Parent=g116.t1 >--- 4142 ---- >! chrI AUGUSTUS three_prime_utr 741279 741396 0.66 - . Parent=g116.t1 >*************** >*** 4144,4148 **** >! chrI AUGUSTUS intron 741512 742397 0.99 - . Parent=g116.t1 >! chrI AUGUSTUS intron 742510 742557 0.65 - . Parent=g116.t1 >! chrI AUGUSTUS CDS 741397 741511 0.68 - 1 ID=g116.t1.cds;Parent=g116.t1 >! chrI AUGUSTUS CDS 742398 742509 0.67 - 2 ID=g116.t1.cds;Parent=g116.t1 >! chrI AUGUSTUS CDS 742558 742738 0.65 - 0 ID=g116.t1.cds;Parent=g116.t1 >--- 4144,4148 ---- >! chrI AUGUSTUS intron 741512 742397 1 - . Parent=g116.t1 >! chrI AUGUSTUS intron 742510 742557 0.72 - . Parent=g116.t1 >! chrI AUGUSTUS CDS 741397 741511 0.74 - 1 ID=g116.t1.cds;Parent=g116.t1 >! chrI AUGUSTUS CDS 742398 742509 0.71 - 2 ID=g116.t1.cds;Parent=g116.t1 >! chrI AUGUSTUS CDS 742558 742738 0.71 - 0 ID=g116.t1.cds;Parent=g116.t1 >*************** >*** 4150 **** >! chrI AUGUSTUS five_prime_utr 742739 742867 0.55 - . Parent=g116.t1 >--- 4150 ---- >! chrI AUGUSTUS five_prime_utr 742739 742867 0.49 - . Parent=g116.t1 >*************** >*** 4169 **** >! chrI AUGUSTUS three_prime_utr 755249 755818 0.73 - . Parent=g117.t1 >--- 4169 ---- >! chrI AUGUSTUS three_prime_utr 755249 755818 0.67 - . Parent=g117.t1 >*************** >*** 4174,4175 **** >! chrI AUGUSTUS intron 757498 757545 0.99 - . Parent=g117.t1 >! chrI AUGUSTUS intron 757838 757893 1 - . Parent=g117.t1 >--- 4174,4175 ---- >! chrI AUGUSTUS intron 757498 757545 1 - . Parent=g117.t1 >! chrI AUGUSTUS intron 757838 757893 0.99 - . Parent=g117.t1 >*************** >*** 4177 **** >! chrI AUGUSTUS CDS 756168 756611 1 - 0 ID=g117.t1.cds;Parent=g117.t1 >--- 4177 ---- >! chrI AUGUSTUS CDS 756168 756611 0.99 - 0 ID=g117.t1.cds;Parent=g117.t1 >*************** >*** 4179 **** >! chrI AUGUSTUS CDS 757385 757497 0.99 - 2 ID=g117.t1.cds;Parent=g117.t1 >--- 4179 ---- >! chrI AUGUSTUS CDS 757385 757497 1 - 2 ID=g117.t1.cds;Parent=g117.t1 >*************** >*** 4204,4205 **** >! chrI AUGUSTUS gene 759027 760467 0.33 - . ID=g118 >! chrI AUGUSTUS transcript 759027 760467 0.33 - . ID=g118.t1;Parent=g118 >--- 4204,4205 ---- >! chrI AUGUSTUS gene 759027 760467 0.35 - . ID=g118 >! chrI AUGUSTUS transcript 759027 760467 0.35 - . ID=g118.t1;Parent=g118 >*************** >*** 4207 **** >! chrI AUGUSTUS three_prime_utr 759027 759074 0.86 - . Parent=g118.t1 >--- 4207 ---- >! chrI AUGUSTUS three_prime_utr 759027 759074 0.74 - . Parent=g118.t1 >*************** >*** 4209 **** >! chrI AUGUSTUS intron 759246 759313 1 - . Parent=g118.t1 >--- 4209 ---- >! chrI AUGUSTUS intron 759246 759313 0.99 - . Parent=g118.t1 >*************** >*** 4211 **** >! chrI AUGUSTUS intron 759972 760326 0.85 - . Parent=g118.t1 >--- 4211 ---- >! chrI AUGUSTUS intron 759972 760326 0.88 - . Parent=g118.t1 >*************** >*** 4213 **** >! chrI AUGUSTUS CDS 759314 759683 1 - 1 ID=g118.t1.cds;Parent=g118.t1 >--- 4213 ---- >! chrI AUGUSTUS CDS 759314 759683 0.99 - 1 ID=g118.t1.cds;Parent=g118.t1 >*************** >*** 4217 **** >! chrI AUGUSTUS five_prime_utr 760399 760467 0.38 - . Parent=g118.t1 >--- 4217 ---- >! chrI AUGUSTUS five_prime_utr 760399 760467 0.47 - . Parent=g118.t1 >*************** >*** 4235,4236 **** >! chrI AUGUSTUS gene 761007 776097 0.15 - . ID=g119 >! chrI AUGUSTUS transcript 761007 776097 0.15 - . ID=g119.t1;Parent=g119 >--- 4235,4236 ---- >! chrI AUGUSTUS gene 761007 776097 0.17 - . ID=g119 >! chrI AUGUSTUS transcript 761007 776097 0.17 - . ID=g119.t1;Parent=g119 >*************** >*** 4238 **** >! chrI AUGUSTUS three_prime_utr 761007 761318 0.59 - . Parent=g119.t1 >--- 4238 ---- >! chrI AUGUSTUS three_prime_utr 761007 761318 0.53 - . Parent=g119.t1 >*************** >*** 4240 **** >! chrI AUGUSTUS intron 761515 762147 0.98 - . Parent=g119.t1 >--- 4240 ---- >! chrI AUGUSTUS intron 761515 762147 1 - . Parent=g119.t1 >*************** >*** 4244,4246 **** >! chrI AUGUSTUS intron 765898 767170 0.96 - . Parent=g119.t1 >! chrI AUGUSTUS intron 767831 768648 1 - . Parent=g119.t1 >! chrI AUGUSTUS intron 768873 769761 1 - . Parent=g119.t1 >--- 4244,4246 ---- >! chrI AUGUSTUS intron 765898 767170 0.98 - . Parent=g119.t1 >! chrI AUGUSTUS intron 767831 768648 0.98 - . Parent=g119.t1 >! chrI AUGUSTUS intron 768873 769761 0.98 - . Parent=g119.t1 >*************** >*** 4248 **** >! chrI AUGUSTUS intron 771372 772770 0.99 - . Parent=g119.t1 >--- 4248 ---- >! chrI AUGUSTUS intron 771372 772770 1 - . Parent=g119.t1 >*************** >*** 4252,4254 **** >! chrI AUGUSTUS intron 775896 775945 0.97 - . Parent=g119.t1 >! chrI AUGUSTUS CDS 761319 761514 0.99 - 1 ID=g119.t1.cds;Parent=g119.t1 >! chrI AUGUSTUS CDS 762148 762393 0.98 - 1 ID=g119.t1.cds;Parent=g119.t1 >--- 4252,4254 ---- >! chrI AUGUSTUS intron 775896 775945 1 - . Parent=g119.t1 >! chrI AUGUSTUS CDS 761319 761514 1 - 1 ID=g119.t1.cds;Parent=g119.t1 >! chrI AUGUSTUS CDS 762148 762393 1 - 1 ID=g119.t1.cds;Parent=g119.t1 >*************** >*** 4259,4260 **** >! chrI AUGUSTUS CDS 768649 768872 1 - 1 ID=g119.t1.cds;Parent=g119.t1 >! chrI AUGUSTUS CDS 769762 769873 1 - 2 ID=g119.t1.cds;Parent=g119.t1 >--- 4259,4260 ---- >! chrI AUGUSTUS CDS 768649 768872 0.98 - 1 ID=g119.t1.cds;Parent=g119.t1 >! chrI AUGUSTUS CDS 769762 769873 0.98 - 2 ID=g119.t1.cds;Parent=g119.t1 >*************** >*** 4262 **** >! chrI AUGUSTUS CDS 772771 772985 0.99 - 1 ID=g119.t1.cds;Parent=g119.t1 >--- 4262 ---- >! chrI AUGUSTUS CDS 772771 772985 1 - 1 ID=g119.t1.cds;Parent=g119.t1 >*************** >*** 4266 **** >! chrI AUGUSTUS CDS 775946 776020 0.45 - 0 ID=g119.t1.cds;Parent=g119.t1 >--- 4266 ---- >! chrI AUGUSTUS CDS 775946 776020 0.54 - 0 ID=g119.t1.cds;Parent=g119.t1 >*************** >*** 4268 **** >! chrI AUGUSTUS five_prime_utr 776021 776097 0.23 - . Parent=g119.t1 >--- 4268 ---- >! chrI AUGUSTUS five_prime_utr 776021 776097 0.26 - . Parent=g119.t1 >*************** >*** 4298,4299 **** >! chrI AUGUSTUS gene 776391 778787 0.31 - . ID=g120 >! chrI AUGUSTUS transcript 776391 778787 0.31 - . ID=g120.t1;Parent=g120 >--- 4298,4299 ---- >! chrI AUGUSTUS gene 776391 778787 0.28 - . ID=g120 >! chrI AUGUSTUS transcript 776391 778787 0.28 - . ID=g120.t1;Parent=g120 >*************** >*** 4303 **** >! chrI AUGUSTUS intron 776551 776987 1 - . Parent=g120.t1 >--- 4303 ---- >! chrI AUGUSTUS intron 776551 776987 0.98 - . Parent=g120.t1 >*************** >*** 4307,4309 **** >! chrI AUGUSTUS CDS 776988 777099 1 - 1 ID=g120.t1.cds;Parent=g120.t1 >! chrI AUGUSTUS CDS 777149 777450 0.96 - 0 ID=g120.t1.cds;Parent=g120.t1 >! chrI AUGUSTUS CDS 778518 778718 0.86 - 0 ID=g120.t1.cds;Parent=g120.t1 >--- 4307,4309 ---- >! chrI AUGUSTUS CDS 776988 777099 0.98 - 1 ID=g120.t1.cds;Parent=g120.t1 >! chrI AUGUSTUS CDS 777149 777450 0.98 - 0 ID=g120.t1.cds;Parent=g120.t1 >! chrI AUGUSTUS CDS 778518 778718 0.88 - 0 ID=g120.t1.cds;Parent=g120.t1 >*************** >*** 4311 **** >! chrI AUGUSTUS five_prime_utr 778719 778787 0.55 - . Parent=g120.t1 >--- 4311 ---- >! chrI AUGUSTUS five_prime_utr 778719 778787 0.5 - . Parent=g120.t1 >*************** >*** 4328,4329 **** >! chrI AUGUSTUS gene 780819 784447 0.35 - . ID=g121 >! chrI AUGUSTUS transcript 780819 784447 0.35 - . ID=g121.t1;Parent=g121 >--- 4328,4329 ---- >! chrI AUGUSTUS gene 780819 784447 0.26 - . ID=g121 >! chrI AUGUSTUS transcript 780819 784447 0.26 - . ID=g121.t1;Parent=g121 >*************** >*** 4336 **** >! chrI AUGUSTUS intron 782589 782645 0.99 - . Parent=g121.t1 >--- 4336 ---- >! chrI AUGUSTUS intron 782589 782645 0.96 - . Parent=g121.t1 >*************** >*** 4338,4339 **** >! chrI AUGUSTUS intron 783057 783097 1 - . Parent=g121.t1 >! chrI AUGUSTUS intron 783174 783222 0.99 - . Parent=g121.t1 >--- 4338,4339 ---- >! chrI AUGUSTUS intron 783057 783097 0.99 - . Parent=g121.t1 >! chrI AUGUSTUS intron 783174 783222 1 - . Parent=g121.t1 >*************** >*** 4341 **** >! chrI AUGUSTUS intron 783590 783642 0.89 - . Parent=g121.t1 >--- 4341 ---- >! chrI AUGUSTUS intron 783590 783642 0.91 - . Parent=g121.t1 >*************** >*** 4344 **** >! chrI AUGUSTUS CDS 780851 781718 0.99 - 1 ID=g121.t1.cds;Parent=g121.t1 >--- 4344 ---- >! chrI AUGUSTUS CDS 780851 781718 1 - 1 ID=g121.t1.cds;Parent=g121.t1 >*************** >*** 4348,4353 **** >! chrI AUGUSTUS CDS 782646 782791 0.99 - 1 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 782841 783056 1 - 1 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 783098 783173 1 - 2 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 783223 783361 0.97 - 0 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 783525 783589 0.95 - 2 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 783643 783776 0.91 - 1 ID=g121.t1.cds;Parent=g121.t1 >--- 4348,4353 ---- >! chrI AUGUSTUS CDS 782646 782791 0.96 - 1 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 782841 783056 0.99 - 1 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 783098 783173 0.99 - 2 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 783223 783361 0.98 - 0 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 783525 783589 0.94 - 2 ID=g121.t1.cds;Parent=g121.t1 >! chrI AUGUSTUS CDS 783643 783776 0.93 - 1 ID=g121.t1.cds;Parent=g121.t1 >*************** >*** 4357 **** >! chrI AUGUSTUS five_prime_utr 784273 784447 0.45 - . Parent=g121.t1 >--- 4357 ---- >! chrI AUGUSTUS five_prime_utr 784273 784447 0.36 - . Parent=g121.t1 >*************** >*** 4379,4380 **** >! chrI AUGUSTUS gene 784623 785837 0.62 - . ID=g122 >! chrI AUGUSTUS transcript 784623 785837 0.62 - . ID=g122.t1;Parent=g122 >--- 4379,4380 ---- >! chrI AUGUSTUS gene 784623 785837 0.72 - . ID=g122 >! chrI AUGUSTUS transcript 784623 785837 0.72 - . ID=g122.t1;Parent=g122 >*************** >*** 4382 **** >! chrI AUGUSTUS three_prime_utr 784623 784667 0.69 - . Parent=g122.t1 >--- 4382 ---- >! chrI AUGUSTUS three_prime_utr 784623 784667 0.74 - . Parent=g122.t1 >*************** >*** 4388 **** >! chrI AUGUSTUS CDS 785596 785797 0.99 - 0 ID=g122.t1.cds;Parent=g122.t1 >--- 4388 ---- >! chrI AUGUSTUS CDS 785596 785797 1 - 0 ID=g122.t1.cds;Parent=g122.t1 >*************** >*** 4390 **** >! chrI AUGUSTUS five_prime_utr 785798 785837 0.93 - . Parent=g122.t1 >--- 4390 ---- >! chrI AUGUSTUS five_prime_utr 785798 785837 0.97 - . Parent=g122.t1 >*************** >*** 4407,4408 **** >! chrI AUGUSTUS gene 786358 787567 0.2 + . ID=g123 >! chrI AUGUSTUS transcript 786358 787567 0.2 + . ID=g123.t1;Parent=g123 >--- 4407,4408 ---- >! chrI AUGUSTUS gene 786358 787567 0.18 + . ID=g123 >! chrI AUGUSTUS transcript 786358 787567 0.18 + . ID=g123.t1;Parent=g123 >*************** >*** 4410 **** >! chrI AUGUSTUS five_prime_utr 786358 786387 0.47 + . Parent=g123.t1 >--- 4410 ---- >! chrI AUGUSTUS five_prime_utr 786358 786387 0.31 + . Parent=g123.t1 >*************** >*** 4414,4415 **** >! chrI AUGUSTUS CDS 786388 786502 1 + 0 ID=g123.t1.cds;Parent=g123.t1 >! chrI AUGUSTUS CDS 786708 787369 1 + 2 ID=g123.t1.cds;Parent=g123.t1 >--- 4414,4415 ---- >! chrI AUGUSTUS CDS 786388 786502 0.99 + 0 ID=g123.t1.cds;Parent=g123.t1 >! chrI AUGUSTUS CDS 786708 787369 0.99 + 2 ID=g123.t1.cds;Parent=g123.t1 >*************** >*** 4418 **** >! chrI AUGUSTUS three_prime_utr 787514 787567 0.38 + . Parent=g123.t1 >--- 4418 ---- >! chrI AUGUSTUS three_prime_utr 787514 787567 0.46 + . Parent=g123.t1 >*************** >*** 4435,4436 **** >! chrI AUGUSTUS gene 787955 788447 0.32 - . ID=g124 >! chrI AUGUSTUS transcript 787955 788447 0.32 - . ID=g124.t1;Parent=g124 >--- 4435,4436 ---- >! chrI AUGUSTUS gene 787955 788447 0.33 - . ID=g124 >! chrI AUGUSTUS transcript 787955 788447 0.33 - . ID=g124.t1;Parent=g124 >*************** >*** 4438 **** >! chrI AUGUSTUS three_prime_utr 787955 787981 0.39 - . Parent=g124.t1 >--- 4438 ---- >! chrI AUGUSTUS three_prime_utr 787955 787981 0.37 - . Parent=g124.t1 >*************** >*** 4442 **** >! chrI AUGUSTUS five_prime_utr 788420 788447 0.89 - . Parent=g124.t1 >--- 4442 ---- >! chrI AUGUSTUS five_prime_utr 788420 788447 0.92 - . Parent=g124.t1 >*************** >*** 4457,4458 **** >! chrI AUGUSTUS gene 788750 790347 0.18 - . ID=g125 >! chrI AUGUSTUS transcript 788750 790347 0.18 - . ID=g125.t1;Parent=g125 >--- 4457,4458 ---- >! chrI AUGUSTUS gene 788750 790347 0.23 - . ID=g125 >! chrI AUGUSTUS transcript 788750 790347 0.23 - . ID=g125.t1;Parent=g125 >*************** >*** 4460 **** >! chrI AUGUSTUS three_prime_utr 788750 788770 0.72 - . Parent=g125.t1 >--- 4460 ---- >! chrI AUGUSTUS three_prime_utr 788750 788770 0.76 - . Parent=g125.t1 >*************** >*** 4462,4463 **** >! chrI AUGUSTUS intron 789214 789492 0.94 - . Parent=g125.t1 >! chrI AUGUSTUS intron 789641 789685 0.93 - . Parent=g125.t1 >--- 4462,4463 ---- >! chrI AUGUSTUS intron 789214 789492 0.91 - . Parent=g125.t1 >! chrI AUGUSTUS intron 789641 789685 0.88 - . Parent=g125.t1 >*************** >*** 4466,4469 **** >! chrI AUGUSTUS intron 790131 790176 0.99 - . Parent=g125.t1 >! chrI AUGUSTUS CDS 788771 789213 0.63 - 2 ID=g125.t1.cds;Parent=g125.t1 >! chrI AUGUSTUS CDS 789493 789640 0.93 - 0 ID=g125.t1.cds;Parent=g125.t1 >! chrI AUGUSTUS CDS 789686 789750 0.93 - 2 ID=g125.t1.cds;Parent=g125.t1 >--- 4466,4469 ---- >! chrI AUGUSTUS intron 790131 790176 1 - . Parent=g125.t1 >! chrI AUGUSTUS CDS 788771 789213 0.62 - 2 ID=g125.t1.cds;Parent=g125.t1 >! chrI AUGUSTUS CDS 789493 789640 0.88 - 0 ID=g125.t1.cds;Parent=g125.t1 >! chrI AUGUSTUS CDS 789686 789750 0.88 - 2 ID=g125.t1.cds;Parent=g125.t1 >*************** >*** 4472 **** >! chrI AUGUSTUS CDS 790177 790310 0.95 - 0 ID=g125.t1.cds;Parent=g125.t1 >--- 4472 ---- >! chrI AUGUSTUS CDS 790177 790310 0.94 - 0 ID=g125.t1.cds;Parent=g125.t1 >*************** >*** 4474 **** >! chrI AUGUSTUS five_prime_utr 790311 790347 0.57 - . Parent=g125.t1 >--- 4474 ---- >! chrI AUGUSTUS five_prime_utr 790311 790347 0.55 - . Parent=g125.t1 >*************** >*** 4495 **** >! chrI AUGUSTUS five_prime_utr 791668 791689 0.49 + . Parent=g126.t1 >--- 4495 ---- >! chrI AUGUSTUS five_prime_utr 791668 791689 0.26 + . Parent=g126.t1 >*************** >*** 4497,4499 **** >! chrI AUGUSTUS intron 791791 791982 1 + . Parent=g126.t1 >! chrI AUGUSTUS intron 792090 792132 1 + . Parent=g126.t1 >! chrI AUGUSTUS intron 792239 792341 0.99 + . Parent=g126.t1 >--- 4497,4499 ---- >! chrI AUGUSTUS intron 791791 791982 0.99 + . Parent=g126.t1 >! chrI AUGUSTUS intron 792090 792132 0.98 + . Parent=g126.t1 >! chrI AUGUSTUS intron 792239 792341 1 + . Parent=g126.t1 >*************** >*** 4502,4506 **** >! chrI AUGUSTUS intron 794251 794295 0.69 + . Parent=g126.t1 >! chrI AUGUSTUS intron 794383 794647 0.98 + . Parent=g126.t1 >! chrI AUGUSTUS intron 794893 795269 0.36 + . Parent=g126.t1 >! chrI AUGUSTUS intron 795361 796132 0.93 + . Parent=g126.t1 >! chrI AUGUSTUS intron 796211 796275 0.95 + . Parent=g126.t1 >--- 4502,4506 ---- >! chrI AUGUSTUS intron 794251 794295 0.78 + . Parent=g126.t1 >! chrI AUGUSTUS intron 794383 794647 0.96 + . Parent=g126.t1 >! chrI AUGUSTUS intron 794893 795269 0.41 + . Parent=g126.t1 >! chrI AUGUSTUS intron 795361 796132 0.92 + . Parent=g126.t1 >! chrI AUGUSTUS intron 796211 796275 0.96 + . Parent=g126.t1 >*************** >*** 4510,4513 **** >! chrI AUGUSTUS intron 797064 797122 0.51 + . Parent=g126.t1 >! chrI AUGUSTUS CDS 791690 791790 0.99 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 791983 792089 1 + 1 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 792133 792238 0.99 + 2 ID=g126.t1.cds;Parent=g126.t1 >--- 4510,4513 ---- >! chrI AUGUSTUS intron 797064 797122 0.48 + . Parent=g126.t1 >! chrI AUGUSTUS CDS 791690 791790 0.98 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 791983 792089 0.98 + 1 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 792133 792238 0.98 + 2 ID=g126.t1.cds;Parent=g126.t1 >*************** >*** 4516,4521 **** >! chrI AUGUSTUS CDS 794014 794250 0.68 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 794296 794382 0.72 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 794648 794892 0.36 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 795270 795360 0.36 + 1 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 796133 796210 0.93 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 796276 796397 0.98 + 0 ID=g126.t1.cds;Parent=g126.t1 >--- 4516,4521 ---- >! chrI AUGUSTUS CDS 794014 794250 0.77 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 794296 794382 0.75 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 794648 794892 0.41 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 795270 795360 0.41 + 1 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 796133 796210 0.92 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 796276 796397 0.99 + 0 ID=g126.t1.cds;Parent=g126.t1 >*************** >*** 4524,4525 **** >! chrI AUGUSTUS CDS 796919 797063 0.51 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 797123 797262 0.99 + 2 ID=g126.t1.cds;Parent=g126.t1 >--- 4524,4525 ---- >! chrI AUGUSTUS CDS 796919 797063 0.48 + 0 ID=g126.t1.cds;Parent=g126.t1 >! chrI AUGUSTUS CDS 797123 797262 1 + 2 ID=g126.t1.cds;Parent=g126.t1 >*************** >*** 4527 **** >! chrI AUGUSTUS three_prime_utr 797263 797333 0.88 + . Parent=g126.t1 >--- 4527 ---- >! chrI AUGUSTUS three_prime_utr 797263 797333 0.82 + . Parent=g126.t1 >*************** >*** 4549,4550 **** >! chrI AUGUSTUS gene 798176 799907 0.63 - . ID=g127 >! chrI AUGUSTUS transcript 798176 799907 0.63 - . ID=g127.t1;Parent=g127 >--- 4549,4550 ---- >! chrI AUGUSTUS gene 798176 799907 0.77 - . ID=g127 >! chrI AUGUSTUS transcript 798176 799907 0.77 - . ID=g127.t1;Parent=g127 >*************** >*** 4552 **** >! chrI AUGUSTUS three_prime_utr 798176 798213 0.71 - . Parent=g127.t1 >--- 4552 ---- >! chrI AUGUSTUS three_prime_utr 798176 798213 0.81 - . Parent=g127.t1 >*************** >*** 4562 **** >! chrI AUGUSTUS five_prime_utr 799846 799907 0.9 - . Parent=g127.t1 >--- 4562 ---- >! chrI AUGUSTUS five_prime_utr 799846 799907 0.96 - . Parent=g127.t1 >*************** >*** 4580,4581 **** >! chrI AUGUSTUS gene 802778 815815 0.06 + . ID=g128 >! chrI AUGUSTUS transcript 802778 815815 0.06 + . ID=g128.t1;Parent=g128 >--- 4580,4581 ---- >! chrI AUGUSTUS gene 802778 815815 0.04 + . ID=g128 >! chrI AUGUSTUS transcript 802778 815815 0.04 + . ID=g128.t1;Parent=g128 >*************** >*** 4583 **** >! chrI AUGUSTUS five_prime_utr 802778 802822 0.2 + . Parent=g128.t1 >--- 4583 ---- >! chrI AUGUSTUS five_prime_utr 802778 802822 0.18 + . Parent=g128.t1 >*************** >*** 4585,4586 **** >! chrI AUGUSTUS intron 802962 803997 0.99 + . Parent=g128.t1 >! chrI AUGUSTUS intron 804105 804151 1 + . Parent=g128.t1 >--- 4585,4586 ---- >! chrI AUGUSTUS intron 802962 803997 1 + . Parent=g128.t1 >! chrI AUGUSTUS intron 804105 804151 0.99 + . Parent=g128.t1 >*************** >*** 4588,4590 **** >! chrI AUGUSTUS intron 805232 805324 0.97 + . Parent=g128.t1 >! chrI AUGUSTUS intron 805401 805455 0.97 + . Parent=g128.t1 >! chrI AUGUSTUS intron 805724 805770 0.74 + . Parent=g128.t1 >--- 4588,4590 ---- >! chrI AUGUSTUS intron 805232 805324 0.99 + . Parent=g128.t1 >! chrI AUGUSTUS intron 805401 805455 0.99 + . Parent=g128.t1 >! chrI AUGUSTUS intron 805724 805770 0.81 + . Parent=g128.t1 >*************** >*** 4592 **** >! chrI AUGUSTUS intron 806973 807018 0.8 + . Parent=g128.t1 >--- 4592 ---- >! chrI AUGUSTUS intron 806973 807018 0.82 + . Parent=g128.t1 >*************** >*** 4596 **** >! chrI AUGUSTUS intron 808446 808660 0.87 + . Parent=g128.t1 >--- 4596 ---- >! chrI AUGUSTUS intron 808446 808660 0.85 + . Parent=g128.t1 >*************** >*** 4605 **** >! chrI AUGUSTUS intron 811624 811674 0.98 + . Parent=g128.t1 >--- 4605 ---- >! chrI AUGUSTUS intron 811624 811674 1 + . Parent=g128.t1 >*************** >*** 4608 **** >! chrI AUGUSTUS intron 812940 813000 1 + . Parent=g128.t1 >--- 4608 ---- >! chrI AUGUSTUS intron 812940 813000 0.99 + . Parent=g128.t1 >*************** >*** 4612 **** >! chrI AUGUSTUS intron 813749 814095 0.8 + . Parent=g128.t1 >--- 4612 ---- >! chrI AUGUSTUS intron 813749 814095 0.84 + . Parent=g128.t1 >*************** >*** 4617,4618 **** >! chrI AUGUSTUS CDS 804939 805231 0.97 + 2 ID=g128.t1.cds;Parent=g128.t1 >! chrI AUGUSTUS CDS 805325 805400 0.96 + 0 ID=g128.t1.cds;Parent=g128.t1 >--- 4617,4618 ---- >! chrI AUGUSTUS CDS 804939 805231 0.99 + 2 ID=g128.t1.cds;Parent=g128.t1 >! chrI AUGUSTUS CDS 805325 805400 0.99 + 0 ID=g128.t1.cds;Parent=g128.t1 >*************** >*** 4620,4621 **** >! chrI AUGUSTUS CDS 805771 806032 0.74 + 1 ID=g128.t1.cds;Parent=g128.t1 >! chrI AUGUSTUS CDS 806795 806972 0.8 + 0 ID=g128.t1.cds;Parent=g128.t1 >--- 4620,4621 ---- >! chrI AUGUSTUS CDS 805771 806032 0.81 + 1 ID=g128.t1.cds;Parent=g128.t1 >! chrI AUGUSTUS CDS 806795 806972 0.82 + 0 ID=g128.t1.cds;Parent=g128.t1 >*************** >*** 4631 **** >! chrI AUGUSTUS CDS 810290 810588 1 + 2 ID=g128.t1.cds;Parent=g128.t1 >--- 4631 ---- >! chrI AUGUSTUS CDS 810290 810588 0.99 + 2 ID=g128.t1.cds;Parent=g128.t1 >*************** >*** 4634 **** >! chrI AUGUSTUS CDS 811471 811623 0.98 + 2 ID=g128.t1.cds;Parent=g128.t1 >--- 4634 ---- >! chrI AUGUSTUS CDS 811471 811623 1 + 2 ID=g128.t1.cds;Parent=g128.t1 >*************** >*** 4637 **** >! chrI AUGUSTUS CDS 812786 812939 1 + 0 ID=g128.t1.cds;Parent=g128.t1 >--- 4637 ---- >! chrI AUGUSTUS CDS 812786 812939 0.99 + 0 ID=g128.t1.cds;Parent=g128.t1 >*************** >*** 4642,4643 **** >! chrI AUGUSTUS CDS 814096 814361 0.8 + 0 ID=g128.t1.cds;Parent=g128.t1 >! chrI AUGUSTUS CDS 815467 815644 0.97 + 1 ID=g128.t1.cds;Parent=g128.t1 >--- 4642,4643 ---- >! chrI AUGUSTUS CDS 814096 814361 0.84 + 0 ID=g128.t1.cds;Parent=g128.t1 >! chrI AUGUSTUS CDS 815467 815644 0.98 + 1 ID=g128.t1.cds;Parent=g128.t1 >*************** >*** 4645 **** >! chrI AUGUSTUS three_prime_utr 815645 815815 0.56 + . Parent=g128.t1 >--- 4645 ---- >! chrI AUGUSTUS three_prime_utr 815645 815815 0.54 + . Parent=g128.t1 >*************** >*** 4678,4679 **** >! chrI AUGUSTUS gene 816458 820763 0.04 + . ID=g129 >! chrI AUGUSTUS transcript 816458 820763 0.04 + . ID=g129.t1;Parent=g129 >--- 4678,4679 ---- >! chrI AUGUSTUS gene 816458 820763 0.02 + . ID=g129 >! chrI AUGUSTUS transcript 816458 820763 0.02 + . ID=g129.t1;Parent=g129 >*************** >*** 4681 **** >! chrI AUGUSTUS five_prime_utr 816458 816484 0.33 + . Parent=g129.t1 >--- 4681 ---- >! chrI AUGUSTUS five_prime_utr 816458 816484 0.28 + . Parent=g129.t1 >*************** >*** 4686,4688 **** >! chrI AUGUSTUS intron 817627 819484 0.22 + . Parent=g129.t1 >! chrI AUGUSTUS intron 819697 819764 0.89 + . Parent=g129.t1 >! chrI AUGUSTUS intron 819837 819890 0.87 + . Parent=g129.t1 >--- 4686,4688 ---- >! chrI AUGUSTUS intron 817627 819484 0.17 + . Parent=g129.t1 >! chrI AUGUSTUS intron 819697 819764 0.91 + . Parent=g129.t1 >! chrI AUGUSTUS intron 819837 819890 0.9 + . Parent=g129.t1 >*************** >*** 4693,4696 **** >! chrI AUGUSTUS CDS 817555 817626 0.22 + 0 ID=g129.t1.cds;Parent=g129.t1 >! chrI AUGUSTUS CDS 819485 819696 0.97 + 0 ID=g129.t1.cds;Parent=g129.t1 >! chrI AUGUSTUS CDS 819765 819836 0.89 + 1 ID=g129.t1.cds;Parent=g129.t1 >! chrI AUGUSTUS CDS 819891 820008 0.98 + 1 ID=g129.t1.cds;Parent=g129.t1 >--- 4693,4696 ---- >! chrI AUGUSTUS CDS 817555 817626 0.17 + 0 ID=g129.t1.cds;Parent=g129.t1 >! chrI AUGUSTUS CDS 819485 819696 0.96 + 0 ID=g129.t1.cds;Parent=g129.t1 >! chrI AUGUSTUS CDS 819765 819836 0.91 + 1 ID=g129.t1.cds;Parent=g129.t1 >! chrI AUGUSTUS CDS 819891 820008 0.99 + 1 ID=g129.t1.cds;Parent=g129.t1 >*************** >*** 4699 **** >! chrI AUGUSTUS three_prime_utr 820690 820763 0.31 + . Parent=g129.t1 >--- 4699 ---- >! chrI AUGUSTUS three_prime_utr 820690 820763 0.3 + . Parent=g129.t1 >*************** >*** 4750 **** >! chrI AUGUSTUS three_prime_utr 822236 822933 0.82 - . Parent=g131.t1 >--- 4750 ---- >! chrI AUGUSTUS three_prime_utr 822236 822933 0.86 - . Parent=g131.t1 >*************** >*** 4752,4753 **** >! chrI AUGUSTUS intron 823011 823479 0.95 - . Parent=g131.t1 >! chrI AUGUSTUS intron 823939 824877 0.96 - . Parent=g131.t1 >--- 4752,4753 ---- >! chrI AUGUSTUS intron 823011 823479 0.96 - . Parent=g131.t1 >! chrI AUGUSTUS intron 823939 824877 0.94 - . Parent=g131.t1 >*************** >*** 4755,4760 **** >! chrI AUGUSTUS intron 828600 830119 0.95 - . Parent=g131.t1 >! chrI AUGUSTUS CDS 822934 823010 0.95 - 2 ID=g131.t1.cds;Parent=g131.t1 >! chrI AUGUSTUS CDS 823480 823938 0.99 - 2 ID=g131.t1.cds;Parent=g131.t1 >! chrI AUGUSTUS CDS 824878 825430 0.96 - 0 ID=g131.t1.cds;Parent=g131.t1 >! chrI AUGUSTUS CDS 828481 828599 0.95 - 2 ID=g131.t1.cds;Parent=g131.t1 >! chrI AUGUSTUS CDS 830120 830294 0.76 - 0 ID=g131.t1.cds;Parent=g131.t1 >--- 4755,4760 ---- >! chrI AUGUSTUS intron 828600 830119 0.97 - . Parent=g131.t1 >! chrI AUGUSTUS CDS 822934 823010 0.96 - 2 ID=g131.t1.cds;Parent=g131.t1 >! chrI AUGUSTUS CDS 823480 823938 1 - 2 ID=g131.t1.cds;Parent=g131.t1 >! chrI AUGUSTUS CDS 824878 825430 0.94 - 0 ID=g131.t1.cds;Parent=g131.t1 >! chrI AUGUSTUS CDS 828481 828599 0.98 - 2 ID=g131.t1.cds;Parent=g131.t1 >! chrI AUGUSTUS CDS 830120 830294 0.73 - 0 ID=g131.t1.cds;Parent=g131.t1 >*************** >*** 4762 **** >! chrI AUGUSTUS five_prime_utr 830295 830357 0.3 - . Parent=g131.t1 >--- 4762 ---- >! chrI AUGUSTUS five_prime_utr 830295 830357 0.29 - . Parent=g131.t1 >*************** >*** 4781,4782 **** >! chrI AUGUSTUS gene 846948 849832 0.03 + . ID=g132 >! chrI AUGUSTUS transcript 846948 849832 0.03 + . ID=g132.t1;Parent=g132 >--- 4781,4782 ---- >! chrI AUGUSTUS gene 846948 849832 0.02 + . ID=g132 >! chrI AUGUSTUS transcript 846948 849832 0.02 + . ID=g132.t1;Parent=g132 >*************** >*** 4784 **** >! chrI AUGUSTUS five_prime_utr 846948 846974 0.12 + . Parent=g132.t1 >--- 4784 ---- >! chrI AUGUSTUS five_prime_utr 846948 846974 0.1 + . Parent=g132.t1 >*************** >*** 4788,4790 **** >! chrI AUGUSTUS intron 848588 849255 0.99 + . Parent=g132.t1 >! chrI AUGUSTUS intron 849388 849679 0.97 + . Parent=g132.t1 >! chrI AUGUSTUS CDS 846975 847055 0.31 + 0 ID=g132.t1.cds;Parent=g132.t1 >--- 4788,4790 ---- >! chrI AUGUSTUS intron 848588 849255 1 + . Parent=g132.t1 >! chrI AUGUSTUS intron 849388 849679 0.99 + . Parent=g132.t1 >! chrI AUGUSTUS CDS 846975 847055 0.35 + 0 ID=g132.t1.cds;Parent=g132.t1 >*************** >*** 4792,4794 **** >! chrI AUGUSTUS CDS 848045 848587 0.71 + 0 ID=g132.t1.cds;Parent=g132.t1 >! chrI AUGUSTUS CDS 849256 849387 0.96 + 0 ID=g132.t1.cds;Parent=g132.t1 >! chrI AUGUSTUS CDS 849680 849793 0.98 + 0 ID=g132.t1.cds;Parent=g132.t1 >--- 4792,4794 ---- >! chrI AUGUSTUS CDS 848045 848587 0.75 + 0 ID=g132.t1.cds;Parent=g132.t1 >! chrI AUGUSTUS CDS 849256 849387 0.99 + 0 ID=g132.t1.cds;Parent=g132.t1 >! chrI AUGUSTUS CDS 849680 849793 0.99 + 0 ID=g132.t1.cds;Parent=g132.t1 >*************** >*** 4796 **** >! chrI AUGUSTUS three_prime_utr 849794 849832 0.22 + . Parent=g132.t1 >--- 4796 ---- >! chrI AUGUSTUS three_prime_utr 849794 849832 0.21 + . Parent=g132.t1 >*************** >*** 4818 **** >! chrI AUGUSTUS three_prime_utr 851958 852030 0.86 - . Parent=g133.t1 >--- 4818 ---- >! chrI AUGUSTUS three_prime_utr 851958 852030 0.79 - . Parent=g133.t1 >*************** >*** 4822 **** >! chrI AUGUSTUS intron 853261 853315 0.95 - . Parent=g133.t1 >--- 4822 ---- >! chrI AUGUSTUS intron 853261 853315 0.99 - . Parent=g133.t1 >*************** >*** 4825,4826 **** >! chrI AUGUSTUS CDS 853159 853260 0.95 - 2 ID=g133.t1.cds;Parent=g133.t1 >! chrI AUGUSTUS CDS 853316 853319 0.92 - 0 ID=g133.t1.cds;Parent=g133.t1 >--- 4825,4826 ---- >! chrI AUGUSTUS CDS 853159 853260 0.99 - 2 ID=g133.t1.cds;Parent=g133.t1 >! chrI AUGUSTUS CDS 853316 853319 0.98 - 0 ID=g133.t1.cds;Parent=g133.t1 >*************** >*** 4828 **** >! chrI AUGUSTUS five_prime_utr 853320 853384 0.84 - . Parent=g133.t1 >--- 4828 ---- >! chrI AUGUSTUS five_prime_utr 853320 853384 0.94 - . Parent=g133.t1 >*************** >*** 4843,4844 **** >! chrI AUGUSTUS gene 853926 855754 0.1 - . ID=g134 >! chrI AUGUSTUS transcript 853926 855754 0.1 - . ID=g134.t1;Parent=g134 >--- 4843,4844 ---- >! chrI AUGUSTUS gene 853926 855754 0.18 - . ID=g134 >! chrI AUGUSTUS transcript 853926 855754 0.18 - . ID=g134.t1;Parent=g134 >*************** >*** 4846 **** >! chrI AUGUSTUS three_prime_utr 853926 854051 0.39 - . Parent=g134.t1 >--- 4846 ---- >! chrI AUGUSTUS three_prime_utr 853926 854051 0.43 - . Parent=g134.t1 >*************** >*** 4849,4850 **** >! chrI AUGUSTUS intron 854405 854452 0.73 - . Parent=g134.t1 >! chrI AUGUSTUS intron 855251 855572 0.97 - . Parent=g134.t1 >--- 4849,4850 ---- >! chrI AUGUSTUS intron 854405 854452 0.85 - . Parent=g134.t1 >! chrI AUGUSTUS intron 855251 855572 0.94 - . Parent=g134.t1 >*************** >*** 4852,4854 **** >! chrI AUGUSTUS CDS 854192 854404 0.74 - 0 ID=g134.t1.cds;Parent=g134.t1 >! chrI AUGUSTUS CDS 854453 855250 0.73 - 0 ID=g134.t1.cds;Parent=g134.t1 >! chrI AUGUSTUS CDS 855573 855671 0.97 - 0 ID=g134.t1.cds;Parent=g134.t1 >--- 4852,4854 ---- >! chrI AUGUSTUS CDS 854192 854404 0.85 - 0 ID=g134.t1.cds;Parent=g134.t1 >! chrI AUGUSTUS CDS 854453 855250 0.85 - 0 ID=g134.t1.cds;Parent=g134.t1 >! chrI AUGUSTUS CDS 855573 855671 0.94 - 0 ID=g134.t1.cds;Parent=g134.t1 >*************** >*** 4856 **** >! chrI AUGUSTUS five_prime_utr 855672 855754 0.38 - . Parent=g134.t1 >--- 4856 ---- >! chrI AUGUSTUS five_prime_utr 855672 855754 0.39 - . Parent=g134.t1 >*************** >*** 4874,4875 **** >! chrI AUGUSTUS gene 866305 869399 0.39 + . ID=g135 >! chrI AUGUSTUS transcript 866305 869399 0.39 + . ID=g135.t1;Parent=g135 >--- 4874,4875 ---- >! chrI AUGUSTUS gene 866305 869399 0.35 + . ID=g135 >! chrI AUGUSTUS transcript 866305 869399 0.35 + . ID=g135.t1;Parent=g135 >*************** >*** 4877 **** >! chrI AUGUSTUS five_prime_utr 866305 866540 0.85 + . Parent=g135.t1 >--- 4877 ---- >! chrI AUGUSTUS five_prime_utr 866305 866540 0.83 + . Parent=g135.t1 >*************** >*** 4879,4880 **** >! chrI AUGUSTUS intron 866607 867244 0.53 + . Parent=g135.t1 >! chrI AUGUSTUS intron 867308 867426 0.73 + . Parent=g135.t1 >--- 4879,4880 ---- >! chrI AUGUSTUS intron 866607 867244 0.5 + . Parent=g135.t1 >! chrI AUGUSTUS intron 867308 867426 0.72 + . Parent=g135.t1 >*************** >*** 4882,4883 **** >! chrI AUGUSTUS intron 867932 868968 0.93 + . Parent=g135.t1 >! chrI AUGUSTUS intron 869075 869194 0.92 + . Parent=g135.t1 >--- 4882,4883 ---- >! chrI AUGUSTUS intron 867932 868968 0.91 + . Parent=g135.t1 >! chrI AUGUSTUS intron 869075 869194 0.88 + . Parent=g135.t1 >*************** >*** 4885 **** >! chrI AUGUSTUS CDS 867245 867307 0.73 + 0 ID=g135.t1.cds;Parent=g135.t1 >--- 4885 ---- >! chrI AUGUSTUS CDS 867245 867307 0.72 + 0 ID=g135.t1.cds;Parent=g135.t1 >*************** >*** 4888,4889 **** >! chrI AUGUSTUS CDS 868969 869074 0.92 + 2 ID=g135.t1.cds;Parent=g135.t1 >! chrI AUGUSTUS CDS 869195 869255 0.92 + 1 ID=g135.t1.cds;Parent=g135.t1 >--- 4888,4889 ---- >! chrI AUGUSTUS CDS 868969 869074 0.88 + 2 ID=g135.t1.cds;Parent=g135.t1 >! chrI AUGUSTUS CDS 869195 869255 0.88 + 1 ID=g135.t1.cds;Parent=g135.t1 >*************** >*** 4891 **** >! chrI AUGUSTUS three_prime_utr 869256 869399 0.82 + . Parent=g135.t1 >--- 4891 ---- >! chrI AUGUSTUS three_prime_utr 869256 869399 0.79 + . Parent=g135.t1 >*************** >*** 4908,4909 **** >! chrI AUGUSTUS gene 870496 875324 0.15 - . ID=g136 >! chrI AUGUSTUS transcript 870496 875324 0.15 - . ID=g136.t1;Parent=g136 >--- 4908,4909 ---- >! chrI AUGUSTUS gene 870496 875324 0.2 - . ID=g136 >! chrI AUGUSTUS transcript 870496 875324 0.2 - . ID=g136.t1;Parent=g136 >*************** >*** 4913,4917 **** >! chrI AUGUSTUS intron 870633 871498 0.76 - . Parent=g136.t1 >! chrI AUGUSTUS intron 871717 872666 1 - . Parent=g136.t1 >! chrI AUGUSTUS intron 872755 873115 0.68 - . Parent=g136.t1 >! chrI AUGUSTUS intron 873227 874418 0.74 - . Parent=g136.t1 >! chrI AUGUSTUS intron 874521 874869 0.78 - . Parent=g136.t1 >--- 4913,4917 ---- >! chrI AUGUSTUS intron 870633 871498 0.67 - . Parent=g136.t1 >! chrI AUGUSTUS intron 871717 872666 0.99 - . Parent=g136.t1 >! chrI AUGUSTUS intron 872755 873115 0.75 - . Parent=g136.t1 >! chrI AUGUSTUS intron 873227 874418 0.86 - . Parent=g136.t1 >! chrI AUGUSTUS intron 874521 874869 0.87 - . Parent=g136.t1 >*************** >*** 4919,4924 **** >! chrI AUGUSTUS intron 875154 875203 0.99 - . Parent=g136.t1 >! chrI AUGUSTUS CDS 870609 870632 0.76 - 0 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 871499 871716 1 - 2 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 872667 872754 0.75 - 0 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 873116 873226 0.9 - 0 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 874419 874520 0.78 - 0 ID=g136.t1.cds;Parent=g136.t1 >--- 4919,4924 ---- >! chrI AUGUSTUS intron 875154 875203 1 - . Parent=g136.t1 >! chrI AUGUSTUS CDS 870609 870632 0.67 - 0 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 871499 871716 0.99 - 2 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 872667 872754 0.78 - 0 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 873116 873226 0.95 - 0 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 874419 874520 0.87 - 0 ID=g136.t1.cds;Parent=g136.t1 >*************** >*** 4926,4927 **** >! chrI AUGUSTUS CDS 875083 875153 0.99 - 0 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 875204 875290 0.97 - 0 ID=g136.t1.cds;Parent=g136.t1 >--- 4926,4927 ---- >! chrI AUGUSTUS CDS 875083 875153 1 - 0 ID=g136.t1.cds;Parent=g136.t1 >! chrI AUGUSTUS CDS 875204 875290 0.99 - 0 ID=g136.t1.cds;Parent=g136.t1 >*************** >*** 4929 **** >! chrI AUGUSTUS five_prime_utr 875291 875324 0.91 - . Parent=g136.t1 >--- 4929 ---- >! chrI AUGUSTUS five_prime_utr 875291 875324 0.9 - . Parent=g136.t1 >*************** >*** 4947,4948 **** >! chrI AUGUSTUS gene 875398 876334 0.81 - . ID=g137 >! chrI AUGUSTUS transcript 875398 876334 0.81 - . ID=g137.t1;Parent=g137 >--- 4947,4948 ---- >! chrI AUGUSTUS gene 875398 876334 0.82 - . ID=g137 >! chrI AUGUSTUS transcript 875398 876334 0.82 - . ID=g137.t1;Parent=g137 >*************** >*** 4952 **** >! chrI AUGUSTUS intron 875603 875650 1 - . Parent=g137.t1 >--- 4952 ---- >! chrI AUGUSTUS intron 875603 875650 0.96 - . Parent=g137.t1 >*************** >*** 4954,4955 **** >! chrI AUGUSTUS CDS 875432 875602 1 - 0 ID=g137.t1.cds;Parent=g137.t1 >! chrI AUGUSTUS CDS 875651 875972 1 - 1 ID=g137.t1.cds;Parent=g137.t1 >--- 4954,4955 ---- >! chrI AUGUSTUS CDS 875432 875602 0.96 - 0 ID=g137.t1.cds;Parent=g137.t1 >! chrI AUGUSTUS CDS 875651 875972 0.96 - 1 ID=g137.t1.cds;Parent=g137.t1 >*************** >*** 4958 **** >! chrI AUGUSTUS five_prime_utr 876304 876334 0.81 - . Parent=g137.t1 >--- 4958 ---- >! chrI AUGUSTUS five_prime_utr 876304 876334 0.84 - . Parent=g137.t1 >*************** >*** 4974,4975 **** >! chrI AUGUSTUS gene 876715 878522 0.63 + . ID=g138 >! chrI AUGUSTUS transcript 876715 878522 0.63 + . ID=g138.t1;Parent=g138 >--- 4974,4975 ---- >! chrI AUGUSTUS gene 876715 878522 0.49 + . ID=g138 >! chrI AUGUSTUS transcript 876715 878522 0.49 + . ID=g138.t1;Parent=g138 >*************** >*** 4977 **** >! chrI AUGUSTUS five_prime_utr 876715 876936 0.92 + . Parent=g138.t1 >--- 4977 ---- >! chrI AUGUSTUS five_prime_utr 876715 876936 0.96 + . Parent=g138.t1 >*************** >*** 4987 **** >! chrI AUGUSTUS three_prime_utr 878039 878522 0.67 + . Parent=g138.t1 >--- 4987 ---- >! chrI AUGUSTUS three_prime_utr 878039 878522 0.52 + . Parent=g138.t1 >*************** >*** 5006,5007 **** >! chrI AUGUSTUS gene 878675 880934 0.68 + . ID=g139 >! chrI AUGUSTUS transcript 878675 880934 0.68 + . ID=g139.t1;Parent=g139 >--- 5006,5007 ---- >! chrI AUGUSTUS gene 878675 880934 0.51 + . ID=g139 >! chrI AUGUSTUS transcript 878675 880934 0.51 + . ID=g139.t1;Parent=g139 >*************** >*** 5009 **** >! chrI AUGUSTUS five_prime_utr 878675 878834 0.89 + . Parent=g139.t1 >--- 5009 ---- >! chrI AUGUSTUS five_prime_utr 878675 878834 0.83 + . Parent=g139.t1 >*************** >*** 5013,5015 **** >! chrI AUGUSTUS intron 879555 880145 0.98 + . Parent=g139.t1 >! chrI AUGUSTUS intron 880392 880769 0.96 + . Parent=g139.t1 >! chrI AUGUSTUS CDS 878835 878950 1 + 0 ID=g139.t1.cds;Parent=g139.t1 >--- 5013,5015 ---- >! chrI AUGUSTUS intron 879555 880145 0.97 + . Parent=g139.t1 >! chrI AUGUSTUS intron 880392 880769 0.91 + . Parent=g139.t1 >! chrI AUGUSTUS CDS 878835 878950 0.99 + 0 ID=g139.t1.cds;Parent=g139.t1 >*************** >*** 5017,5019 **** >! chrI AUGUSTUS CDS 879452 879554 0.98 + 1 ID=g139.t1.cds;Parent=g139.t1 >! chrI AUGUSTUS CDS 880146 880391 0.96 + 0 ID=g139.t1.cds;Parent=g139.t1 >! chrI AUGUSTUS CDS 880770 880856 0.96 + 0 ID=g139.t1.cds;Parent=g139.t1 >--- 5017,5019 ---- >! chrI AUGUSTUS CDS 879452 879554 0.97 + 1 ID=g139.t1.cds;Parent=g139.t1 >! chrI AUGUSTUS CDS 880146 880391 0.91 + 0 ID=g139.t1.cds;Parent=g139.t1 >! chrI AUGUSTUS CDS 880770 880856 0.91 + 0 ID=g139.t1.cds;Parent=g139.t1 >*************** >*** 5021 **** >! chrI AUGUSTUS three_prime_utr 880857 880934 0.77 + . Parent=g139.t1 >--- 5021 ---- >! chrI AUGUSTUS three_prime_utr 880857 880934 0.62 + . Parent=g139.t1 >*************** >*** 5039,5040 **** >! chrI AUGUSTUS gene 881932 883544 0.25 - . ID=g140 >! chrI AUGUSTUS transcript 881932 883544 0.25 - . ID=g140.t1;Parent=g140 >--- 5039,5040 ---- >! chrI AUGUSTUS gene 881932 883544 0.21 - . ID=g140 >! chrI AUGUSTUS transcript 881932 883544 0.21 - . ID=g140.t1;Parent=g140 >*************** >*** 5042 **** >! chrI AUGUSTUS three_prime_utr 881932 881996 0.42 - . Parent=g140.t1 >--- 5042 ---- >! chrI AUGUSTUS three_prime_utr 881932 881996 0.41 - . Parent=g140.t1 >*************** >*** 5044,5046 **** >! chrI AUGUSTUS intron 882363 883324 0.99 - . Parent=g140.t1 >! chrI AUGUSTUS CDS 881997 882362 0.78 - 0 ID=g140.t1.cds;Parent=g140.t1 >! chrI AUGUSTUS CDS 883325 883441 0.99 - 0 ID=g140.t1.cds;Parent=g140.t1 >--- 5044,5046 ---- >! chrI AUGUSTUS intron 882363 883324 1 - . Parent=g140.t1 >! chrI AUGUSTUS CDS 881997 882362 0.66 - 0 ID=g140.t1.cds;Parent=g140.t1 >! chrI AUGUSTUS CDS 883325 883441 1 - 0 ID=g140.t1.cds;Parent=g140.t1 >*************** >*** 5048 **** >! chrI AUGUSTUS five_prime_utr 883442 883544 0.53 - . Parent=g140.t1 >--- 5048 ---- >! chrI AUGUSTUS five_prime_utr 883442 883544 0.57 - . Parent=g140.t1 >*************** >*** 5064,5065 **** >! chrI AUGUSTUS gene 883635 887274 0.26 - . ID=g141 >! chrI AUGUSTUS transcript 883635 887274 0.26 - . ID=g141.t1;Parent=g141 >--- 5064,5065 ---- >! chrI AUGUSTUS gene 883635 887274 0.22 - . ID=g141 >! chrI AUGUSTUS transcript 883635 887274 0.22 - . ID=g141.t1;Parent=g141 >*************** >*** 5067 **** >! chrI AUGUSTUS three_prime_utr 883635 883864 0.3 - . Parent=g141.t1 >--- 5067 ---- >! chrI AUGUSTUS three_prime_utr 883635 883864 0.26 - . Parent=g141.t1 >*************** >*** 5069,5070 **** >! chrI AUGUSTUS intron 883961 885745 1 - . Parent=g141.t1 >! chrI AUGUSTUS intron 886409 887234 0.96 - . Parent=g141.t1 >--- 5069,5070 ---- >! chrI AUGUSTUS intron 883961 885745 0.97 - . Parent=g141.t1 >! chrI AUGUSTUS intron 886409 887234 0.97 - . Parent=g141.t1 >*************** >*** 5072,5073 **** >! chrI AUGUSTUS CDS 885746 886408 0.96 - 0 ID=g141.t1.cds;Parent=g141.t1 >! chrI AUGUSTUS CDS 887235 887246 0.96 - 0 ID=g141.t1.cds;Parent=g141.t1 >--- 5072,5073 ---- >! chrI AUGUSTUS CDS 885746 886408 0.94 - 0 ID=g141.t1.cds;Parent=g141.t1 >! chrI AUGUSTUS CDS 887235 887246 0.97 - 0 ID=g141.t1.cds;Parent=g141.t1 >*************** >*** 5075 **** >! chrI AUGUSTUS five_prime_utr 887247 887274 0.9 - . Parent=g141.t1 >--- 5075 ---- >! chrI AUGUSTUS five_prime_utr 887247 887274 0.92 - . Parent=g141.t1 >*************** >*** 5093,5094 **** >! chrI AUGUSTUS gene 887385 887700 0.95 + . ID=g142 >! chrI AUGUSTUS transcript 887385 887700 0.95 + . ID=g142.t1;Parent=g142 >--- 5093,5094 ---- >! chrI AUGUSTUS gene 887385 887700 0.92 + . ID=g142 >! chrI AUGUSTUS transcript 887385 887700 0.92 + . ID=g142.t1;Parent=g142 >*************** >*** 5096 **** >! chrI AUGUSTUS five_prime_utr 887385 887419 0.96 + . Parent=g142.t1 >--- 5096 ---- >! chrI AUGUSTUS five_prime_utr 887385 887419 0.93 + . Parent=g142.t1 >*************** >*** 5118 **** >! chrI AUGUSTUS five_prime_utr 887755 887800 0.97 + . Parent=g143.t1 >--- 5118 ---- >! chrI AUGUSTUS five_prime_utr 887755 887800 1 + . Parent=g143.t1 >*************** >*** 5120 **** >! chrI AUGUSTUS CDS 887801 888355 0.94 + 0 ID=g143.t1.cds;Parent=g143.t1 >--- 5120 ---- >! chrI AUGUSTUS CDS 887801 888355 0.95 + 0 ID=g143.t1.cds;Parent=g143.t1 >*************** >*** 5122 **** >! chrI AUGUSTUS three_prime_utr 888356 888431 0.49 + . Parent=g143.t1 >--- 5122 ---- >! chrI AUGUSTUS three_prime_utr 888356 888431 0.46 + . Parent=g143.t1 >*************** >*** 5139,5140 **** >! chrI AUGUSTUS gene 888875 889397 0.04 + . ID=g144 >! chrI AUGUSTUS transcript 888875 889397 0.04 + . ID=g144.t1;Parent=g144 >--- 5139,5140 ---- >! chrI AUGUSTUS gene 888875 889397 0.03 + . ID=g144 >! chrI AUGUSTUS transcript 888875 889397 0.03 + . ID=g144.t1;Parent=g144 >*************** >*** 5142 **** >! chrI AUGUSTUS five_prime_utr 888875 888900 0.2 + . Parent=g144.t1 >--- 5142 ---- >! chrI AUGUSTUS five_prime_utr 888875 888900 0.13 + . Parent=g144.t1 >*************** >*** 5144 **** >! chrI AUGUSTUS CDS 888901 889356 0.25 + 0 ID=g144.t1.cds;Parent=g144.t1 >--- 5144 ---- >! chrI AUGUSTUS CDS 888901 889356 0.3 + 0 ID=g144.t1.cds;Parent=g144.t1 >*************** >*** 5146 **** >! chrI AUGUSTUS three_prime_utr 889357 889397 0.22 + . Parent=g144.t1 >--- 5146 ---- >! chrI AUGUSTUS three_prime_utr 889357 889397 0.26 + . Parent=g144.t1 >*************** >*** 5162,5163 **** >! chrI AUGUSTUS gene 890675 891285 0.28 + . ID=g145 >! chrI AUGUSTUS transcript 890675 891285 0.28 + . ID=g145.t1;Parent=g145 >--- 5162,5163 ---- >! chrI AUGUSTUS gene 890675 891285 0.31 + . ID=g145 >! chrI AUGUSTUS transcript 890675 891285 0.31 + . ID=g145.t1;Parent=g145 >*************** >*** 5165 **** >! chrI AUGUSTUS five_prime_utr 890675 890830 0.67 + . Parent=g145.t1 >--- 5165 ---- >! chrI AUGUSTUS five_prime_utr 890675 890830 0.74 + . Parent=g145.t1 >*************** >*** 5167 **** >! chrI AUGUSTUS CDS 890831 891262 0.55 + 0 ID=g145.t1.cds;Parent=g145.t1 >--- 5167 ---- >! chrI AUGUSTUS CDS 890831 891262 0.47 + 0 ID=g145.t1.cds;Parent=g145.t1 >*************** >*** 5169 **** >! chrI AUGUSTUS three_prime_utr 891263 891285 0.46 + . Parent=g145.t1 >--- 5169 ---- >! chrI AUGUSTUS three_prime_utr 891263 891285 0.39 + . Parent=g145.t1 >*************** >*** 5185,5186 **** >! chrI AUGUSTUS gene 892114 893744 0.35 - . ID=g146 >! chrI AUGUSTUS transcript 892114 893744 0.35 - . ID=g146.t1;Parent=g146 >--- 5185,5186 ---- >! chrI AUGUSTUS gene 892114 893744 0.29 - . ID=g146 >! chrI AUGUSTUS transcript 892114 893744 0.29 - . ID=g146.t1;Parent=g146 >*************** >*** 5188 **** >! chrI AUGUSTUS three_prime_utr 892114 892143 0.73 - . Parent=g146.t1 >--- 5188 ---- >! chrI AUGUSTUS three_prime_utr 892114 892143 0.74 - . Parent=g146.t1 >*************** >*** 5190 **** >! chrI AUGUSTUS intron 892156 892633 0.95 - . Parent=g146.t1 >--- 5190 ---- >! chrI AUGUSTUS intron 892156 892633 0.92 - . Parent=g146.t1 >*************** >*** 5192,5195 **** >! chrI AUGUSTUS intron 893558 893611 0.95 - . Parent=g146.t1 >! chrI AUGUSTUS CDS 892144 892155 0.95 - 0 ID=g146.t1.cds;Parent=g146.t1 >! chrI AUGUSTUS CDS 892634 892744 1 - 0 ID=g146.t1.cds;Parent=g146.t1 >! chrI AUGUSTUS CDS 893415 893557 0.95 - 2 ID=g146.t1.cds;Parent=g146.t1 >--- 5192,5195 ---- >! chrI AUGUSTUS intron 893558 893611 0.94 - . Parent=g146.t1 >! chrI AUGUSTUS CDS 892144 892155 0.92 - 0 ID=g146.t1.cds;Parent=g146.t1 >! chrI AUGUSTUS CDS 892634 892744 0.99 - 0 ID=g146.t1.cds;Parent=g146.t1 >! chrI AUGUSTUS CDS 893415 893557 0.94 - 2 ID=g146.t1.cds;Parent=g146.t1 >*************** >*** 5198 **** >! chrI AUGUSTUS five_prime_utr 893715 893744 0.46 - . Parent=g146.t1 >--- 5198 ---- >! chrI AUGUSTUS five_prime_utr 893715 893744 0.44 - . Parent=g146.t1 >*************** >*** 5214,5215 **** >! chrI AUGUSTUS gene 895329 900854 0.4 - . ID=g147 >! chrI AUGUSTUS transcript 895329 900854 0.4 - . ID=g147.t1;Parent=g147 >--- 5214,5215 ---- >! chrI AUGUSTUS gene 895329 900854 0.44 - . ID=g147 >! chrI AUGUSTUS transcript 895329 900854 0.44 - . ID=g147.t1;Parent=g147 >*************** >*** 5217 **** >! chrI AUGUSTUS three_prime_utr 895329 895562 0.98 - . Parent=g147.t1 >--- 5217 ---- >! chrI AUGUSTUS three_prime_utr 895329 895562 0.95 - . Parent=g147.t1 >*************** >*** 5231 **** >! chrI AUGUSTUS five_prime_utr 900803 900854 0.41 - . Parent=g147.t1 >--- 5231 ---- >! chrI AUGUSTUS five_prime_utr 900803 900854 0.47 - . Parent=g147.t1 >*************** >*** 5258,5259 **** >! chrI AUGUSTUS gene 901315 903007 0.23 + . ID=g148 >! chrI AUGUSTUS transcript 901315 903007 0.23 + . ID=g148.t1;Parent=g148 >--- 5258,5259 ---- >! chrI AUGUSTUS gene 901315 903007 0.26 + . ID=g148 >! chrI AUGUSTUS transcript 901315 903007 0.26 + . ID=g148.t1;Parent=g148 >*************** >*** 5261 **** >! chrI AUGUSTUS five_prime_utr 901315 901341 0.49 + . Parent=g148.t1 >--- 5261 ---- >! chrI AUGUSTUS five_prime_utr 901315 901341 0.59 + . Parent=g148.t1 >*************** >*** 5263,5264 **** >! chrI AUGUSTUS intron 901403 901443 0.92 + . Parent=g148.t1 >! chrI AUGUSTUS intron 901509 902155 0.92 + . Parent=g148.t1 >--- 5263,5264 ---- >! chrI AUGUSTUS intron 901403 901443 0.96 + . Parent=g148.t1 >! chrI AUGUSTUS intron 901509 902155 0.96 + . Parent=g148.t1 >*************** >*** 5266 **** >! chrI AUGUSTUS intron 902463 902664 0.86 + . Parent=g148.t1 >--- 5266 ---- >! chrI AUGUSTUS intron 902463 902664 0.82 + . Parent=g148.t1 >*************** >*** 5268,5269 **** >! chrI AUGUSTUS CDS 901342 901402 0.93 + 0 ID=g148.t1.cds;Parent=g148.t1 >! chrI AUGUSTUS CDS 901444 901508 0.92 + 2 ID=g148.t1.cds;Parent=g148.t1 >--- 5268,5269 ---- >! chrI AUGUSTUS CDS 901342 901402 0.97 + 0 ID=g148.t1.cds;Parent=g148.t1 >! chrI AUGUSTUS CDS 901444 901508 0.96 + 2 ID=g148.t1.cds;Parent=g148.t1 >*************** >*** 5271 **** >! chrI AUGUSTUS CDS 902382 902462 0.86 + 0 ID=g148.t1.cds;Parent=g148.t1 >--- 5271 ---- >! chrI AUGUSTUS CDS 902382 902462 0.82 + 0 ID=g148.t1.cds;Parent=g148.t1 >*************** >*** 5275 **** >! chrI AUGUSTUS three_prime_utr 902976 903007 0.5 + . Parent=g148.t1 >--- 5275 ---- >! chrI AUGUSTUS three_prime_utr 902976 903007 0.54 + . Parent=g148.t1 >*************** >*** 5293,5294 **** >! chrI AUGUSTUS gene 903585 907748 0.29 + . ID=g149 >! chrI AUGUSTUS transcript 903585 907748 0.29 + . ID=g149.t1;Parent=g149 >--- 5293,5294 ---- >! chrI AUGUSTUS gene 903585 907748 0.19 + . ID=g149 >! chrI AUGUSTUS transcript 903585 907748 0.19 + . ID=g149.t1;Parent=g149 >*************** >*** 5296 **** >! chrI AUGUSTUS five_prime_utr 903585 903635 0.73 + . Parent=g149.t1 >--- 5296 ---- >! chrI AUGUSTUS five_prime_utr 903585 903635 0.64 + . Parent=g149.t1 >*************** >*** 5298 **** >! chrI AUGUSTUS intron 903652 903780 1 + . Parent=g149.t1 >--- 5298 ---- >! chrI AUGUSTUS intron 903652 903780 0.98 + . Parent=g149.t1 >*************** >*** 5302,5303 **** >! chrI AUGUSTUS intron 905330 905406 0.99 + . Parent=g149.t1 >! chrI AUGUSTUS intron 905700 906018 0.88 + . Parent=g149.t1 >--- 5302,5303 ---- >! chrI AUGUSTUS intron 905330 905406 1 + . Parent=g149.t1 >! chrI AUGUSTUS intron 905700 906018 0.91 + . Parent=g149.t1 >*************** >*** 5305,5307 **** >! chrI AUGUSTUS intron 906306 906368 0.83 + . Parent=g149.t1 >! chrI AUGUSTUS intron 906523 907278 0.99 + . Parent=g149.t1 >! chrI AUGUSTUS CDS 903636 903651 1 + 0 ID=g149.t1.cds;Parent=g149.t1 >--- 5305,5307 ---- >! chrI AUGUSTUS intron 906306 906368 0.81 + . Parent=g149.t1 >! chrI AUGUSTUS intron 906523 907278 1 + . Parent=g149.t1 >! chrI AUGUSTUS CDS 903636 903651 0.98 + 0 ID=g149.t1.cds;Parent=g149.t1 >*************** >*** 5312,5313 **** >! chrI AUGUSTUS CDS 905407 905699 0.91 + 0 ID=g149.t1.cds;Parent=g149.t1 >! chrI AUGUSTUS CDS 906019 906079 0.96 + 1 ID=g149.t1.cds;Parent=g149.t1 >--- 5312,5313 ---- >! chrI AUGUSTUS CDS 905407 905699 0.96 + 0 ID=g149.t1.cds;Parent=g149.t1 >! chrI AUGUSTUS CDS 906019 906079 0.95 + 1 ID=g149.t1.cds;Parent=g149.t1 >*************** >*** 5315 **** >! chrI AUGUSTUS CDS 906369 906522 0.82 + 1 ID=g149.t1.cds;Parent=g149.t1 >--- 5315 ---- >! chrI AUGUSTUS CDS 906369 906522 0.81 + 1 ID=g149.t1.cds;Parent=g149.t1 >*************** >*** 5318 **** >! chrI AUGUSTUS three_prime_utr 907711 907748 0.51 + . Parent=g149.t1 >--- 5318 ---- >! chrI AUGUSTUS three_prime_utr 907711 907748 0.53 + . Parent=g149.t1 >*************** >*** 5338,5339 **** >! chrI AUGUSTUS gene 907752 914354 0.08 - . ID=g150 >! chrI AUGUSTUS transcript 907752 914354 0.08 - . ID=g150.t1;Parent=g150 >--- 5338,5339 ---- >! chrI AUGUSTUS gene 907752 914354 0.06 - . ID=g150 >! chrI AUGUSTUS transcript 907752 914354 0.06 - . ID=g150.t1;Parent=g150 >*************** >*** 5346 **** >! chrI AUGUSTUS intron 912225 913775 0.96 - . Parent=g150.t1 >--- 5346 ---- >! chrI AUGUSTUS intron 912225 913775 0.92 - . Parent=g150.t1 >*************** >*** 5351 **** >! chrI AUGUSTUS CDS 913776 914012 0.32 - 0 ID=g150.t1.cds;Parent=g150.t1 >--- 5351 ---- >! chrI AUGUSTUS CDS 913776 914012 0.35 - 0 ID=g150.t1.cds;Parent=g150.t1 >*************** >*** 5353 **** >! chrI AUGUSTUS five_prime_utr 914013 914354 0.24 - . Parent=g150.t1 >--- 5353 ---- >! chrI AUGUSTUS five_prime_utr 914013 914354 0.19 - . Parent=g150.t1 >*************** >*** 5371,5372 **** >! chrI AUGUSTUS gene 915175 918861 0.38 + . ID=g151 >! chrI AUGUSTUS transcript 915175 918861 0.38 + . ID=g151.t1;Parent=g151 >--- 5371,5372 ---- >! chrI AUGUSTUS gene 915175 918861 0.42 + . ID=g151 >! chrI AUGUSTUS transcript 915175 918861 0.42 + . ID=g151.t1;Parent=g151 >*************** >*** 5374 **** >! chrI AUGUSTUS five_prime_utr 915175 915236 0.82 + . Parent=g151.t1 >--- 5374 ---- >! chrI AUGUSTUS five_prime_utr 915175 915236 0.9 + . Parent=g151.t1 >*************** >*** 5376,5377 **** >! chrI AUGUSTUS intron 915293 915600 0.98 + . Parent=g151.t1 >! chrI AUGUSTUS intron 915937 915983 0.98 + . Parent=g151.t1 >--- 5376,5377 ---- >! chrI AUGUSTUS intron 915293 915600 1 + . Parent=g151.t1 >! chrI AUGUSTUS intron 915937 915983 1 + . Parent=g151.t1 >*************** >*** 5383,5384 **** >! chrI AUGUSTUS CDS 915237 915292 0.96 + 0 ID=g151.t1.cds;Parent=g151.t1 >! chrI AUGUSTUS CDS 915601 915936 0.98 + 1 ID=g151.t1.cds;Parent=g151.t1 >--- 5383,5384 ---- >! chrI AUGUSTUS CDS 915237 915292 0.99 + 0 ID=g151.t1.cds;Parent=g151.t1 >! chrI AUGUSTUS CDS 915601 915936 1 + 1 ID=g151.t1.cds;Parent=g151.t1 >*************** >*** 5386 **** >! chrI AUGUSTUS CDS 916850 917006 0.89 + 1 ID=g151.t1.cds;Parent=g151.t1 >--- 5386 ---- >! chrI AUGUSTUS CDS 916850 917006 0.9 + 1 ID=g151.t1.cds;Parent=g151.t1 >*************** >*** 5392 **** >! chrI AUGUSTUS three_prime_utr 918808 918861 0.51 + . Parent=g151.t1 >--- 5392 ---- >! chrI AUGUSTUS three_prime_utr 918808 918861 0.52 + . Parent=g151.t1 >*************** >*** 5412,5413 **** >! chrI AUGUSTUS gene 918940 924764 0.09 - . ID=g152 >! chrI AUGUSTUS transcript 918940 924764 0.09 - . ID=g152.t1;Parent=g152 >--- 5412,5413 ---- >! chrI AUGUSTUS gene 918940 924764 0.06 - . ID=g152 >! chrI AUGUSTUS transcript 918940 924764 0.06 - . ID=g152.t1;Parent=g152 >*************** >*** 5415 **** >! chrI AUGUSTUS three_prime_utr 918940 918964 0.21 - . Parent=g152.t1 >--- 5415 ---- >! chrI AUGUSTUS three_prime_utr 918940 918964 0.26 - . Parent=g152.t1 >*************** >*** 5418 **** >! chrI AUGUSTUS intron 919721 921373 0.47 - . Parent=g152.t1 >--- 5418 ---- >! chrI AUGUSTUS intron 919721 921373 0.5 - . Parent=g152.t1 >*************** >*** 5420 **** >! chrI AUGUSTUS intron 923169 923817 0.99 - . Parent=g152.t1 >--- 5420 ---- >! chrI AUGUSTUS intron 923169 923817 0.95 - . Parent=g152.t1 >*************** >*** 5423,5424 **** >! chrI AUGUSTUS CDS 919516 919720 0.35 - 1 ID=g152.t1.cds;Parent=g152.t1 >! chrI AUGUSTUS CDS 921374 921951 0.57 - 0 ID=g152.t1.cds;Parent=g152.t1 >--- 5423,5424 ---- >! chrI AUGUSTUS CDS 919516 919720 0.39 - 1 ID=g152.t1.cds;Parent=g152.t1 >! chrI AUGUSTUS CDS 921374 921951 0.71 - 0 ID=g152.t1.cds;Parent=g152.t1 >*************** >*** 5426 **** >! chrI AUGUSTUS CDS 923818 924537 0.99 - 0 ID=g152.t1.cds;Parent=g152.t1 >--- 5426 ---- >! chrI AUGUSTUS CDS 923818 924537 0.95 - 0 ID=g152.t1.cds;Parent=g152.t1 >*************** >*** 5429 **** >! chrI AUGUSTUS five_prime_utr 924696 924764 0.26 - . Parent=g152.t1 >--- 5429 ---- >! chrI AUGUSTUS five_prime_utr 924696 924764 0.19 - . Parent=g152.t1 >*************** >*** 5451,5452 **** >! chrI AUGUSTUS gene 925125 929719 0.1 + . ID=g153 >! chrI AUGUSTUS transcript 925125 929719 0.1 + . ID=g153.t1;Parent=g153 >--- 5451,5452 ---- >! chrI AUGUSTUS gene 925125 929719 0.11 + . ID=g153 >! chrI AUGUSTUS transcript 925125 929719 0.11 + . ID=g153.t1;Parent=g153 >*************** >*** 5454 **** >! chrI AUGUSTUS five_prime_utr 925125 925245 0.84 + . Parent=g153.t1 >--- 5454 ---- >! chrI AUGUSTUS five_prime_utr 925125 925245 0.83 + . Parent=g153.t1 >*************** >*** 5457,5460 **** >! chrI AUGUSTUS intron 925664 925714 0.53 + . Parent=g153.t1 >! chrI AUGUSTUS intron 925946 926559 0.55 + . Parent=g153.t1 >! chrI AUGUSTUS intron 926779 926825 0.99 + . Parent=g153.t1 >! chrI AUGUSTUS intron 926914 926956 1 + . Parent=g153.t1 >--- 5457,5460 ---- >! chrI AUGUSTUS intron 925664 925714 0.64 + . Parent=g153.t1 >! chrI AUGUSTUS intron 925946 926559 0.66 + . Parent=g153.t1 >! chrI AUGUSTUS intron 926779 926825 0.98 + . Parent=g153.t1 >! chrI AUGUSTUS intron 926914 926956 0.99 + . Parent=g153.t1 >*************** >*** 5462,5463 **** >! chrI AUGUSTUS intron 927942 928395 0.92 + . Parent=g153.t1 >! chrI AUGUSTUS intron 928453 928509 0.99 + . Parent=g153.t1 >--- 5462,5463 ---- >! chrI AUGUSTUS intron 927942 928395 0.91 + . Parent=g153.t1 >! chrI AUGUSTUS intron 928453 928509 1 + . Parent=g153.t1 >*************** >*** 5468 **** >! chrI AUGUSTUS CDS 925715 925945 0.52 + 0 ID=g153.t1.cds;Parent=g153.t1 >--- 5468 ---- >! chrI AUGUSTUS CDS 925715 925945 0.64 + 0 ID=g153.t1.cds;Parent=g153.t1 >*************** >*** 5470,5472 **** >! chrI AUGUSTUS CDS 926826 926913 1 + 0 ID=g153.t1.cds;Parent=g153.t1 >! chrI AUGUSTUS CDS 926957 927026 1 + 2 ID=g153.t1.cds;Parent=g153.t1 >! chrI AUGUSTUS CDS 927682 927941 0.93 + 1 ID=g153.t1.cds;Parent=g153.t1 >--- 5470,5472 ---- >! chrI AUGUSTUS CDS 926826 926913 0.99 + 0 ID=g153.t1.cds;Parent=g153.t1 >! chrI AUGUSTUS CDS 926957 927026 0.99 + 2 ID=g153.t1.cds;Parent=g153.t1 >! chrI AUGUSTUS CDS 927682 927941 0.91 + 1 ID=g153.t1.cds;Parent=g153.t1 >*************** >*** 5478 **** >! chrI AUGUSTUS three_prime_utr 929353 929719 0.31 + . Parent=g153.t1 >--- 5478 ---- >! chrI AUGUSTUS three_prime_utr 929353 929719 0.29 + . Parent=g153.t1 >*************** >*** 5500,5501 **** >! chrI AUGUSTUS gene 929805 931362 0.26 + . ID=g154 >! chrI AUGUSTUS transcript 929805 931362 0.26 + . ID=g154.t1;Parent=g154 >--- 5500,5501 ---- >! chrI AUGUSTUS gene 929805 931362 0.27 + . ID=g154 >! chrI AUGUSTUS transcript 929805 931362 0.27 + . ID=g154.t1;Parent=g154 >*************** >*** 5503 **** >! chrI AUGUSTUS five_prime_utr 929805 929840 0.53 + . Parent=g154.t1 >--- 5503 ---- >! chrI AUGUSTUS five_prime_utr 929805 929840 0.49 + . Parent=g154.t1 >*************** >*** 5506,5509 **** >! chrI AUGUSTUS intron 930090 930174 0.84 + . Parent=g154.t1 >! chrI AUGUSTUS intron 930368 931223 0.84 + . Parent=g154.t1 >! chrI AUGUSTUS CDS 929841 929885 0.88 + 0 ID=g154.t1.cds;Parent=g154.t1 >! chrI AUGUSTUS CDS 929947 930089 0.84 + 0 ID=g154.t1.cds;Parent=g154.t1 >--- 5506,5509 ---- >! chrI AUGUSTUS intron 930090 930174 0.83 + . Parent=g154.t1 >! chrI AUGUSTUS intron 930368 931223 0.85 + . Parent=g154.t1 >! chrI AUGUSTUS CDS 929841 929885 0.78 + 0 ID=g154.t1.cds;Parent=g154.t1 >! chrI AUGUSTUS CDS 929947 930089 0.83 + 0 ID=g154.t1.cds;Parent=g154.t1 >*************** >*** 5511 **** >! chrI AUGUSTUS CDS 931224 931256 0.84 + 0 ID=g154.t1.cds;Parent=g154.t1 >--- 5511 ---- >! chrI AUGUSTUS CDS 931224 931256 0.85 + 0 ID=g154.t1.cds;Parent=g154.t1 >*************** >*** 5513 **** >! chrI AUGUSTUS three_prime_utr 931257 931362 0.65 + . Parent=g154.t1 >--- 5513 ---- >! chrI AUGUSTUS three_prime_utr 931257 931362 0.6 + . Parent=g154.t1 >*************** >*** 5529,5530 **** >! chrI AUGUSTUS gene 931425 939478 0.24 + . ID=g155 >! chrI AUGUSTUS transcript 931425 939478 0.24 + . ID=g155.t1;Parent=g155 >--- 5529,5530 ---- >! chrI AUGUSTUS gene 931425 939478 0.2 + . ID=g155 >! chrI AUGUSTUS transcript 931425 939478 0.2 + . ID=g155.t1;Parent=g155 >*************** >*** 5532 **** >! chrI AUGUSTUS five_prime_utr 931425 931461 0.59 + . Parent=g155.t1 >--- 5532 ---- >! chrI AUGUSTUS five_prime_utr 931425 931461 0.54 + . Parent=g155.t1 >*************** >*** 5541,5542 **** >! chrI AUGUSTUS intron 937920 938442 0.97 + . Parent=g155.t1 >! chrI AUGUSTUS intron 938678 939447 0.43 + . Parent=g155.t1 >--- 5541,5542 ---- >! chrI AUGUSTUS intron 937920 938442 0.94 + . Parent=g155.t1 >! chrI AUGUSTUS intron 938678 939447 0.39 + . Parent=g155.t1 >*************** >*** 5550,5552 **** >! chrI AUGUSTUS CDS 937759 937919 0.97 + 0 ID=g155.t1.cds;Parent=g155.t1 >! chrI AUGUSTUS CDS 938443 938677 0.43 + 1 ID=g155.t1.cds;Parent=g155.t1 >! chrI AUGUSTUS CDS 939448 939453 0.62 + 0 ID=g155.t1.cds;Parent=g155.t1 >--- 5550,5552 ---- >! chrI AUGUSTUS CDS 937759 937919 0.94 + 0 ID=g155.t1.cds;Parent=g155.t1 >! chrI AUGUSTUS CDS 938443 938677 0.37 + 1 ID=g155.t1.cds;Parent=g155.t1 >! chrI AUGUSTUS CDS 939448 939453 0.64 + 0 ID=g155.t1.cds;Parent=g155.t1 >*************** >*** 5554 **** >! chrI AUGUSTUS three_prime_utr 939454 939478 0.58 + . Parent=g155.t1 >--- 5554 ---- >! chrI AUGUSTUS three_prime_utr 939454 939478 0.63 + . Parent=g155.t1 >*************** >*** 5574,5575 **** >! chrI AUGUSTUS gene 939485 940284 0.21 - . ID=g156 >! chrI AUGUSTUS transcript 939485 940284 0.21 - . ID=g156.t1;Parent=g156 >--- 5574,5575 ---- >! chrI AUGUSTUS gene 939485 940284 0.22 - . ID=g156 >! chrI AUGUSTUS transcript 939485 940284 0.22 - . ID=g156.t1;Parent=g156 >*************** >*** 5577 **** >! chrI AUGUSTUS three_prime_utr 939485 939519 0.68 - . Parent=g156.t1 >--- 5577 ---- >! chrI AUGUSTUS three_prime_utr 939485 939519 0.74 - . Parent=g156.t1 >*************** >*** 5579,5581 **** >! chrI AUGUSTUS intron 939745 940164 0.95 - . Parent=g156.t1 >! chrI AUGUSTUS CDS 939520 939744 0.99 - 0 ID=g156.t1.cds;Parent=g156.t1 >! chrI AUGUSTUS CDS 940165 940236 0.96 - 0 ID=g156.t1.cds;Parent=g156.t1 >--- 5579,5581 ---- >! chrI AUGUSTUS intron 939745 940164 0.99 - . Parent=g156.t1 >! chrI AUGUSTUS CDS 939520 939744 1 - 0 ID=g156.t1.cds;Parent=g156.t1 >! chrI AUGUSTUS CDS 940165 940236 0.99 - 0 ID=g156.t1.cds;Parent=g156.t1 >*************** >*** 5583 **** >! chrI AUGUSTUS five_prime_utr 940237 940284 0.35 - . Parent=g156.t1 >--- 5583 ---- >! chrI AUGUSTUS five_prime_utr 940237 940284 0.32 - . Parent=g156.t1 >*************** >*** 5598,5599 **** >! chrI AUGUSTUS gene 940906 941734 0.29 - . ID=g157 >! chrI AUGUSTUS transcript 940906 941734 0.29 - . ID=g157.t1;Parent=g157 >--- 5598,5599 ---- >! chrI AUGUSTUS gene 940906 941734 0.37 - . ID=g157 >! chrI AUGUSTUS transcript 940906 941734 0.37 - . ID=g157.t1;Parent=g157 >*************** >*** 5601 **** >! chrI AUGUSTUS three_prime_utr 940906 940969 0.84 - . Parent=g157.t1 >--- 5601 ---- >! chrI AUGUSTUS three_prime_utr 940906 940969 0.83 - . Parent=g157.t1 >*************** >*** 5605 **** >! chrI AUGUSTUS CDS 941485 941673 0.97 - 0 ID=g157.t1.cds;Parent=g157.t1 >--- 5605 ---- >! chrI AUGUSTUS CDS 941485 941673 0.99 - 0 ID=g157.t1.cds;Parent=g157.t1 >*************** >*** 5607 **** >! chrI AUGUSTUS five_prime_utr 941674 941734 0.35 - . Parent=g157.t1 >--- 5607 ---- >! chrI AUGUSTUS five_prime_utr 941674 941734 0.45 - . Parent=g157.t1 >*************** >*** 5623,5624 **** >! chrI AUGUSTUS gene 942875 947107 0.07 + . ID=g158 >! chrI AUGUSTUS transcript 942875 947107 0.07 + . ID=g158.t1;Parent=g158 >--- 5623,5624 ---- >! chrI AUGUSTUS gene 942875 947107 0.08 + . ID=g158 >! chrI AUGUSTUS transcript 942875 947107 0.08 + . ID=g158.t1;Parent=g158 >*************** >*** 5626 **** >! chrI AUGUSTUS five_prime_utr 942875 942902 0.29 + . Parent=g158.t1 >--- 5626 ---- >! chrI AUGUSTUS five_prime_utr 942875 942902 0.25 + . Parent=g158.t1 >*************** >*** 5628,5629 **** >! chrI AUGUSTUS intron 943022 943077 0.83 + . Parent=g158.t1 >! chrI AUGUSTUS intron 943205 944076 1 + . Parent=g158.t1 >--- 5628,5629 ---- >! chrI AUGUSTUS intron 943022 943077 0.78 + . Parent=g158.t1 >! chrI AUGUSTUS intron 943205 944076 0.98 + . Parent=g158.t1 >*************** >*** 5632,5635 **** >! chrI AUGUSTUS CDS 942903 943021 0.78 + 0 ID=g158.t1.cds;Parent=g158.t1 >! chrI AUGUSTUS CDS 943078 943204 1 + 1 ID=g158.t1.cds;Parent=g158.t1 >! chrI AUGUSTUS CDS 944077 944223 1 + 0 ID=g158.t1.cds;Parent=g158.t1 >! chrI AUGUSTUS CDS 944275 944382 0.96 + 0 ID=g158.t1.cds;Parent=g158.t1 >--- 5632,5635 ---- >! chrI AUGUSTUS CDS 942903 943021 0.6 + 0 ID=g158.t1.cds;Parent=g158.t1 >! chrI AUGUSTUS CDS 943078 943204 0.98 + 1 ID=g158.t1.cds;Parent=g158.t1 >! chrI AUGUSTUS CDS 944077 944223 0.98 + 0 ID=g158.t1.cds;Parent=g158.t1 >! chrI AUGUSTUS CDS 944275 944382 0.95 + 0 ID=g158.t1.cds;Parent=g158.t1 >*************** >*** 5638 **** >! chrI AUGUSTUS three_prime_utr 946939 947107 0.36 + . Parent=g158.t1 >--- 5638 ---- >! chrI AUGUSTUS three_prime_utr 946939 947107 0.44 + . Parent=g158.t1 >*************** >*** 5656,5657 **** >! chrI AUGUSTUS gene 948405 948752 0.9 + . ID=g159 >! chrI AUGUSTUS transcript 948405 948752 0.9 + . ID=g159.t1;Parent=g159 >--- 5656,5657 ---- >! chrI AUGUSTUS gene 948405 948752 0.89 + . ID=g159 >! chrI AUGUSTUS transcript 948405 948752 0.89 + . ID=g159.t1;Parent=g159 >*************** >*** 5663 **** >! chrI AUGUSTUS three_prime_utr 948694 948752 1 + . Parent=g159.t1 >--- 5663 ---- >! chrI AUGUSTUS three_prime_utr 948694 948752 0.99 + . Parent=g159.t1 >*************** >*** 5678,5679 **** >! chrI AUGUSTUS gene 949597 957954 0.17 - . ID=g160 >! chrI AUGUSTUS transcript 949597 957954 0.17 - . ID=g160.t1;Parent=g160 >--- 5678,5679 ---- >! chrI AUGUSTUS gene 949597 957954 0.21 - . ID=g160 >! chrI AUGUSTUS transcript 949597 957954 0.21 - . ID=g160.t1;Parent=g160 >*************** >*** 5681 **** >! chrI AUGUSTUS three_prime_utr 949597 949975 1 - . Parent=g160.t1 >--- 5681 ---- >! chrI AUGUSTUS three_prime_utr 949597 949975 0.99 - . Parent=g160.t1 >*************** >*** 5687 **** >! chrI AUGUSTUS intron 951771 951882 0.99 - . Parent=g160.t1 >--- 5687 ---- >! chrI AUGUSTUS intron 951771 951882 0.96 - . Parent=g160.t1 >*************** >*** 5689 **** >! chrI AUGUSTUS intron 952349 953079 1 - . Parent=g160.t1 >--- 5689 ---- >! chrI AUGUSTUS intron 952349 953079 0.99 - . Parent=g160.t1 >*************** >*** 5691 **** >! chrI AUGUSTUS intron 954945 955331 0.84 - . Parent=g160.t1 >--- 5691 ---- >! chrI AUGUSTUS intron 954945 955331 0.86 - . Parent=g160.t1 >*************** >*** 5694 **** >! chrI AUGUSTUS intron 956974 957792 0.99 - . Parent=g160.t1 >--- 5694 ---- >! chrI AUGUSTUS intron 956974 957792 0.95 - . Parent=g160.t1 >*************** >*** 5699 **** >! chrI AUGUSTUS CDS 951673 951770 0.99 - 2 ID=g160.t1.cds;Parent=g160.t1 >--- 5699 ---- >! chrI AUGUSTUS CDS 951673 951770 0.96 - 2 ID=g160.t1.cds;Parent=g160.t1 >*************** >*** 5702,5703 **** >! chrI AUGUSTUS CDS 953080 953972 0.93 - 1 ID=g160.t1.cds;Parent=g160.t1 >! chrI AUGUSTUS CDS 954834 954944 0.83 - 1 ID=g160.t1.cds;Parent=g160.t1 >--- 5702,5703 ---- >! chrI AUGUSTUS CDS 953080 953972 0.92 - 1 ID=g160.t1.cds;Parent=g160.t1 >! chrI AUGUSTUS CDS 954834 954944 0.85 - 1 ID=g160.t1.cds;Parent=g160.t1 >*************** >*** 5709 **** >! chrI AUGUSTUS five_prime_utr 957869 957954 0.24 - . Parent=g160.t1 >--- 5709 ---- >! chrI AUGUSTUS five_prime_utr 957869 957954 0.29 - . Parent=g160.t1 >*************** >*** 5734,5735 **** >! chrI AUGUSTUS gene 981656 995734 0.01 - . ID=g161 >! chrI AUGUSTUS transcript 981656 995734 0.01 - . ID=g161.t1;Parent=g161 >--- 5734,5735 ---- >! chrI AUGUSTUS gene 981656 995734 0.03 - . ID=g161 >! chrI AUGUSTUS transcript 981656 995734 0.03 - . ID=g161.t1;Parent=g161 >*************** >*** 5737 **** >! chrI AUGUSTUS three_prime_utr 981656 981735 0.19 - . Parent=g161.t1 >--- 5737 ---- >! chrI AUGUSTUS three_prime_utr 981656 981735 0.18 - . Parent=g161.t1 >*************** >*** 5740,5741 **** >! chrI AUGUSTUS intron 982116 983000 0.98 - . Parent=g161.t1 >! chrI AUGUSTUS intron 983078 983371 0.65 - . Parent=g161.t1 >--- 5740,5741 ---- >! chrI AUGUSTUS intron 982116 983000 0.99 - . Parent=g161.t1 >! chrI AUGUSTUS intron 983078 983371 0.58 - . Parent=g161.t1 >*************** >*** 5743,5748 **** >! chrI AUGUSTUS intron 984185 984766 0.88 - . Parent=g161.t1 >! chrI AUGUSTUS intron 984981 986240 0.96 - . Parent=g161.t1 >! chrI AUGUSTUS intron 986384 986992 0.99 - . Parent=g161.t1 >! chrI AUGUSTUS intron 987064 987130 0.91 - . Parent=g161.t1 >! chrI AUGUSTUS intron 987196 987241 0.93 - . Parent=g161.t1 >! chrI AUGUSTUS intron 987381 988234 0.91 - . Parent=g161.t1 >--- 5743,5748 ---- >! chrI AUGUSTUS intron 984185 984766 0.8 - . Parent=g161.t1 >! chrI AUGUSTUS intron 984981 986240 0.92 - . Parent=g161.t1 >! chrI AUGUSTUS intron 986384 986992 1 - . Parent=g161.t1 >! chrI AUGUSTUS intron 987064 987130 0.94 - . Parent=g161.t1 >! chrI AUGUSTUS intron 987196 987241 0.97 - . Parent=g161.t1 >! chrI AUGUSTUS intron 987381 988234 0.9 - . Parent=g161.t1 >*************** >*** 5750,5751 **** >! chrI AUGUSTUS intron 988666 988708 0.96 - . Parent=g161.t1 >! chrI AUGUSTUS intron 988820 990663 0.95 - . Parent=g161.t1 >--- 5750,5751 ---- >! chrI AUGUSTUS intron 988666 988708 0.99 - . Parent=g161.t1 >! chrI AUGUSTUS intron 988820 990663 0.99 - . Parent=g161.t1 >*************** >*** 5754 **** >! chrI AUGUSTUS intron 994350 995245 1 - . Parent=g161.t1 >--- 5754 ---- >! chrI AUGUSTUS intron 994350 995245 0.99 - . Parent=g161.t1 >*************** >*** 5756 **** >! chrI AUGUSTUS intron 995545 995592 0.7 - . Parent=g161.t1 >--- 5756 ---- >! chrI AUGUSTUS intron 995545 995592 0.74 - . Parent=g161.t1 >*************** >*** 5759,5760 **** >! chrI AUGUSTUS CDS 983001 983077 0.8 - 1 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 983372 983532 0.6 - 0 ID=g161.t1.cds;Parent=g161.t1 >--- 5759,5760 ---- >! chrI AUGUSTUS CDS 983001 983077 0.79 - 1 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 983372 983532 0.53 - 0 ID=g161.t1.cds;Parent=g161.t1 >*************** >*** 5762,5766 **** >! chrI AUGUSTUS CDS 984767 984980 0.88 - 2 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 986241 986383 0.96 - 1 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 986993 987063 0.99 - 0 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 987131 987195 0.91 - 2 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 987242 987380 0.88 - 0 ID=g161.t1.cds;Parent=g161.t1 >--- 5762,5766 ---- >! chrI AUGUSTUS CDS 984767 984980 0.78 - 2 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 986241 986383 0.94 - 1 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 986993 987063 1 - 0 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 987131 987195 0.94 - 2 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 987242 987380 0.9 - 0 ID=g161.t1.cds;Parent=g161.t1 >*************** >*** 5769 **** >! chrI AUGUSTUS CDS 988709 988819 0.95 - 1 ID=g161.t1.cds;Parent=g161.t1 >--- 5769 ---- >! chrI AUGUSTUS CDS 988709 988819 0.99 - 1 ID=g161.t1.cds;Parent=g161.t1 >*************** >*** 5772,5775 **** >! chrI AUGUSTUS CDS 993912 994349 0.99 - 0 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 995246 995419 1 - 0 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 995482 995544 0.71 - 0 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 995593 995700 0.61 - 0 ID=g161.t1.cds;Parent=g161.t1 >--- 5772,5775 ---- >! chrI AUGUSTUS CDS 993912 994349 1 - 0 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 995246 995419 0.99 - 0 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 995482 995544 0.74 - 0 ID=g161.t1.cds;Parent=g161.t1 >! chrI AUGUSTUS CDS 995593 995700 0.55 - 0 ID=g161.t1.cds;Parent=g161.t1 >*************** >*** 5777 **** >! chrI AUGUSTUS five_prime_utr 995701 995734 0.34 - . Parent=g161.t1 >--- 5777 ---- >! chrI AUGUSTUS five_prime_utr 995701 995734 0.35 - . Parent=g161.t1 >*************** >*** 5802,5803 **** >! chrI AUGUSTUS gene 996325 999559 0.22 + . ID=g162 >! chrI AUGUSTUS transcript 996325 999559 0.22 + . ID=g162.t1;Parent=g162 >--- 5802,5803 ---- >! chrI AUGUSTUS gene 996325 999559 0.29 + . ID=g162 >! chrI AUGUSTUS transcript 996325 999559 0.29 + . ID=g162.t1;Parent=g162 >*************** >*** 5805 **** >! chrI AUGUSTUS five_prime_utr 996325 996510 0.34 + . Parent=g162.t1 >--- 5805 ---- >! chrI AUGUSTUS five_prime_utr 996325 996510 0.38 + . Parent=g162.t1 >*************** >*** 5813 **** >! chrI AUGUSTUS CDS 999166 999520 0.97 + 1 ID=g162.t1.cds;Parent=g162.t1 >--- 5813 ---- >! chrI AUGUSTUS CDS 999166 999520 0.99 + 1 ID=g162.t1.cds;Parent=g162.t1 >*************** >*** 5815 **** >! chrI AUGUSTUS three_prime_utr 999521 999559 0.81 + . Parent=g162.t1 >--- 5815 ---- >! chrI AUGUSTUS three_prime_utr 999521 999559 0.85 + . Parent=g162.t1 > > >====================================================================== >FAIL: test_cgp (__main__.TestAugustus) >---------------------------------------------------------------------- >Traceback (most recent call last): > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 562, in test_cgp > self.assertEqualFolders(reffolder, resfolder, > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders > self.assertEqual(diff, '', diff) >AssertionError: '*** ../../tests/examples/expected_results[5307 chars]";\n' != '' >Diff is 5122 characters long. Set self.maxDiff to None to see it. : *** ../../tests/examples/expected_results/test_cgp/output.txt >--- ../../tests/examples/results/test_cgp/output.txt >*************** >*** 29,32 **** >! Found 2566 ECs on species hg19 >! Found 2217 ECs on species mm9 >! Found 2643 ECs on species bosTau4 >! Found 2088 ECs on species galGal3 >--- 29,32 ---- >! Found 2654 ECs on species hg19 >! Found 2289 ECs on species mm9 >! Found 2753 ECs on species bosTau4 >! Found 2218 ECs on species galGal3 >*************** >*** 34 **** >! Found 141 ortho exons >--- 34 ---- >! Found 150 ortho exons >*************** >*** 49,54 **** >! 0 0 0 96.42318205 137.9112869 4 >! 0 1 10.37202622 127.1016117 168.5897175 34 >! 0 2 1.220238405 127.1016026 149.0658933 16 >! 0 3 1.372767597 127.1016041 127.1016136 16 >! 0 4 1.192093046e-07 127.1016017 127.1016093 16 >! dual decomposition reduced initial duality gap of 30.67842727 to 0 (to 0%) >--- 49,54 ---- >! 0 0 0 87.96290735 129.4510122 4 >! 0 1 10.37202622 117.5470262 159.035132 34 >! 0 2 1.220238405 117.5470134 139.511304 16 >! 0 3 1.372767359 117.5470234 117.5470367 16 >! 0 4 6.556511067e-07 117.5470122 117.547015 16 >! dual decomposition reduced initial duality gap of 29.58410769 to 0 (to 0%) >*** ../../tests/examples/expected_results/test_cgp/mm9.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp/mm9.cgp.filtered.gff >*************** >*** 8 **** >! chr16 AUGUSTUS CDS 4520 4784 1 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 8 ---- >! chr16 AUGUSTUS CDS 4520 4784 0.98 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 10,14 **** >! chr16 AUGUSTUS CDS 6683 6841 0.75 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 8753 8802 0.78 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 10154 10302 0.93 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 13728 14019 0.24 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 22188 22369 1 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 10,14 ---- >! chr16 AUGUSTUS CDS 6683 6841 0.76 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 8753 8802 0.74 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 10154 10302 0.91 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 13728 14019 0.23 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 22188 22369 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; >*** ../../tests/examples/expected_results/test_cgp/hg19.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp/hg19.cgp.filtered.gff >*************** >*** 7 **** >! chr21 AUGUSTUS CDS 2032 3191 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; >--- 7 ---- >! chr21 AUGUSTUS CDS 2032 3191 1 - 2 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 10,12 **** >! chr21 AUGUSTUS CDS 7807 7965 0.76 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr21 AUGUSTUS CDS 10348 10397 1 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr21 AUGUSTUS CDS 12291 12439 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 10,12 ---- >! chr21 AUGUSTUS CDS 7807 7965 0.74 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr21 AUGUSTUS CDS 10348 10397 0.99 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr21 AUGUSTUS CDS 12291 12439 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; >*** ../../tests/examples/expected_results/test_cgp/galGal3.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp/galGal3.cgp.filtered.gff >*************** >*** 9,10 **** >! chr1 AUGUSTUS CDS 3682 3788 1 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 4747 4905 0.49 - 2 transcript_id "g1.t1"; gene_id "g1"; >--- 9,10 ---- >! chr1 AUGUSTUS CDS 3682 3788 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 4747 4905 0.43 - 2 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 12 **** >! chr1 AUGUSTUS CDS 6805 6953 0.76 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 12 ---- >! chr1 AUGUSTUS CDS 6805 6953 0.75 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 14 **** >! chr1 AUGUSTUS CDS 20606 20787 0.78 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 14 ---- >! chr1 AUGUSTUS CDS 20606 20787 0.68 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 31 **** >! chr1 AUGUSTUS CDS 20923 21195 0.88 + 0 transcript_id "g2.t1"; gene_id "g2"; >--- 31 ---- >! chr1 AUGUSTUS CDS 20923 21195 0.83 + 0 transcript_id "g2.t1"; gene_id "g2"; >*** ../../tests/examples/expected_results/test_cgp/bosTau4.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp/bosTau4.cgp.filtered.gff >*************** >*** 7 **** >! chr1 AUGUSTUS CDS 1935 3094 0.92 - 2 transcript_id "g1.t1"; gene_id "g1"; >--- 7 ---- >! chr1 AUGUSTUS CDS 1935 3094 0.96 - 2 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 13,14 **** >! chr1 AUGUSTUS CDS 16603 16894 0.96 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 26587 26768 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 13,14 ---- >! chr1 AUGUSTUS CDS 16603 16894 0.97 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 26587 26768 0.97 - 0 transcript_id "g1.t1"; gene_id "g1"; > > >====================================================================== >FAIL: test_cgp_sqlite (__main__.TestAugustus) >---------------------------------------------------------------------- >Traceback (most recent call last): > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 566, in test_cgp_sqlite > self.cgp_with_db_preparation(False, False) > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 656, in cgp_with_db_preparation > self.cgp_with_db_execution(resfolder, reffolder, *args) > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 617, in cgp_with_db_execution > self.assertEqualFolders(reffolder, resfolder, > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders > self.assertEqual(diff, '', diff) >AssertionError: '*** ../../tests/examples/expected_results[5421 chars]";\n' != '' >Diff is 5236 characters long. Set self.maxDiff to None to see it. : *** ../../tests/examples/expected_results/test_cgp_with_db/aug.out >--- ../../tests/examples/results/test_cgp_with_db/aug.out >*************** >*** 25,28 **** >! Found 2566 ECs on species hg19 >! Found 2217 ECs on species mm9 >! Found 2643 ECs on species bosTau4 >! Found 2088 ECs on species galGal3 >--- 25,28 ---- >! Found 2654 ECs on species hg19 >! Found 2289 ECs on species mm9 >! Found 2753 ECs on species bosTau4 >! Found 2218 ECs on species galGal3 >*************** >*** 30 **** >! Found 141 ortho exons >--- 30 ---- >! Found 150 ortho exons >*************** >*** 45,50 **** >! 0 0 0 96.42318205 137.9112869 4 >! 0 1 10.37202622 127.1016117 168.5897175 34 >! 0 2 1.220238405 127.1016026 149.0658933 16 >! 0 3 1.372767597 127.1016041 127.1016136 16 >! 0 4 1.192093046e-07 127.1016017 127.1016093 16 >! dual decomposition reduced initial duality gap of 30.67842727 to 0 (to 0%) >--- 45,50 ---- >! 0 0 0 87.96290735 129.4510122 4 >! 0 1 10.37202622 117.5470262 159.035132 34 >! 0 2 1.220238405 117.5470134 139.511304 16 >! 0 3 1.372767359 117.5470234 117.5470367 16 >! 0 4 6.556511067e-07 117.5470122 117.547015 16 >! dual decomposition reduced initial duality gap of 29.58410769 to 0 (to 0%) >*** ../../tests/examples/expected_results/test_cgp_with_db/pred/mm9.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp_with_db/pred/mm9.cgp.filtered.gff >*************** >*** 8 **** >! chr16 AUGUSTUS CDS 4520 4784 1 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 8 ---- >! chr16 AUGUSTUS CDS 4520 4784 0.98 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 10,14 **** >! chr16 AUGUSTUS CDS 6683 6841 0.75 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 8753 8802 0.78 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 10154 10302 0.93 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 13728 14019 0.24 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 22188 22369 1 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 10,14 ---- >! chr16 AUGUSTUS CDS 6683 6841 0.76 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 8753 8802 0.74 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 10154 10302 0.91 - 0 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 13728 14019 0.23 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr16 AUGUSTUS CDS 22188 22369 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; >*** ../../tests/examples/expected_results/test_cgp_with_db/pred/hg19.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp_with_db/pred/hg19.cgp.filtered.gff >*************** >*** 7 **** >! chr21 AUGUSTUS CDS 2032 3191 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; >--- 7 ---- >! chr21 AUGUSTUS CDS 2032 3191 1 - 2 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 10,12 **** >! chr21 AUGUSTUS CDS 7807 7965 0.76 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr21 AUGUSTUS CDS 10348 10397 1 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr21 AUGUSTUS CDS 12291 12439 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 10,12 ---- >! chr21 AUGUSTUS CDS 7807 7965 0.74 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr21 AUGUSTUS CDS 10348 10397 0.99 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr21 AUGUSTUS CDS 12291 12439 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; >*** ../../tests/examples/expected_results/test_cgp_with_db/pred/galGal3.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp_with_db/pred/galGal3.cgp.filtered.gff >*************** >*** 9,10 **** >! chr1 AUGUSTUS CDS 3682 3788 1 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 4747 4905 0.49 - 2 transcript_id "g1.t1"; gene_id "g1"; >--- 9,10 ---- >! chr1 AUGUSTUS CDS 3682 3788 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 4747 4905 0.43 - 2 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 12 **** >! chr1 AUGUSTUS CDS 6805 6953 0.76 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 12 ---- >! chr1 AUGUSTUS CDS 6805 6953 0.75 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 14 **** >! chr1 AUGUSTUS CDS 20606 20787 0.78 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 14 ---- >! chr1 AUGUSTUS CDS 20606 20787 0.68 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 39 **** >! chr1 AUGUSTUS CDS 20923 21195 0.88 + 0 transcript_id "g2.t1"; gene_id "g2"; >--- 39 ---- >! chr1 AUGUSTUS CDS 20923 21195 0.83 + 0 transcript_id "g2.t1"; gene_id "g2"; >*** ../../tests/examples/expected_results/test_cgp_with_db/pred/bosTau4.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp_with_db/pred/bosTau4.cgp.filtered.gff >*************** >*** 7 **** >! chr1 AUGUSTUS CDS 1935 3094 0.92 - 2 transcript_id "g1.t1"; gene_id "g1"; >--- 7 ---- >! chr1 AUGUSTUS CDS 1935 3094 0.96 - 2 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 13,14 **** >! chr1 AUGUSTUS CDS 16603 16894 0.96 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 26587 26768 0.96 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 13,14 ---- >! chr1 AUGUSTUS CDS 16603 16894 0.97 - 1 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 26587 26768 0.97 - 0 transcript_id "g1.t1"; gene_id "g1"; > > >====================================================================== >FAIL: test_cgp_sqlite_hints (__main__.TestAugustus) >---------------------------------------------------------------------- >Traceback (most recent call last): > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 569, in test_cgp_sqlite_hints > self.cgp_with_db_preparation(True, False) > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 656, in cgp_with_db_preparation > self.cgp_with_db_execution(resfolder, reffolder, *args) > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 617, in cgp_with_db_execution > self.assertEqualFolders(reffolder, resfolder, > File "/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0/tests/examples/./testcases.py", line 285, in assertEqualFolders > self.assertEqual(diff, '', diff) >AssertionError: '*** ../../tests/examples/expected_results[4451 chars]";\n' != '' >Diff is 4306 characters long. Set self.maxDiff to None to see it. : *** ../../tests/examples/expected_results/test_cgp_with_db_hints/aug.out >--- ../../tests/examples/results/test_cgp_with_db_hints/aug.out >*************** >*** 29,32 **** >! Found 2546 ECs on species hg19 >! Found 2196 ECs on species mm9 >! Found 2638 ECs on species bosTau4 >! Found 2085 ECs on species galGal3 >--- 29,32 ---- >! Found 2637 ECs on species hg19 >! Found 2266 ECs on species mm9 >! Found 2746 ECs on species bosTau4 >! Found 2213 ECs on species galGal3 >*************** >*** 34 **** >! Found 137 ortho exons >--- 34 ---- >! Found 144 ortho exons >*************** >*** 49,60 **** >! 0 0 0 18750.59819 18760.55449 1 >! 0 1 9.956299896 18756.63172 18766.58802 30 >! 0 2 0.3318766594 18756.63063 18765.25942 4 >! 0 3 2.156924859 18756.63129 18756.63239 4 >! 0 4 0.0001665502787 18756.63147 18756.6319 4 >! 0 5 4.447996616e-05 18756.63152 18756.63177 4 >! 0 6 1.110136509e-05 18756.63152 18756.63172 4 >! 0 7 6.109476089e-07 18756.63152 18756.63172 4 >! 0 8 6.109476089e-07 18756.63152 18756.63172 4 >! 0 9 6.109476089e-07 18756.63153 18756.63172 4 >! 0 10 6.109476089e-07 18756.63152 18756.63172 4 >! dual decomposition reduced initial duality gap of 6.033529932 to 0 (to 0%) >--- 49,60 ---- >! 0 0 0 18745.63044 18755.58674 1 >! 0 1 9.956299896 18752.03644 18761.99274 30 >! 0 2 0.3318766594 18752.03536 18760.66416 4 >! 0 3 2.156928673 18752.03605 18752.03713 4 >! 0 4 0.0001713186502 18752.03621 18752.03661 4 >! 0 5 4.06652689e-05 18752.03626 18752.03649 4 >! 0 6 1.110136509e-05 18752.03627 18752.03645 4 >! 0 7 2.518296242e-06 18752.03627 18752.03645 4 >! 0 8 6.109476089e-07 18752.03627 18752.03645 4 >! 0 9 6.109476089e-07 18752.03627 18752.03645 4 >! 0 10 6.109476089e-07 18752.03627 18752.03644 4 >! dual decomposition reduced initial duality gap of 6.406004602 to 0 (to 0%) >*** ../../tests/examples/expected_results/test_cgp_with_db_hints/pred/galGal3.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp_with_db_hints/pred/galGal3.cgp.filtered.gff >*************** >*** 7 **** >! chr1 AUGUSTUS CDS 981 2158 1 - 2 transcript_id "g1.t1"; gene_id "g1"; >--- 7 ---- >! chr1 AUGUSTUS CDS 981 2158 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 9,10 **** >! chr1 AUGUSTUS CDS 3682 3788 0.98 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 4747 4905 0.44 - 2 transcript_id "g1.t1"; gene_id "g1"; >--- 9,10 ---- >! chr1 AUGUSTUS CDS 3682 3788 0.96 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 4747 4905 0.52 - 2 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 12 **** >! chr1 AUGUSTUS CDS 6805 6953 0.82 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 12 ---- >! chr1 AUGUSTUS CDS 6805 6953 0.78 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 14 **** >! chr1 AUGUSTUS CDS 20606 20787 0.68 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 14 ---- >! chr1 AUGUSTUS CDS 20606 20787 0.72 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 39 **** >! chr1 AUGUSTUS CDS 20923 21195 0.86 + 0 transcript_id "g2.t1"; gene_id "g2"; >--- 39 ---- >! chr1 AUGUSTUS CDS 20923 21195 0.84 + 0 transcript_id "g2.t1"; gene_id "g2"; >*** ../../tests/examples/expected_results/test_cgp_with_db_hints/pred/bosTau4.cgp.filtered.gff >--- ../../tests/examples/results/test_cgp_with_db_hints/pred/bosTau4.cgp.filtered.gff >*************** >*** 7,8 **** >! chr1 AUGUSTUS CDS 1935 3094 0.97 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 4798 5059 0.99 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 7,8 ---- >! chr1 AUGUSTUS CDS 1935 3094 0.98 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 4798 5059 1 - 0 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 10,11 **** >! chr1 AUGUSTUS CDS 7220 7378 1 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 9635 9684 1 - 1 transcript_id "g1.t1"; gene_id "g1"; >--- 10,11 ---- >! chr1 AUGUSTUS CDS 7220 7378 0.99 - 2 transcript_id "g1.t1"; gene_id "g1"; >! chr1 AUGUSTUS CDS 9635 9684 0.98 - 1 transcript_id "g1.t1"; gene_id "g1"; >*************** >*** 14 **** >! chr1 AUGUSTUS CDS 26587 26768 0.98 - 0 transcript_id "g1.t1"; gene_id "g1"; >--- 14 ---- >! chr1 AUGUSTUS CDS 26587 26768 0.97 - 0 transcript_id "g1.t1"; gene_id "g1"; > > >---------------------------------------------------------------------- >Ran 8 tests in 302.305s > >FAILED (failures=6) >make: *** [Makefile:45: test] Error 1 > * ERROR: sci-biology/augustus-3.4.0-r2::gentoo failed (test phase): > * Make test failed. See above for details. > * > * Call stack: > * ebuild.sh, line 122: Called src_test > * environment, line 1414: Called default > * phase-functions.sh, line 872: Called default_src_test > * phase-functions.sh, line 901: Called __eapi0_src_test > * phase-helpers.sh, line 836: Called die > * The specific snippet of code: > * ${emake_cmd} ${internal_opts} test || \ > * die "Make test failed. See above for details." > * > * If you need support, post the output of `emerge --info '=sci-biology/augustus-3.4.0-r2::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/augustus-3.4.0-r2::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-biology/augustus-3.4.0-r2:20220924-170307.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0' > * S: '/var/tmp/portage/sci-biology/augustus-3.4.0-r2/work/Augustus-3.4.0' >
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