sci-chemistry:molsketch-0.4.1-r1:20220103-124620.log

sci-chemistry:molsketch-0.4.1-r1:20220103-124620.log (text/plain), 6.15 KB, created by Toralf Förster on 2022-01-03 13:53:52 UTC

 * Package:    sci-chemistry/molsketch-0.4.1-r1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox

>>> Unpacking source...
>>> Unpacking Molsketch-0.4.1-src.tar.gz to /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build"
 * Applying molsketch-0.3.0-_DEFAULT_SOURCE.patch ...
patching file CMakeLists.txt
Hunk #1 succeeded at 21 with fuzz 1 (offset 2 lines).
 [ ok ]
 * Applying molsketch-0.4.1-more-quotes.patch ...
 [ ok ]
 * Hardcoded definition(s) removed in CMakeLists.txt:
 *  set(CMAKE_BUILD_TYPE Debug)
 *  set(CMAKE_INSTALL_PREFIX ${MSK_INSTALL_PREFIX})
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1 ...
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build"
cmake -C /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DOPENBABEL2_INCLUDE_DIR=/usr/include/openbabel-2.0 -DMSK_INSTALL_PREFIX=/usr -DMSK_INSTALL_DOCS=/usr/share/doc/molsketch-0.4.1-r1 -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1
loading initial cache file /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build/gentoo_common_config.cmake
CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Deprecation Warning at CMakeLists.txt:3 (cmake_policy):
  The OLD behavior for policy CMP0005 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at CMakeLists.txt:4 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- The C compiler identification is GNU 11.2.1
-- The CXX compiler identification is GNU 11.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Using Qt5. Use option "-D FORCEQt4=TRUE" to switch to Qt4.
-- ======= Welcome to molsKetch build =======
-- Sources in: /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1
-- Installation settings and corresponding cmake variables (use "-D <variableName>=<value>" to change):
--     Global install prefix: MSK_INSTALL_PREFIX = /usr
--     Executable: MSK_INSTALL_BINS = /usr/bin
--     Library install folder: MSK_INSTALL_LIBS = /usr/lib64
--     Headers install folder: MSK_INSTALL_INCLUDES = /usr/include/molsketch
--     Documentation install folder: MSK_INSTALL_DOCS = /usr/share/doc/molsketch-0.4.1-r1
--     Version: MSK_VERSION = 0.4.1
--     Nickname: MSK_VERSION_NICK = Beryllium-7
--     Build static: MSK_STATIC_LIB = false
--     Use OpenBabel: MSK_OPEN_BABEL = true
-- Found PkgConfig: /usr/bin/x86_64-pc-linux-gnu-pkg-config (found version "1.8.0") 
-- Checking for module 'openbabel-2.0'
--   Package 'openbabel-2.0', required by 'virtual:world', not found
-- Querying include dir: 
CMake Error at cmake/modules/FindOpenBabel2.cmake:79 (message):
  Could NOT find OpenBabel2
Call Stack (most recent call first):
  obabeliface/CMakeLists.txt:36 (find_package)


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build/CMakeFiles/CMakeOutput.log".
 * ERROR: sci-chemistry/molsketch-0.4.1-r1::gentoo failed (configure phase):
 *   cmake failed
 * 
 * Call stack:
 *     ebuild.sh, line  127:  Called src_configure
 *   environment, line 2164:  Called cmake_src_configure
 *   environment, line  981:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/molsketch-0.4.1-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/molsketch-0.4.1-r1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-chemistry:molsketch-0.4.1-r1:20220103-124620.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build'
 * S: '/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1'