* Package: sci-chemistry/molsketch-0.4.1-r1 * Repository: gentoo * Maintainer: sci-chemistry@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking Molsketch-0.4.1-src.tar.gz to /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work >>> Preparing source in /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1 ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1" * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build" * Applying molsketch-0.3.0-_DEFAULT_SOURCE.patch ... patching file CMakeLists.txt Hunk #1 succeeded at 21 with fuzz 1 (offset 2 lines). [ ok ] * Applying molsketch-0.4.1-more-quotes.patch ... [ ok ] * Hardcoded definition(s) removed in CMakeLists.txt: * set(CMAKE_BUILD_TYPE Debug) * set(CMAKE_INSTALL_PREFIX ${MSK_INSTALL_PREFIX}) >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1 ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1" * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build" cmake -C /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DOPENBABEL2_INCLUDE_DIR=/usr/include/openbabel-2.0 -DMSK_INSTALL_PREFIX=/usr -DMSK_INSTALL_DOCS=/usr/share/doc/molsketch-0.4.1-r1 -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1 loading initial cache file /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build/gentoo_common_config.cmake CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at CMakeLists.txt:3 (cmake_policy): The OLD behavior for policy CMP0005 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. CMake Deprecation Warning at CMakeLists.txt:4 (cmake_policy): The OLD behavior for policy CMP0020 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 11.2.1 -- The CXX compiler identification is GNU 11.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using Qt5. Use option "-D FORCEQt4=TRUE" to switch to Qt4. -- ======= Welcome to molsKetch build ======= -- Sources in: /var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1 -- Installation settings and corresponding cmake variables (use "-D =" to change): -- Global install prefix: MSK_INSTALL_PREFIX = /usr -- Executable: MSK_INSTALL_BINS = /usr/bin -- Library install folder: MSK_INSTALL_LIBS = /usr/lib64 -- Headers install folder: MSK_INSTALL_INCLUDES = /usr/include/molsketch -- Documentation install folder: MSK_INSTALL_DOCS = /usr/share/doc/molsketch-0.4.1-r1 -- Version: MSK_VERSION = 0.4.1 -- Nickname: MSK_VERSION_NICK = Beryllium-7 -- Build static: MSK_STATIC_LIB = false -- Use OpenBabel: MSK_OPEN_BABEL = true -- Found PkgConfig: /usr/bin/x86_64-pc-linux-gnu-pkg-config (found version "1.8.0") -- Checking for module 'openbabel-2.0' -- Package 'openbabel-2.0', required by 'virtual:world', not found -- Querying include dir: CMake Error at cmake/modules/FindOpenBabel2.cmake:79 (message): Could NOT find OpenBabel2 Call Stack (most recent call first): obabeliface/CMakeLists.txt:36 (find_package) -- Configuring incomplete, errors occurred! See also "/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build/CMakeFiles/CMakeOutput.log". * ERROR: sci-chemistry/molsketch-0.4.1-r1::gentoo failed (configure phase): * cmake failed * * Call stack: * ebuild.sh, line 127: Called src_configure * environment, line 2164: Called cmake_src_configure * environment, line 981: Called die * The specific snippet of code: * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; * * If you need support, post the output of `emerge --info '=sci-chemistry/molsketch-0.4.1-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/molsketch-0.4.1-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:molsketch-0.4.1-r1:20220103-124620.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/molsketch-0.4.1_build' * S: '/var/tmp/portage/sci-chemistry/molsketch-0.4.1-r1/work/Molsketch-0.4.1'