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Gentoo's Bugzilla – Attachment 757924 Details for
Bug 828673
sci-chemistry/gromacs-2021.3-r1 - /.../histogramsize.h: error: int64_t does not name a type
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sci-chemistry:gromacs-2021.3-r1:20211209-224150.log
sci-chemistry:gromacs-2021.3-r1:20211209-224150.log (text/plain), 444.04 KB, created by
Toralf Förster
on 2021-12-10 08:48:52 UTC
(
hide
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Description:
sci-chemistry:gromacs-2021.3-r1:20211209-224150.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2021-12-10 08:48:52 UTC
Size:
444.04 KB
patch
obsolete
> * Package: sci-chemistry/gromacs-2021.3-r1 > * Repository: gentoo > * Maintainer: alexxy@gentoo.org sci-chemistry@gentoo.org > * USE: abi_x86_64 amd64 cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 custom-cflags doc double-precision elibc_musl fftw gmxapi gmxapi-legacy hwloc kernel_linux lmfit offensive openmp python_single_target_python3_9 single-precision threads tng userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > * Using python3.9 to build >>>> Unpacking source... >>>> Unpacking gromacs-2021.3.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work >>>> Unpacking manual-2021.3.pdf to /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work >unpack manual-2021.3.pdf: file format not recognized. Ignoring. >>>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3 ... > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_build" > * Hardcoded definition(s) removed in CMakeLists.txt: > * set(CMAKE_INSTALL_PREFIX "/usr/local/gromacs" CACHE STRING "Installation > * set(CMAKE_BUILD_TYPE "Release" CACHE STRING "Choose the type of build, op >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3 ... > * Configuring for float precision > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_float" >cmake -C /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_float/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DGMX_FFT_LIBRARY=fftw3 -DGMX_USE_LMFIT=EXTERNAL -DGMX_X11=no -DGMX_EXTERNAL_BLAS=no -DGMX_EXTERNAL_LAPACK=no -DGMX_OPENMP=yes -DGMX_COOL_QUOTES=yes -DGMX_USE_TNG=yes -DGMX_BUILD_MANUAL=no -DGMX_HWLOC=yes -DGMX_DEFAULT_SUFFIX=off -DGMX_SIMD=AVX2_256 -DGMX_VMD_PLUGIN_PATH=/usr/lib/vmd/plugins/*/molfile/ -DBUILD_TESTING=no -DGMX_BUILD_UNITTESTS=no -DPYTHON_EXECUTABLE=/usr/bin/python3.9 -DGMX_DOUBLE=OFF -DGMX_MPI=OFF -DGMX_THREAD_MPI=yes -DGMXAPI=yes -DGMX_INSTALL_LEGACY_API=yes -DGMX_GPU=OFF -DGMX_BINARY_SUFFIX= -DGMX_LIBS_SUFFIX= -DGMX_PYTHON_PACKAGE=no -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_float/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3 >loading initial cache file /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_float/gentoo_common_config.cmake >-- The C compiler identification is GNU 11.2.0 >-- The CXX compiler identification is GNU 11.2.0 >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Check for working C compiler: /usr/bin/x86_64-gentoo-linux-musl-gcc - skipped >-- Detecting C compile features >-- Detecting C compile features - done >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Check for working CXX compiler: /usr/bin/x86_64-gentoo-linux-musl-g++ - skipped >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Found Python3: /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/temp/python3.9/bin/python3 (found suitable version "3.9.9", minimum required is "3.6") found components: Interpreter >-- Found OpenMP_C: -fopenmp (found version "4.5") >-- Found OpenMP_CXX: -fopenmp (found version "4.5") >-- Found OpenMP: TRUE (found version "4.5") >-- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS >-- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success >-- Performing Test CFLAGS_EXCESS_PREC >-- Performing Test CFLAGS_EXCESS_PREC - Success >-- Performing Test CFLAGS_COPT >-- Performing Test CFLAGS_COPT - Success >-- Performing Test CFLAGS_NOINLINE >-- Performing Test CFLAGS_NOINLINE - Success >-- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS >-- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success >-- Performing Test CXXFLAGS_EXCESS_PREC >-- Performing Test CXXFLAGS_EXCESS_PREC - Success >-- Performing Test CXXFLAGS_COPT >-- Performing Test CXXFLAGS_COPT - Success >-- Performing Test CXXFLAGS_NOINLINE >-- Performing Test CXXFLAGS_NOINLINE - Success >-- Looking for include file unistd.h >-- Looking for include file unistd.h - found >-- Looking for include file pwd.h >-- Looking for include file pwd.h - found >-- Looking for include file dirent.h >-- Looking for include file dirent.h - found >-- Looking for include file time.h >-- Looking for include file time.h - found >-- Looking for include file sys/time.h >-- Looking for include file sys/time.h - found >-- Looking for include file io.h >-- Looking for include file io.h - not found >-- Looking for include file sched.h >-- Looking for include file sched.h - found >-- Looking for include file xmmintrin.h >-- Looking for include file xmmintrin.h - found >-- Looking for gettimeofday >-- Looking for gettimeofday - found >-- Looking for sysconf >-- Looking for sysconf - found >-- Looking for nice >-- Looking for nice - found >-- Looking for fsync >-- Looking for fsync - found >-- Looking for _fileno >-- Looking for _fileno - not found >-- Looking for fileno >-- Looking for fileno - found >-- Looking for _commit >-- Looking for _commit - not found >-- Looking for sigaction >-- Looking for sigaction - found >-- Performing Test HAVE_BUILTIN_CLZ >-- Performing Test HAVE_BUILTIN_CLZ - Success >-- Performing Test HAVE_BUILTIN_CLZLL >-- Performing Test HAVE_BUILTIN_CLZLL - Success >-- Looking for clock_gettime in rt >-- Looking for clock_gettime in rt - found >-- Looking for feenableexcept in m >-- Looking for feenableexcept in m - not found >-- Looking for fedisableexcept in m >-- Looking for fedisableexcept in m - not found >-- Checking for sched.h GNU affinity API >-- Performing Test sched_affinity_compile >-- Performing Test sched_affinity_compile - Success >-- Looking for include file mm_malloc.h >-- Looking for include file mm_malloc.h - found >-- Looking for include file malloc.h >-- Looking for include file malloc.h - found >-- Checking for _mm_malloc() >-- Checking for _mm_malloc() - supported >-- Looking for posix_memalign >-- Looking for posix_memalign - found >-- Looking for memalign >-- Looking for memalign - found >-- Using manually set binary suffix: "" >-- Using manually set library suffix: "" >-- Looking for HWLOC >-- Looking for hwloc_topology_init >-- Looking for hwloc_topology_init - found >-- hwloc version: >-- Found HWLOC: /usr/lib/libhwloc.so (found suitable version "2.5.0", minimum required is "1.5") >-- Looking for pthread.h >-- Looking for pthread.h - found >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success >-- Found Threads: TRUE >-- Looking for C++ include pthread.h >-- Looking for C++ include pthread.h - found >-- Performing Test TEST_ATOMICS >-- Performing Test TEST_ATOMICS - Success >-- Atomic operations found >-- Performing Test PTHREAD_SETAFFINITY >-- Performing Test PTHREAD_SETAFFINITY - Success >-- Checking for GCC x86 inline asm >-- Checking for GCC x86 inline asm - supported >-- Detected build CPU vendor - AMD >-- Detected build CPU brand - AMD Ryzen 9 5950X 16-Core Processor >-- Detected build CPU family - 25 >-- Detected build CPU model - 33 >-- Detected build CPU stepping - 0 >-- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt lahf misalignsse mmx msr nonstop_tsc pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3 >-- Checking for 64-bit off_t >-- Checking for 64-bit off_t - present >-- Checking for fseeko/ftello >-- Checking for fseeko/ftello - present >-- Checking for SIGUSR1 >-- Checking for SIGUSR1 - found >-- Checking for pipe support >-- Checking for system XDR support >-- Checking for system XDR support - not present >-- Performing Test C_mavx2_mfma_FLAG_ACCEPTED >-- Performing Test C_mavx2_mfma_FLAG_ACCEPTED - Success >-- Performing Test C_mavx2_mfma_COMPILE_WORKS >-- Performing Test C_mavx2_mfma_COMPILE_WORKS - Success >-- Performing Test CXX_mavx2_mfma_FLAG_ACCEPTED >-- Performing Test CXX_mavx2_mfma_FLAG_ACCEPTED - Success >-- Performing Test CXX_mavx2_mfma_COMPILE_WORKS >-- Performing Test CXX_mavx2_mfma_COMPILE_WORKS - Success >-- Enabling 256-bit AVX2 SIMD instructions using CXX flags: -mavx2 -mfma >-- Detecting flags to enable runtime detection of AVX-512 units on newer CPUs >-- Performing Test C_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED >-- Performing Test C_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED - Failed >-- Performing Test C_xCORE_AVX512_FLAG_ACCEPTED >-- Performing Test C_xCORE_AVX512_FLAG_ACCEPTED - Failed >-- Performing Test C_mavx512f_mfma_FLAG_ACCEPTED >-- Performing Test C_mavx512f_mfma_FLAG_ACCEPTED - Success >-- Performing Test C_mavx512f_mfma_COMPILE_WORKS >-- Performing Test C_mavx512f_mfma_COMPILE_WORKS - Success >-- Performing Test CXX_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED >-- Performing Test CXX_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED - Failed >-- Performing Test CXX_xCORE_AVX512_FLAG_ACCEPTED >-- Performing Test CXX_xCORE_AVX512_FLAG_ACCEPTED - Failed >-- Performing Test CXX_mavx512f_mfma_FLAG_ACCEPTED >-- Performing Test CXX_mavx512f_mfma_FLAG_ACCEPTED - Success >-- Performing Test CXX_mavx512f_mfma_COMPILE_WORKS >-- Performing Test CXX_mavx512f_mfma_COMPILE_WORKS - Success >-- Detecting flags to enable runtime detection of AVX-512 units on newer CPUs - -mavx512f -mfma >-- Performing Test _Wno_unused_command_line_argument_FLAG_ACCEPTED >-- Performing Test _Wno_unused_command_line_argument_FLAG_ACCEPTED - Success >-- Performing Test _callconv___vectorcall >-- Performing Test _callconv___vectorcall - Failed >-- Performing Test _callconv___regcall >-- Performing Test _callconv___regcall - Failed >-- Performing Test _callconv_ >-- Performing Test _callconv_ - Success >-- Checking for module 'fftw3f' >-- Found fftw3f, version 3.3.10 >-- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so >-- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so - found >-- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so >-- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so - found >-- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so >-- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so - found >-- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so >-- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so - not found >-- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so >-- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so - not found >-- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so >-- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so - found >-- Using external FFT library - FFTW3 >-- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized >-- Found Sphinx: /usr/bin/sphinx-build (found suitable version "4.2.0", minimum required is "1.6.1") found components: pygments >-- Performing Test HAS_NO_STRINGOP_TRUNCATION >-- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success >-- Performing Test HAS_NO_REDUNDANT_MOVE >-- Performing Test HAS_NO_REDUNDANT_MOVE - Success >-- Performing Test HAS_NO_UNUSED >-- Performing Test HAS_NO_UNUSED - Success >-- Performing Test HAS_NO_UNUSED_PARAMETER >-- Performing Test HAS_NO_UNUSED_PARAMETER - Success >-- Performing Test HAS_NO_MISSING_DECLARATIONS >-- Performing Test HAS_NO_MISSING_DECLARATIONS - Success >-- Performing Test HAS_NO_NULL_CONVERSIONS >-- Performing Test HAS_NO_NULL_CONVERSIONS - Success >-- Performing Test HAS_NO_CLASS_MEMACCESS >-- Performing Test HAS_NO_CLASS_MEMACCESS - Success >-- Looking for inttypes.h >-- Looking for inttypes.h - found >-- Performing Test LMFIT_LINKS_OK >-- Performing Test LMFIT_LINKS_OK - Success >CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): > The package name passed to `find_package_handle_standard_args` (lmfit) does > not match the name of the calling package (Lmfit). This can lead to > problems in calling code that expects `find_package` result variables > (e.g., `_FOUND`) to follow a certain pattern. >Call Stack (most recent call first): > cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) > cmake/gmxManageLmfit.cmake:77 (find_package) > src/gromacs/CMakeLists.txt:333 (gmx_manage_lmfit) >This warning is for project developers. Use -Wno-dev to suppress it. > >-- Found lmfit: /usr/include/include (found version "9.0.0") >-- <<< Gentoo configuration >>> >Build type RelWithDebInfo >Install path /usr >Compiler flags: >C -pipe -march=native -fno-diagnostics-color -O2 >C++ -pipe -march=native -fno-diagnostics-color -O2 >Linker flags: >Executable -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Module -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 > >-- Configuring done >-- Generating done >-- Build files have been written to: /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_float > * Configuring for double precision > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3" > * Build directory (BUILD_DIR): "/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_double" >cmake -C /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_double/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DGMX_FFT_LIBRARY=fftw3 -DGMX_USE_LMFIT=EXTERNAL -DGMX_X11=no -DGMX_EXTERNAL_BLAS=no -DGMX_EXTERNAL_LAPACK=no -DGMX_OPENMP=yes -DGMX_COOL_QUOTES=yes -DGMX_USE_TNG=yes -DGMX_BUILD_MANUAL=no -DGMX_HWLOC=yes -DGMX_DEFAULT_SUFFIX=off -DGMX_SIMD=AVX2_256 -DGMX_VMD_PLUGIN_PATH=/usr/lib/vmd/plugins/*/molfile/ -DBUILD_TESTING=no -DGMX_BUILD_UNITTESTS=no -DPYTHON_EXECUTABLE=/usr/bin/python3.9 -DGMX_DOUBLE=ON -DGMX_MPI=OFF -DGMX_THREAD_MPI=yes -DGMXAPI=yes -DGMX_INSTALL_LEGACY_API=yes -DGMX_GPU=OFF -DGMX_BINARY_SUFFIX=_d -DGMX_LIBS_SUFFIX=_d -DGMX_PYTHON_PACKAGE=no -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_double/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3 >loading initial cache file /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_double/gentoo_common_config.cmake >-- The C compiler identification is GNU 11.2.0 >-- The CXX compiler identification is GNU 11.2.0 >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Check for working C compiler: /usr/bin/x86_64-gentoo-linux-musl-gcc - skipped >-- Detecting C compile features >-- Detecting C compile features - done >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Check for working CXX compiler: /usr/bin/x86_64-gentoo-linux-musl-g++ - skipped >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Found Python3: /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/temp/python3.9/bin/python3 (found suitable version "3.9.9", minimum required is "3.6") found components: Interpreter >-- Found OpenMP_C: -fopenmp (found version "4.5") >-- Found OpenMP_CXX: -fopenmp (found version "4.5") >-- Found OpenMP: TRUE (found version "4.5") >-- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS >-- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success >-- Performing Test CFLAGS_EXCESS_PREC >-- Performing Test CFLAGS_EXCESS_PREC - Success >-- Performing Test CFLAGS_COPT >-- Performing Test CFLAGS_COPT - Success >-- Performing Test CFLAGS_NOINLINE >-- Performing Test CFLAGS_NOINLINE - Success >-- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS >-- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success >-- Performing Test CXXFLAGS_EXCESS_PREC >-- Performing Test CXXFLAGS_EXCESS_PREC - Success >-- Performing Test CXXFLAGS_COPT >-- Performing Test CXXFLAGS_COPT - Success >-- Performing Test CXXFLAGS_NOINLINE >-- Performing Test CXXFLAGS_NOINLINE - Success >-- Looking for include file unistd.h >-- Looking for include file unistd.h - found >-- Looking for include file pwd.h >-- Looking for include file pwd.h - found >-- Looking for include file dirent.h >-- Looking for include file dirent.h - found >-- Looking for include file time.h >-- Looking for include file time.h - found >-- Looking for include file sys/time.h >-- Looking for include file sys/time.h - found >-- Looking for include file io.h >-- Looking for include file io.h - not found >-- Looking for include file sched.h >-- Looking for include file sched.h - found >-- Looking for include file xmmintrin.h >-- Looking for include file xmmintrin.h - found >-- Looking for gettimeofday >-- Looking for gettimeofday - found >-- Looking for sysconf >-- Looking for sysconf - found >-- Looking for nice >-- Looking for nice - found >-- Looking for fsync >-- Looking for fsync - found >-- Looking for _fileno >-- Looking for _fileno - not found >-- Looking for fileno >-- Looking for fileno - found >-- Looking for _commit >-- Looking for _commit - not found >-- Looking for sigaction >-- Looking for sigaction - found >-- Performing Test HAVE_BUILTIN_CLZ >-- Performing Test HAVE_BUILTIN_CLZ - Success >-- Performing Test HAVE_BUILTIN_CLZLL >-- Performing Test HAVE_BUILTIN_CLZLL - Success >-- Looking for clock_gettime in rt >-- Looking for clock_gettime in rt - found >-- Looking for feenableexcept in m >-- Looking for feenableexcept in m - not found >-- Looking for fedisableexcept in m >-- Looking for fedisableexcept in m - not found >-- Checking for sched.h GNU affinity API >-- Performing Test sched_affinity_compile >-- Performing Test sched_affinity_compile - Success >-- Looking for include file mm_malloc.h >-- Looking for include file mm_malloc.h - found >-- Looking for include file malloc.h >-- Looking for include file malloc.h - found >-- Checking for _mm_malloc() >-- Checking for _mm_malloc() - supported >-- Looking for posix_memalign >-- Looking for posix_memalign - found >-- Looking for memalign >-- Looking for memalign - found >-- Using manually set binary suffix: "_d" >-- Using manually set library suffix: "_d" >-- Looking for HWLOC >-- Looking for hwloc_topology_init >-- Looking for hwloc_topology_init - found >-- hwloc version: >-- Found HWLOC: /usr/lib/libhwloc.so (found suitable version "2.5.0", minimum required is "1.5") >-- Looking for pthread.h >-- Looking for pthread.h - found >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD >-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success >-- Found Threads: TRUE >-- Looking for C++ include pthread.h >-- Looking for C++ include pthread.h - found >-- Performing Test TEST_ATOMICS >-- Performing Test TEST_ATOMICS - Success >-- Atomic operations found >-- Performing Test PTHREAD_SETAFFINITY >-- Performing Test PTHREAD_SETAFFINITY - Success >-- Checking for GCC x86 inline asm >-- Checking for GCC x86 inline asm - supported >-- Detected build CPU vendor - AMD >-- Detected build CPU brand - AMD Ryzen 9 5950X 16-Core Processor >-- Detected build CPU family - 25 >-- Detected build CPU model - 33 >-- Detected build CPU stepping - 0 >-- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt lahf misalignsse mmx msr nonstop_tsc pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3 >-- Checking for 64-bit off_t >-- Checking for 64-bit off_t - present >-- Checking for fseeko/ftello >-- Checking for fseeko/ftello - present >-- Checking for SIGUSR1 >-- Checking for SIGUSR1 - found >-- Checking for pipe support >-- Checking for system XDR support >-- Checking for system XDR support - not present >-- Performing Test C_mavx2_mfma_FLAG_ACCEPTED >-- Performing Test C_mavx2_mfma_FLAG_ACCEPTED - Success >-- Performing Test C_mavx2_mfma_COMPILE_WORKS >-- Performing Test C_mavx2_mfma_COMPILE_WORKS - Success >-- Performing Test CXX_mavx2_mfma_FLAG_ACCEPTED >-- Performing Test CXX_mavx2_mfma_FLAG_ACCEPTED - Success >-- Performing Test CXX_mavx2_mfma_COMPILE_WORKS >-- Performing Test CXX_mavx2_mfma_COMPILE_WORKS - Success >-- Enabling 256-bit AVX2 SIMD instructions using CXX flags: -mavx2 -mfma >-- Detecting flags to enable runtime detection of AVX-512 units on newer CPUs >-- Performing Test C_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED >-- Performing Test C_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED - Failed >-- Performing Test C_xCORE_AVX512_FLAG_ACCEPTED >-- Performing Test C_xCORE_AVX512_FLAG_ACCEPTED - Failed >-- Performing Test C_mavx512f_mfma_FLAG_ACCEPTED >-- Performing Test C_mavx512f_mfma_FLAG_ACCEPTED - Success >-- Performing Test C_mavx512f_mfma_COMPILE_WORKS >-- Performing Test C_mavx512f_mfma_COMPILE_WORKS - Success >-- Performing Test CXX_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED >-- Performing Test CXX_xCORE_AVX512_qopt_zmm_usage_high_FLAG_ACCEPTED - Failed >-- Performing Test CXX_xCORE_AVX512_FLAG_ACCEPTED >-- Performing Test CXX_xCORE_AVX512_FLAG_ACCEPTED - Failed >-- Performing Test CXX_mavx512f_mfma_FLAG_ACCEPTED >-- Performing Test CXX_mavx512f_mfma_FLAG_ACCEPTED - Success >-- Performing Test CXX_mavx512f_mfma_COMPILE_WORKS >-- Performing Test CXX_mavx512f_mfma_COMPILE_WORKS - Success >-- Detecting flags to enable runtime detection of AVX-512 units on newer CPUs - -mavx512f -mfma >-- Performing Test _Wno_unused_command_line_argument_FLAG_ACCEPTED >-- Performing Test _Wno_unused_command_line_argument_FLAG_ACCEPTED - Success >-- Performing Test _callconv___vectorcall >-- Performing Test _callconv___vectorcall - Failed >-- Performing Test _callconv___regcall >-- Performing Test _callconv___regcall - Failed >-- Performing Test _callconv_ >-- Performing Test _callconv_ - Success >-- Checking for module 'fftw3' >-- Found fftw3, version 3.3.10 >-- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so >-- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so - found >-- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so >-- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so - found >-- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so >-- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so - found >-- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so >-- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so - not found >-- Looking for fftw_have_sse in /usr/lib/libfftw3.so >-- Looking for fftw_have_sse in /usr/lib/libfftw3.so - not found >-- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so >-- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so - found >-- Using external FFT library - FFTW3 >-- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized >-- Found Sphinx: /usr/bin/sphinx-build (found suitable version "4.2.0", minimum required is "1.6.1") found components: pygments >-- Performing Test HAS_NO_STRINGOP_TRUNCATION >-- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success >-- Performing Test HAS_NO_REDUNDANT_MOVE >-- Performing Test HAS_NO_REDUNDANT_MOVE - Success >-- Performing Test HAS_NO_UNUSED >-- Performing Test HAS_NO_UNUSED - Success >-- Performing Test HAS_NO_UNUSED_PARAMETER >-- Performing Test HAS_NO_UNUSED_PARAMETER - Success >-- Performing Test HAS_NO_MISSING_DECLARATIONS >-- Performing Test HAS_NO_MISSING_DECLARATIONS - Success >-- Performing Test HAS_NO_NULL_CONVERSIONS >-- Performing Test HAS_NO_NULL_CONVERSIONS - Success >-- Performing Test HAS_NO_CLASS_MEMACCESS >-- Performing Test HAS_NO_CLASS_MEMACCESS - Success >-- Looking for inttypes.h >-- Looking for inttypes.h - found >-- Performing Test LMFIT_LINKS_OK >-- Performing Test LMFIT_LINKS_OK - Success >CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): > The package name passed to `find_package_handle_standard_args` (lmfit) does > not match the name of the calling package (Lmfit). This can lead to > problems in calling code that expects `find_package` result variables > (e.g., `_FOUND`) to follow a certain pattern. >Call Stack (most recent call first): > cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) > cmake/gmxManageLmfit.cmake:77 (find_package) > src/gromacs/CMakeLists.txt:333 (gmx_manage_lmfit) >This warning is for project developers. Use -Wno-dev to suppress it. > >-- Found lmfit: /usr/include/include (found version "9.0.0") >-- <<< Gentoo configuration >>> >Build type RelWithDebInfo >Install path /usr >Compiler flags: >C -pipe -march=native -fno-diagnostics-color -O2 >C++ -pipe -march=native -fno-diagnostics-color -O2 >Linker flags: >Executable -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Module -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >Shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 > >-- Configuring done >-- Generating done >-- Build files have been written to: /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_double >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3 ... > * Compiling for float precision > * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3" > * Build directory (BUILD_DIR): 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/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/tng_io/src/compression/xtc3.c >[304/1119] cd /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.9 -D HAVE_FULL_FUNCTIONING_PYTHON=Python3_Interpreter_FOUND -D PROJECT_VERSION=2021.3 -D PROJECT_SOURCE_DIR=/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3 -D DIRECTORIES_TO_CHECKSUM=src:python_packaging -D VERSION_CMAKEIN=/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_float/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_float/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -D SOURCE_IS_SOURCE_DISTRIBUTION=ON -P /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake >[305/1119] /usr/bin/x86_64-gentoo-linux-musl-gcc -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -Isrc 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-I/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/thread_mpi/include -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/tng_io/include -isystem tng/include -isystem /usr/include/include -pipe -march=native -fno-diagnostics-color -O2 -fPIC -mavx2 -mfma -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -c /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/correlationgrid.cpp >[443/1119] /usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -Isrc -I/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/thread_mpi/include -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/tng_io/include -isystem tng/include -isystem /usr/include/include -pipe -march=native -fno-diagnostics-color -O2 -fPIC -mavx2 -mfma -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -c /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/correlationhistory.cpp >[444/1119] /usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -Isrc -I/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/thread_mpi/include -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/tng_io/include -isystem tng/include -isystem /usr/include/include -pipe -march=native -fno-diagnostics-color -O2 -fPIC -mavx2 -mfma -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp >FAILED: src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o >/usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -Isrc -I/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/thread_mpi/include -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/tng_io/include -isystem tng/include -isystem /usr/include/include -pipe -march=native -fno-diagnostics-color -O2 -fPIC -mavx2 -mfma -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp >In file included from /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp:47: >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.h:172:5: error: 'int64_t' does not name a type > 172 | int64_t numUpdates_; /**< The number of updates performed since the start of the simulation. */ > | ^~~~~~~ >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.h:60:1: note: 'int64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'? > 59 | #include "gromacs/math/vectypes.h" > +++ |+#include <cstdint> > 60 | >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.h: In member function 'int gmx::HistogramSize::numUpdates() const': >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.h:146:37: error: 'numUpdates_' was not declared in this scope; did you mean 'numUpdates'? > 146 | int numUpdates() const { return numUpdates_; } > | ^~~~~~~~~~~ > | numUpdates >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.h: In member function 'void gmx::HistogramSize::incrementNumUpdates()': >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.h:150:34: error: 'numUpdates_' was not declared in this scope; did you mean 'numUpdates'? > 150 | void incrementNumUpdates() { numUpdates_ += 1; } > | ^~~~~~~~~~~ > | numUpdates >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp: In constructor 'gmx::HistogramSize::HistogramSize(const gmx::AwhBiasParams&, double)': >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp:68:5: error: class 'gmx::HistogramSize' does not have any field named 'numUpdates_' > 68 | numUpdates_(0), > | ^~~~~~~~~~~ >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp: In member function 'void gmx::HistogramSize::restoreFromHistory(const gmx::AwhBiasStateHistory&)': >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp:270:5: error: 'numUpdates_' was not declared in this scope; did you mean 'numUpdates'? > 270 | numUpdates_ = stateHistory.numUpdates; > | ^~~~~~~~~~~ > | numUpdates >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp: In member function 'void gmx::HistogramSize::storeState(gmx::AwhBiasStateHistory*) const': >/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp:281:46: error: 'numUpdates_' was not declared in this scope; did you mean 'numUpdates'? > 281 | stateHistory->numUpdates = numUpdates_; > | ^~~~~~~~~~~ > | numUpdates >[445/1119] /usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -Isrc -I/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/thread_mpi/include -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/tng_io/include -isystem tng/include -isystem /usr/include/include -pipe -march=native -fno-diagnostics-color -O2 -fPIC -mavx2 -mfma -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -c /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/correlationtensor.cpp >[446/1119] /usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -Isrc -I/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/thread_mpi/include -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/tng_io/include -isystem tng/include -isystem /usr/include/include -pipe -march=native -fno-diagnostics-color -O2 -fPIC -mavx2 -mfma -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -c /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/pointstate.cpp >[447/1119] /usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -Isrc -I/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/thread_mpi/include -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/tng_io/include -isystem tng/include -isystem /usr/include/include -pipe -march=native -fno-diagnostics-color -O2 -fPIC -mavx2 -mfma -Wno-missing-field-initializers -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++17 -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/biasstate.cpp >ninja: build stopped: subcommand failed. > * ERROR: sci-chemistry/gromacs-2021.3-r1::gentoo failed (compile phase): > * ninja -v -j4 -l0 failed > * > * Call stack: > * ebuild.sh, line 127: Called src_compile > * environment, line 3768: Called cmake_src_compile > * environment, line 1466: Called cmake_build > * environment, line 1435: Called eninja > * environment, line 2376: Called die > * The specific snippet of code: > * "$@" || die "${nonfatal_args[@]}" "${*} failed" > * > * If you need support, post the output of `emerge --info '=sci-chemistry/gromacs-2021.3-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-chemistry/gromacs-2021.3-r1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-chemistry:gromacs-2021.3-r1:20211209-224150.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3_float' > * S: '/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3' >
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