The Ebuild.

repeatmasker-3.1.0.ebuild (text/plain), 1.46 KB, created by Brady Catherman on 2005-12-01 08:22:47 UTC

# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

inherit versionator

MY_PV=$(replace_all_version_separators '-')

DESCRIPTION="\
RepeatMasker is a program that screens DNA sequences for interspersed repeats
and low complexity DNA sequences. The output of the program is a detailed
annotation of the repeats that are present in the query sequence as well as a
modified version of the query sequence in which all the annotated repeats have
been masked (default: replaced by Ns). It requiers an executable called
cross_match to run. Cross_match can be found in another application called
Phrap. Both Repeatmasker and Phrap have limited availablty."
HOMEPAGE="http://repeatmasker.org/"
SRC_URI="RepeatMasker-open-${MY_PV}.tar.gz"
LICENSE="Unknown"
IUSE=""
SLOT="0"
KEYWORDS="~x86"
RESTRICT="fetch"

DEPEND=">=dev-lang/perl-5.8.0
        sci-biology/phrap"



S=${WORKDIR}/RepeatMasker

pkg_nofetch() {
	einfo "Please go to http://repeatmasker.org/RMDownloadInstructions.html"
	einfo "and fill out the registration. Download"
	einfo "RepeatMasker-open-${MY_PV}.tar.gz and"
	einfo "place it in the /usr/portage/distfiles directory."
}

src_compile() {
	cat << EOF > configure.commands

/usr/bin
/opt/${P}
1
/usr/bin
Y
4
EOF
	
	einfo "Configuring repeatmasker. This shouldn't take more than a second."
	perl ./configure < configure.commands > /dev/null || die
}

src_install() {
	dodir /opt/${P} || die
	cp -rf ${S}/* ${D}/opt/${P} || die
}