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Gentoo's Bugzilla – Attachment 73873 Details for
Bug 114095
An ebuild for the science program: Seq-Gen
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The ebuild.
seq-gen-1.3.2.ebuild (text/plain), 1.38 KB, created by
Brady Catherman
on 2005-11-30 19:03:39 UTC
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Description:
The ebuild.
Filename:
MIME Type:
Creator:
Brady Catherman
Created:
2005-11-30 19:03:39 UTC
Size:
1.38 KB
patch
obsolete
># Copyright 1999-2005 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 > >DESCRIPTION="\ >Seq-Gen is a program that will simulate the evolution of nucleotide or amino >acid sequences along a phylogeny, using common models of the substitution >process. A range of models of molecular evolution are implemented including the >general reversible model. State frequencies and other parameters of the model >may be given and site-specific rate heterogeneity may also be incorporated in a >number of ways. Any number of trees may be read in and the program will produce >any number of data sets for each tree. Thus large sets of replicate simulations >can be easily created. It has been designed to be a general purpose simulator >that incorporates most of the commonly used (and computationally tractable) >models of molecular sequence evolution." >HOMEPAGE="http://evolve.zoo.ox.ac.uk/software.html?id=seqgen" >SRC_URI="seq-gen-v${PV}.tgz" >LICENSE="Unknown" >IUSE="" >SLOT="0" >KEYWORDS="~x86" >RESTRICT="fetch" > >DEPEND="" > >S=${WORKDIR}/Seq-Gen.v${PV} > >pkg_nofetch() >{ > einfo "Please go to http://evolve.zoo.ox.ac.uk/download.php?id=41&num=1" > einfo "and download the${PV} release of Seq-Gen. Once you have downloaded" > einfo "this file place it in /usr/portage/distfiles" >} > > >src_compile() { > cd "${S}/source" || die > emake || die >} > >src_install() { > cd "${S}/source" || die > dobin seq-gen >} >
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bug 114095
: 73873