# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

DESCRIPTION="\
Seq-Gen is a program that will simulate the evolution of nucleotide or amino
acid sequences along a phylogeny, using common models of the substitution
process. A range of models of molecular evolution are implemented including the
general reversible model. State frequencies and other parameters of the model
may be given and site-specific rate heterogeneity may also be incorporated in a
number of ways. Any number of trees may be read in and the program will produce
any number of data sets for each tree. Thus large sets of replicate simulations
can be easily created. It has been designed to be a general purpose simulator
that incorporates most of the commonly used (and computationally tractable)
models of molecular sequence evolution."
HOMEPAGE="http://evolve.zoo.ox.ac.uk/software.html?id=seqgen"
SRC_URI="seq-gen-v${PV}.tgz"
LICENSE="Unknown"
IUSE=""
SLOT="0"
KEYWORDS="~x86"
RESTRICT="fetch"

DEPEND=""

S=${WORKDIR}/Seq-Gen.v${PV}

pkg_nofetch()
{
	einfo "Please go to http://evolve.zoo.ox.ac.uk/download.php?id=41&num=1"
	einfo "and download the${PV} release of Seq-Gen. Once you have downloaded"
	einfo "this file place it in /usr/portage/distfiles"
}


src_compile() {
	cd "${S}/source" || die
	emake || die
}

src_install() {
	cd "${S}/source" || die
	dobin seq-gen
}