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Gentoo's Bugzilla – Attachment 684597 Details for
Bug 767064
sci-misc/h5utils-1.13.1 : make[1]: *** No rule to make target h5fromh4.1, needed by all-am. Stop.
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sci-misc:h5utils-1.13.1:20210125-052243.log
sci-misc:h5utils-1.13.1:20210125-052243.log (text/plain), 8.91 KB, created by
Toralf Förster
on 2021-01-25 08:20:57 UTC
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Description:
sci-misc:h5utils-1.13.1:20210125-052243.log
Filename:
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Creator:
Toralf Förster
Created:
2021-01-25 08:20:57 UTC
Size:
8.91 KB
patch
obsolete
> * Package: sci-misc/h5utils-1.13.1 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc hdf kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking h5utils-1.13.1.tar.gz to /var/tmp/portage/sci-misc/h5utils-1.13.1/work >>>> Source unpacked in /var/tmp/portage/sci-misc/h5utils-1.13.1/work >>>> Preparing source in /var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1 ... > * Applying h5utils-1.13.1-automagic.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1' ... > * Running aclocal ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign --force-missing ... > [ ok ] > * Running elibtoolize in: h5utils-1.13.1/ >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1 ... > * econf: updating h5utils-1.13.1/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating h5utils-1.13.1/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/h5utils-1.13.1 --htmldir=/usr/share/doc/h5utils-1.13.1/html --libdir=/usr/lib64 --without-v5d --without-octave --with-hdf >checking for a BSD-compatible install... /usr/lib/portage/python3.8/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether make supports nested variables... (cached) yes >checking whether to enable maintainer-specific portions of Makefiles... no >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking whether make supports the include directive... yes (GNU style) >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sin in -lm... yes >checking for snprintf... yes >checking for inflate in -lz... yes >checking for png_create_write_struct in -lpng... yes >checking for evaluator_get_variables in -lmatheval... no >configure: WARNING: can't find libmatheval: won't be able to compile h5math >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking hdf.h usability... yes >checking hdf.h presence... yes >checking for hdf.h... yes >checking hdf/hdf.h usability... no >checking hdf/hdf.h presence... no >checking for hdf/hdf.h... no >checking for jpeg_start_compress in -ljpeg... yes >checking for DFSDgetdata in -ldf... yes >checking for H5Fopen in -lhdf5... yes >checking arpa/inet.h usability... yes >checking arpa/inet.h presence... yes >checking for arpa/inet.h... yes >checking netinet/in.h usability... yes >checking netinet/in.h presence... yes >checking for netinet/in.h... yes >checking for stdint.h... (cached) yes >checking for inttypes.h... (cached) yes >checking for uint16_t... yes >checking for uint32_t... yes >checking for htons... yes >checking size of float... 4 >checking for htonl... yes >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating doc/man/h5topng.1 >config.status: creating config.h >config.status: executing depfiles commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1 ... >make -j1 >make all-am >make[1]: Entering directory '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1' >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o h5totxt.o h5totxt.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o arrayh5.o arrayh5.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o h5utils.o h5utils.c >In file included from /usr/include/string.h:519, > from h5utils.c:25: >In function âstrncpyâ, > inlined from âsplit_fnameâ at h5utils.c:75:11: >/usr/include/bits/string_fortified.h:91:10: warning: â__builtin_strncpyâ specified bound depends on the length of the source argument [-Wstringop-overflow=] > 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >h5utils.c: In function âsplit_fnameâ: >h5utils.c:69:18: note: length computed here > 69 | fname_len = strlen(fname); > | ^~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5totxt h5totxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o h5fromtxt.o h5fromtxt.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5fromtxt h5fromtxt.o arrayh5.o h5utils.o -lhdf5 -lz -lm >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o h5tovtk.o h5tovtk.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5tovtk h5tovtk.o arrayh5.o h5utils.o -lhdf5 -lz -lm >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o h4fromh5.o h4fromh5.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o arrayh4.o arrayh4.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h4fromh5 h4fromh5.o arrayh4.o arrayh5.o h5utils.o -ldf -ljpeg -lhdf5 -lz -lm >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o h5fromh4.o h5fromh4.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5fromh4 h5fromh4.o arrayh4.o arrayh5.o h5utils.o -ldf -ljpeg -lhdf5 -lz -lm >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o h5topng.o h5topng.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o writepng.o writepng.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5topng h5topng.o writepng.o arrayh5.o h5utils.o -lpng -lhdf5 -lz -lm >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=native -fno-diagnostics-color -c -o h5cyl2cart.o h5cyl2cart.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5cyl2cart h5cyl2cart.o arrayh5.o h5utils.o -lhdf5 -lz -lm >make[1]: *** No rule to make target 'h5fromh4.1', needed by 'all-am'. Stop. >make[1]: Leaving directory '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1' >make: *** [Makefile:407: all] Error 2 > * ERROR: sci-misc/h5utils-1.13.1::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-misc/h5utils-1.13.1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-misc/h5utils-1.13.1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-misc:h5utils-1.13.1:20210125-052243.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-misc/h5utils-1.13.1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-misc/h5utils-1.13.1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1' > * S: '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1'
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