Bug 767064 – sci-misc/h5utils-1.13.1 : make[1]: *** No rule to make target h5fromh4.1, needed by all-am. Stop.

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Toralf Förster 2021-01-25 08:20:50 UTC]

x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I.     -O2 -pipe -march=native -fno-diagnostics-color  -c -o h5cyl2cart.o h5cyl2cart.c
x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -fno-diagnostics-color   -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o h5cyl2cart h5cyl2cart.o arrayh5.o h5utils.o  -lhdf5 -lz -lm 
make[1]: *** No rule to make target 'h5fromh4.1', needed by 'all-am'.  Stop.
make[1]: Leaving directory '/var/tmp/portage/sci-misc/h5utils-1.13.1/work/h5utils-1.13.1'
make: *** [Makefile:407: all] Error 2
 * ERROR: sci-misc/h5utils-1.13.1::gentoo failed (compile phase):

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_hardened-20210123-232300

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10.2.0 *
/usr/lib/llvm/10
10.0.1
Python 3.8.7
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby27 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.48.0 *
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.272_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.8.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Mon Jan 25 04:32:58 UTC 2021

emerge -qpvO sci-misc/h5utils
[ebuild  N    ] sci-misc/h5utils-1.13.1  USE="hdf -octave"

[Comment 1 Toralf Förster 2021-01-25 08:20:51 UTC]

Created attachment 684582 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2021-01-25 08:20:53 UTC]

Created attachment 684585 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2021-01-25 08:20:54 UTC]

Created attachment 684588 [details]
environment

[Comment 4 Toralf Förster 2021-01-25 08:20:55 UTC]

Created attachment 684591 [details]
etc.portage.tar.bz2

[Comment 5 Toralf Förster 2021-01-25 08:20:56 UTC]

Created attachment 684594 [details]
logs.tar.bz2

[Comment 6 Toralf Förster 2021-01-25 08:20:57 UTC]

Created attachment 684597 [details]
sci-misc:h5utils-1.13.1:20210125-052243.log

[Comment 7 Toralf Förster 2021-01-25 08:20:58 UTC]

Created attachment 684600 [details]
temp.tar.bz2

[Comment 8 Attila Tóth 2021-01-26 21:10:03 UTC]

Created attachment 684828 [details, diff]
h5utils-1.13.1-automagic-patch-unscrew.patch

Proposed patch as a workaround.

[Comment 9 Jakov Smolić 2021-01-26 21:16:13 UTC]

(In reply to Attila Tóth from comment #8)
> Created attachment 684828 [details, diff] [details, diff]
> h5utils-1.13.1-automagic-patch-unscrew.patch
> 
> Proposed patch as a workaround.

Thanks! Mind submitting it as a PR?

[Comment 10 Larry the Git Cow 2021-03-07 13:57:52 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aebc40c5fc6fb148368a4cfeb825da2440f7f69a

commit aebc40c5fc6fb148368a4cfeb825da2440f7f69a
Author:     David Seifert <[e-mail]>
AuthorDate: 2021-03-07 13:57:39 +0000
Commit:     David Seifert <[e-mail]>
CommitDate: 2021-03-07 13:57:39 +0000

    sci-misc/h5utils: Fix automagic patch
    
    Closes: https://bugs.gentoo.org/767064
    Package-Manager: Portage-3.0.16, Repoman-3.0.2
    Suggested-by: Attila Tóth <[e-mail]>
    Signed-off-by: David Seifert <[e-mail]>

 .../h5utils/files/h5utils-1.13.1-automagic.patch   | 37 +++++++++++-----------
 1 file changed, 19 insertions(+), 18 deletions(-)