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Gentoo's Bugzilla – Attachment 659488 Details for
Bug 741604
sci-libs/spqr-2.0.9 fails tests
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build.log
build.log (text/plain), 42.75 KB, created by
Agostino Sarubbo
on 2020-09-11 06:54:16 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2020-09-11 06:54:16 UTC
Size:
42.75 KB
patch
obsolete
> * Package: sci-libs/spqr-2.0.9 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/cf566d5d191aa407f79ba1fc1c38586e8ad0214a (Thu Sep 10 16:35:47 UTC 2020) >@@@@@ END @@@@@ > > > >emerge --info: >Portage 3.0.6 (python 3.8.5-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r1, 5.4.0-1021-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1021-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8175M_CPU_@_2.50GHz-with-glibc2.2.5 >KiB Mem: 64359960 total, 27950700 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Thu, 10 Sep 2020 16:35:46 +0000 >sh bash 5.0_p18 >ld GNU ld (Gentoo 2.34 p6) 2.34.0 >app-shells/bash: 5.0_p18::gentoo >dev-lang/perl: 5.30.3-r1::gentoo >dev-lang/python: 2.7.18-r2::gentoo, 3.6.12::gentoo, 3.7.9::gentoo, 3.8.5::gentoo, 3.9.0_rc1::gentoo >dev-util/cmake: 3.18.2::gentoo >sys-apps/baselayout: 2.7::gentoo >sys-apps/openrc: 0.42.1::gentoo >sys-apps/sandbox: 2.20::gentoo >sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo >sys-devel/automake: 1.16.2::gentoo >sys-devel/binutils: 2.34-r2::gentoo >sys-devel/gcc: 10.2.0-r1::gentoo >sys-devel/gcc-config: 2.3.2::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.8::gentoo (virtual/os-headers) >sys-libs/glibc: 2.32-r1::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-jobs: 1 > sync-rsync-extra-opts: > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-max-age: 24 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* GPL-2+" >CBUILD="x86_64-pc-linux-gnu" >CC="x86_64-pc-linux-gnu-clang" >CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXX="x86_64-pc-linux-gnu-clang++" >CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >DISTDIR="/var/tmp/portage/sci-libs/spqr-2.0.9/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -b -k" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF-8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld" >MAKEOPTS="-j16 V=1" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd test unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU" >Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS > > > >>>> Unpacking source... >>>> Unpacking spqr-2.0.9.tar.bz2 to /var/tmp/portage/sci-libs/spqr-2.0.9/work >>>> Source unpacked in /var/tmp/portage/sci-libs/spqr-2.0.9/work >>>> Preparing source in /var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9 ... > * econf: updating spqr-2.0.9/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating spqr-2.0.9/config/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/spqr-2.0.9 --htmldir=/usr/share/doc/spqr-2.0.9/html --with-sysroot=/ --libdir=/usr/lib64 --disable-static --without-doc --without-partition --without-tbb >checking for a BSD-compatible install... /usr/lib/portage/python3.8/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether make supports nested variables... (cached) yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking whether make supports the include directive... yes (GNU style) >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-clang >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-clang accepts -g... yes >checking for x86_64-pc-linux-gnu-clang option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-clang understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-clang... none >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-clang... ld.lld >checking if the linker (ld.lld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... llvm-nm >checking the name lister (llvm-nm) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for ld.lld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... llvm-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... llvm-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... llvm-strip >checking for x86_64-pc-linux-gnu-ranlib... llvm-ranlib >checking command to parse llvm-nm output from x86_64-pc-linux-gnu-clang object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-clang -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-clang supports -fno-rtti -fno-exceptions... yes >checking for x86_64-pc-linux-gnu-clang option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-clang PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-clang static flag -static works... yes >checking if x86_64-pc-linux-gnu-clang supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-clang supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-clang linker (ld.lld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-clang++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-clang++... none >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-clang++ -E >checking for ld used by x86_64-pc-linux-gnu-clang++... ld.lld -m elf_x86_64 >checking if the linker (ld.lld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-clang++ linker (ld.lld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-clang++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-clang++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-clang++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-clang++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-clang++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-clang++ linker (ld.lld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking float.h usability... yes >checking float.h presence... yes >checking for float.h... yes >checking for string.h... (cached) yes >checking for stdlib.h... (cached) yes >checking for size_t... yes >checking for stdbool.h that conforms to C99... no >checking for _Bool... no >checking for inline... inline >checking for size_t... (cached) yes >checking for error_at_line... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible realloc... yes >checking for sqrt in -lm... yes >checking whether to build user guide... no >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking for suitesparseconfig... yes >checking SuiteSparse_config.h usability... yes >checking SuiteSparse_config.h presence... yes >checking for SuiteSparse_config.h... yes >checking for SuiteSparse_malloc in -lsuitesparseconfig... yes >checking for x86_64-pc-linux-gnu-g77... no >checking for x86_64-pc-linux-gnu-xlf... no >checking for x86_64-pc-linux-gnu-f77... no >checking for x86_64-pc-linux-gnu-frt... no >checking for x86_64-pc-linux-gnu-pgf77... no >checking for x86_64-pc-linux-gnu-cf77... no >checking for x86_64-pc-linux-gnu-fort77... no >checking for x86_64-pc-linux-gnu-fl32... no >checking for x86_64-pc-linux-gnu-af77... no >checking for x86_64-pc-linux-gnu-xlf90... no >checking for x86_64-pc-linux-gnu-f90... no >checking for x86_64-pc-linux-gnu-pgf90... no >checking for x86_64-pc-linux-gnu-pghpf... no >checking for x86_64-pc-linux-gnu-epcf90... no >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (ld.lld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v >checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../.. -lgfortran -lm -lquadmath >checking for dummy main to link with Fortran 77 libraries... none >checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore >checking for blas... yes >checking for lapack... yes >checking for cholmod... yes >checking cholmod_blas.h usability... yes >checking cholmod_blas.h presence... yes >checking for cholmod_blas.h... yes >checking for cholmod_l_free in -lcholmod... yes >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Demo/Makefile >config.status: creating Doc/Makefile >config.status: creating Source/Makefile >config.status: creating spqr.pc >config.status: creating Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9 ... >make -j16 V=1 >make all-recursive >make[1]: Entering directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9' >Making all in Source >make[2]: Entering directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Source' >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_rmap.lo spqr_rmap.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o SuiteSparseQR_C.lo SuiteSparseQR_C.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o SuiteSparseQR_expert.lo SuiteSparseQR_expert.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_parallel.lo spqr_parallel.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_kernel.lo spqr_kernel.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_analyze.lo spqr_analyze.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_assemble.lo spqr_assemble.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_cpack.lo spqr_cpack.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_csize.lo spqr_csize.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_fcsize.lo spqr_fcsize.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_debug.lo spqr_debug.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_front.lo spqr_front.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_factorize.lo spqr_factorize.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_freenum.lo spqr_freenum.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_freesym.lo spqr_freesym.cpp >/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o spqr_freefac.lo spqr_freefac.cpp >libtool: compile: x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c SuiteSparseQR_C.cpp -fPIC -DPIC -o .libs/SuiteSparseQR_C.o >libtool: compile: x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c SuiteSparseQR_expert.cpp -fPIC -DPIC -o .libs/SuiteSparseQR_expert.o >libtool: compile: x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c spqr_parallel.cpp -fPIC -DPIC -o .libs/spqr_parallel.o >libtool: compile: x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c spqr_rmap.cpp -fPIC -DPIC -o .libs/spqr_rmap.o >libtool: compile: x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c spqr_fcsize.cpp -fPIC -DPIC -o .libs/spqr_fcsize.o >libtool: compile: x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c spqr_analyze.cpp -fPIC -DPIC -o .libs/spqr_analyze.o >libtool: compile: x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c spqr_cpack.cpp -fPIC -DPIC -o .libs/spqr_cpack.o >libtool: compile: x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c spqr_freesym.cpp -fPIC -DPIC -o .libs/spqr_freesym.o >libtool: compile: x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -DNPARTITION=1 -I/usr/include/metis -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c spqr_kernel.cpp 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-fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -o libspqr.la -rpath /usr/lib64 spqr_rmap.lo SuiteSparseQR_C.lo SuiteSparseQR_expert.lo spqr_parallel.lo spqr_kernel.lo spqr_analyze.lo spqr_assemble.lo spqr_cpack.lo spqr_csize.lo spqr_fcsize.lo spqr_debug.lo spqr_front.lo spqr_factorize.lo spqr_freenum.lo spqr_freesym.lo spqr_freefac.lo spqr_fsize.lo spqr_maxcolnorm.lo spqr_rconvert.lo spqr_rcount.lo spqr_rhpack.lo spqr_rsolve.lo spqr_stranspose1.lo spqr_stranspose2.lo spqr_hpinv.lo spqr_1fixed.lo spqr_1colamd.lo SuiteSparseQR.lo spqr_1factor.lo spqr_cumsum.lo spqr_shift.lo spqr_happly.lo spqr_panel.lo spqr_happly_work.lo SuiteSparseQR_qmult.lo spqr_trapezoidal.lo spqr_larftb.lo spqr_append.lo spqr_type.lo spqr_tol.lo -llapack -lcholmod -lsuitesparseconfig -lm >libtool: link: x86_64-pc-linux-gnu-clang++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/crtbeginS.o .libs/spqr_rmap.o .libs/SuiteSparseQR_C.o .libs/SuiteSparseQR_expert.o .libs/spqr_parallel.o .libs/spqr_kernel.o .libs/spqr_analyze.o .libs/spqr_assemble.o .libs/spqr_cpack.o .libs/spqr_csize.o .libs/spqr_fcsize.o .libs/spqr_debug.o .libs/spqr_front.o .libs/spqr_factorize.o .libs/spqr_freenum.o .libs/spqr_freesym.o .libs/spqr_freefac.o .libs/spqr_fsize.o .libs/spqr_maxcolnorm.o .libs/spqr_rconvert.o .libs/spqr_rcount.o .libs/spqr_rhpack.o .libs/spqr_rsolve.o .libs/spqr_stranspose1.o .libs/spqr_stranspose2.o .libs/spqr_hpinv.o .libs/spqr_1fixed.o .libs/spqr_1colamd.o .libs/SuiteSparseQR.o .libs/spqr_1factor.o .libs/spqr_cumsum.o .libs/spqr_shift.o .libs/spqr_happly.o .libs/spqr_panel.o .libs/spqr_happly_work.o .libs/SuiteSparseQR_qmult.o .libs/spqr_trapezoidal.o .libs/spqr_larftb.o .libs/spqr_append.o .libs/spqr_type.o .libs/spqr_tol.o -llapack -lcholmod -lsuitesparseconfig -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64 -L/usr/lib/llvm/10/bin/../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../.. -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../lib64/crtn.o -O2 -march=native -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -Wl,-soname -Wl,libspqr.so.0 -o .libs/libspqr.so.0.0.0 >libtool: link: (cd ".libs" && rm -f "libspqr.so.0" && ln -s "libspqr.so.0.0.0" "libspqr.so.0") >libtool: link: (cd ".libs" && rm -f "libspqr.so" && ln -s "libspqr.so.0.0.0" "libspqr.so") >libtool: link: ( cd ".libs" && rm -f "libspqr.la" && ln -s "../libspqr.la" "libspqr.la" ) >make[2]: Leaving directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Source' >Making all in Demo >make[2]: Entering directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Demo' >make[2]: Nothing to be done for 'all'. >make[2]: Leaving directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Demo' >Making all in Doc >make[2]: Entering directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Doc' >make[2]: Nothing to be done for 'all'. >make[2]: Leaving directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Doc' >make[2]: Entering directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9' >make[2]: Leaving directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9' >make[1]: Leaving directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9' >>>> Source compiled. >>>> Test phase: sci-libs/spqr-2.0.9 >make -j16 V=1 check >Making check in Source >make[1]: Entering directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Source' >make[1]: Nothing to be done for 'check'. >make[1]: Leaving directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Source' >Making check in Demo >make[1]: Entering directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Demo' >make qrsimple qrsimplec qrdemo qrdemoc >make[2]: Entering directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Demo' >x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o qrsimple.o qrsimple.cpp >x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I.. -I../Include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o qrsimplec.o qrsimplec.c >x86_64-pc-linux-gnu-clang++ -DHAVE_CONFIG_H -I. -I.. -I../Include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o qrdemo.o qrdemo.cpp >x86_64-pc-linux-gnu-clang -DHAVE_CONFIG_H -I. -I.. -I../Include -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -c -o qrdemoc.o qrdemoc.c >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-clang -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -o qrsimplec qrsimplec.o ../Source/libspqr.la -lsuitesparseconfig -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-clang -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -o qrdemoc qrdemoc.o ../Source/libspqr.la -lsuitesparseconfig -lm >/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-clang++ -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -o qrsimple qrsimple.o ../Source/libspqr.la -lsuitesparseconfig -lm >libtool: link: x86_64-pc-linux-gnu-clang -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -o .libs/qrsimplec qrsimplec.o ../Source/.libs/libspqr.so -llapack -lcholmod -lsuitesparseconfig -lm >libtool: link: x86_64-pc-linux-gnu-clang -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -o .libs/qrdemoc qrdemoc.o ../Source/.libs/libspqr.so -llapack -lcholmod -lsuitesparseconfig -lm >libtool: link: x86_64-pc-linux-gnu-clang++ -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -o .libs/qrsimple qrsimple.o ../Source/.libs/libspqr.so -llapack -lcholmod -lsuitesparseconfig -lm >ld.lld: [0;31merror: [0m../Source/.libs/libspqr.so: undefined reference to dnrm2_ >ld.lld: [0;31merror: [0m../Source/.libs/libspqr.so: undefined reference to dznrm2_ >clang-10: error: linker command failed with exit code 1 (use -v to see invocation) >make[2]: *** [Makefile:416: qrsimple] Error 1 >make[2]: *** Waiting for unfinished jobs.... >make[2]: Leaving directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Demo' >make[1]: *** [Makefile:573: check-am] Error 2 >make[1]: Leaving directory '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9/Demo' >make: *** [Makefile:536: check-recursive] Error 1 > * ERROR: sci-libs/spqr-2.0.9::gentoo failed (test phase): > * Make check failed. See above for details. > * > * Call stack: > * ebuild.sh, line 125: Called src_test > * environment, line 562: Called default > * phase-functions.sh, line 855: Called default_src_test > * phase-functions.sh, line 884: Called __eapi0_src_test > * phase-helpers.sh, line 779: Called die > * The specific snippet of code: > * $emake_cmd ${internal_opts} check || \ > * die "Make check failed. See above for details." > * > * If you need support, post the output of `emerge --info '=sci-libs/spqr-2.0.9::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-libs/spqr-2.0.9::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-libs/spqr-2.0.9:20200910-170735.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/spqr-2.0.9/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-libs/spqr-2.0.9/temp/environment'. > * Working directory: '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9' > * S: '/var/tmp/portage/sci-libs/spqr-2.0.9/work/spqr-2.0.9'
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bug 741604
: 659488