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Gentoo's Bugzilla – Attachment 644428 Details for
Bug 727982
sci-biology/phylip installs shared libraries that lack a SONAME
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build.log
build.log (text/plain), 33.76 KB, created by
Agostino Sarubbo
on 2020-06-11 16:19:47 UTC
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hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2020-06-11 16:19:47 UTC
Size:
33.76 KB
patch
obsolete
> * Package: sci-biology/phylip-3.696-r2 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/b82b65588c884bdad6c46ce75183c948aa2439bc >@@@@@ END @@@@@ > >>>> Unpacking source... >>>> Unpacking phylip-3.696.tar.gz to /var/tmp/portage/sci-biology/phylip-3.696-r2/work >>>> Source unpacked in /var/tmp/portage/sci-biology/phylip-3.696-r2/work >>>> Preparing source in /var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src ... >make -j4 -j1 CC=x86_64-pc-linux-gnu-gcc DC=x86_64-pc-linux-gnu-gcc 'CFLAGS=-O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result' all put >Building PHYLIP version 3.696 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o clique.o clique.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o disc.o disc.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o phylip.o phylip.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result clique.o disc.o phylip.o -lm -o clique >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o consense.o consense.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o cons.o cons.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result consense.o phylip.o cons.o -lm -o consense >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o contml.o contml.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o cont.o cont.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result contml.o cont.o phylip.o -lm -o contml >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o contrast.o contrast.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result contrast.o cont.o phylip.o -lm -o contrast >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnacomp.o dnacomp.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o seq.o seq.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnacomp.o seq.o phylip.o -lm -o dnacomp >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnadist.o dnadist.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnadist.o seq.o phylip.o -lm -o dnadist >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnainvar.o dnainvar.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnainvar.o seq.o phylip.o -lm -o dnainvar >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnaml.o dnaml.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnaml.o seq.o phylip.o -lm -o dnaml >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnamlk.o dnamlk.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o mlclock.o mlclock.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o printree.o printree.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnamlk.o seq.o phylip.o mlclock.o printree.o -lm -o dnamlk >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnamove.o dnamove.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o moves.o moves.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnamove.o seq.o moves.o phylip.o -lm -o dnamove >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnapars.o dnapars.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnapars.o seq.o phylip.o -lm -o dnapars >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnapenny.o dnapenny.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnapenny.o seq.o phylip.o -lm -o dnapenny >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dolmove.o dolmove.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dollo.o dollo.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dolmove.o disc.o moves.o dollo.o phylip.o -lm -o dolmove >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dollop.o dollop.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dollop.o disc.o dollo.o phylip.o -lm -o dollop >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dolpenny.o dolpenny.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dolpenny.o disc.o dollo.o phylip.o -lm -o dolpenny >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o factor.o factor.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result factor.o phylip.o -lm -o factor >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o fitch.o fitch.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dist.o dist.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result fitch.o dist.o phylip.o -lm -o fitch >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o gendist.o gendist.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result gendist.o phylip.o -lm -o gendist >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o kitsch.o kitsch.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result kitsch.o dist.o phylip.o -lm -o kitsch >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o mix.o mix.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o wagner.o wagner.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result mix.o disc.o wagner.o phylip.o -lm -o mix >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o move.o move.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result move.o disc.o moves.o wagner.o phylip.o -lm -o move >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o neighbor.o neighbor.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result neighbor.o dist.o phylip.o -lm -o neighbor >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o pars.o pars.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o discrete.o discrete.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result pars.o discrete.o phylip.o -lm -o pars >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o penny.o penny.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result penny.o disc.o wagner.o phylip.o -lm -o penny >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o proml.o proml.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result proml.o seq.o phylip.o -lm -o proml >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o promlk.o promlk.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result promlk.o seq.o phylip.o mlclock.o printree.o -lm -o promlk >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o protdist.o protdist.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result protdist.o seq.o phylip.o -lm -o protdist >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o protpars.o protpars.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result protpars.o seq.o phylip.o -lm -o protpars >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o restdist.o restdist.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result restdist.o seq.o phylip.o -lm -o restdist >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o restml.o restml.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result restml.o seq.o phylip.o -lm -o restml >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o retree.o retree.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result retree.o moves.o phylip.o -lm -o retree >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o seqboot.o seqboot.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result seqboot.o seq.o phylip.o -lm -o seqboot >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o treedist.o treedist.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result treedist.o cons.o phylip.o -lm -o treedist >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c drawgram.c >drawgram.c: In function âdrawgramâ: >drawgram.c:2111:9: warning: implicit declaration of function âmakeboxâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;] > 2111 | makebox(fontname,&xoffset,&yoffset,&scale,spp); > | ^~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c draw.c >draw.c: In function âmetricforfontâ: >draw.c:2603:53: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2603 | fontmetric[i-31] = timesroman_metric[i-31], > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2602:15: note: within this loop > 2602 | for (i=31;i<256;++i) > | ^~~ >draw.c:2591:49: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2591 | fontmetric[i-31] = timesroman_metric[i-31], > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2590:11: note: within this loop > 2590 | for (i=31;i<256;++i) > | ^~~ >draw.c:2551:48: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2551 | fontmetric[i-31] = timesbolditalic_metric[i-31]; > | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2550:5: note: within this loop > 2550 | for (i=31;i<256;++i) > | ^~~ >draw.c:2548:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2548 | fontmetric[i-31] = timesbold_metric[i-31]; > | ~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2547:5: note: within this loop > 2547 | for (i=31;i<256;++i) > | ^~~ >draw.c:2545:44: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2545 | fontmetric[i-31] = timesitalic_metric[i-31]; > | ~~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2544:5: note: within this loop > 2544 | for (i=31;i<256;++i) > | ^~~ >draw.c:2542:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2542 | fontmetric[i-31] = timesroman_metric[i-31]; > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2541:5: note: within this loop > 2541 | for (i=31;i<256;++i) > | ^~~ >draw.c:2539:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2539 | fontmetric[i-31] = timesroman_metric[i-31]; > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2538:5: note: within this loop > 2538 | for (i=31;i<256;++i) > | ^~~ >draw.c:2536:46: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2536 | fontmetric[i-31] = helveticabold_metric[i-31]; > | ~~~~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2535:5: note: within this loop > 2535 | for (i=31;i<256;++i) > | ^~~ >draw.c:2532:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2532 | fontmetric[i-31] = helvetica_metric[i-31]; > | ~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2531:5: note: within this loop > 2531 | for (i=31;i<256;++i) > | ^~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c draw2.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result draw.o draw2.o drawgram.o phylip.o -lm -o drawgram >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -shared -fPIC -c drawtree.c >drawtree.c: In function âdrawtreeâ: >drawtree.c:3017:9: warning: implicit declaration of function âmakeboxâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;] > 3017 | makebox(fontname,&xoffset,&yoffset,&scale,spp); > | ^~~~~~~ >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result draw.o draw2.o drawtree.o phylip.o -lm -o drawtree >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -o libdrawgram.so -shared -fPIC drawgram.c draw.c draw2.c phylip.c >drawgram.c: In function âdrawgramâ: >drawgram.c:2111:9: warning: implicit declaration of function âmakeboxâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;] > 2111 | makebox(fontname,&xoffset,&yoffset,&scale,spp); > | ^~~~~~~ >draw.c: In function âmetricforfontâ: >draw.c:2603:53: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2603 | fontmetric[i-31] = timesroman_metric[i-31], > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2602:15: note: within this loop > 2602 | for (i=31;i<256;++i) > | ^~~ >draw.c:2591:49: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2591 | fontmetric[i-31] = timesroman_metric[i-31], > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2590:11: note: within this loop > 2590 | for (i=31;i<256;++i) > | ^~~ >draw.c:2551:48: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2551 | fontmetric[i-31] = timesbolditalic_metric[i-31]; > | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2550:5: note: within this loop > 2550 | for (i=31;i<256;++i) > | ^~~ >draw.c:2548:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2548 | fontmetric[i-31] = timesbold_metric[i-31]; > | ~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2547:5: note: within this loop > 2547 | for (i=31;i<256;++i) > | ^~~ >draw.c:2545:44: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2545 | fontmetric[i-31] = timesitalic_metric[i-31]; > | ~~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2544:5: note: within this loop > 2544 | for (i=31;i<256;++i) > | ^~~ >draw.c:2542:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2542 | fontmetric[i-31] = timesroman_metric[i-31]; > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2541:5: note: within this loop > 2541 | for (i=31;i<256;++i) > | ^~~ >draw.c:2539:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2539 | fontmetric[i-31] = timesroman_metric[i-31]; > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2538:5: note: within this loop > 2538 | for (i=31;i<256;++i) > | ^~~ >draw.c:2536:46: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2536 | fontmetric[i-31] = helveticabold_metric[i-31]; > | ~~~~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2535:5: note: within this loop > 2535 | for (i=31;i<256;++i) > | ^~~ >draw.c:2532:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2532 | fontmetric[i-31] = helvetica_metric[i-31]; > | ~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2531:5: note: within this loop > 2531 | for (i=31;i<256;++i) > | ^~~ >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -o libdrawtree.so -shared -fPIC drawtree.c draw.c draw2.c phylip.c >drawtree.c: In function âdrawtreeâ: >drawtree.c:3017:9: warning: implicit declaration of function âmakeboxâ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;] > 3017 | makebox(fontname,&xoffset,&yoffset,&scale,spp); > | ^~~~~~~ >draw.c: In function âmetricforfontâ: >draw.c:2603:53: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2603 | fontmetric[i-31] = timesroman_metric[i-31], > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2602:15: note: within this loop > 2602 | for (i=31;i<256;++i) > | ^~~ >draw.c:2591:49: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2591 | fontmetric[i-31] = timesroman_metric[i-31], > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2590:11: note: within this loop > 2590 | for (i=31;i<256;++i) > | ^~~ >draw.c:2551:48: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2551 | fontmetric[i-31] = timesbolditalic_metric[i-31]; > | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2550:5: note: within this loop > 2550 | for (i=31;i<256;++i) > | ^~~ >draw.c:2548:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2548 | fontmetric[i-31] = timesbold_metric[i-31]; > | ~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2547:5: note: within this loop > 2547 | for (i=31;i<256;++i) > | ^~~ >draw.c:2545:44: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2545 | fontmetric[i-31] = timesitalic_metric[i-31]; > | ~~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2544:5: note: within this loop > 2544 | for (i=31;i<256;++i) > | ^~~ >draw.c:2542:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2542 | fontmetric[i-31] = timesroman_metric[i-31]; > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2541:5: note: within this loop > 2541 | for (i=31;i<256;++i) > | ^~~ >draw.c:2539:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2539 | fontmetric[i-31] = timesroman_metric[i-31]; > | ~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2538:5: note: within this loop > 2538 | for (i=31;i<256;++i) > | ^~~ >draw.c:2536:46: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2536 | fontmetric[i-31] = helveticabold_metric[i-31]; > | ~~~~~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2535:5: note: within this loop > 2535 | for (i=31;i<256;++i) > | ^~~ >draw.c:2532:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] > 2532 | fontmetric[i-31] = helvetica_metric[i-31]; > | ~~~~~~~~~~~~~~~~^~~~~~ >draw.c:2531:5: note: within this loop > 2531 | for (i=31;i<256;++i) > | ^~~ >Finished compiling. > >Installing PHYLIP v3.6 binaries in ../exe >Installing dynamic libraries in ../exe >Installing jar files in ../exe >Installing font files in ../exe >Finished installation. > >>>> Source compiled. >>>> Test phase [not enabled]: sci-biology/phylip-3.696-r2 > >>>> Install sci-biology/phylip-3.696-r2 into /var/tmp/portage/sci-biology/phylip-3.696-r2/image/ >>>> Completed installing sci-biology/phylip-3.696-r2 into /var/tmp/portage/sci-biology/phylip-3.696-r2/image/ > > * Final size of build directory: 24712 KiB (24.1 MiB) > * Final size of installed tree: 9440 KiB ( 9.2 MiB) > > > * QA Notice: The following shared libraries lack a SONAME > * /usr/lib64/libdrawgram.so > * /usr/lib64/libdrawtree.so > >strip: x86_64-pc-linux-gnu-strip --strip-unneeded -N __gentoo_check_ldflags__ -R .comment -R .GCC.command.line -R .note.gnu.gold-version > /usr/lib64/libdrawgram.so > /usr/bin/clique > /usr/bin/consense > /usr/lib64/libdrawtree.so > /usr/bin/contml > /usr/bin/contrast > /usr/bin/dnacomp > /usr/bin/dnadist > /usr/bin/dnainvar > /usr/bin/dnaml > /usr/bin/dnamlk > /usr/bin/dnamove > /usr/bin/dnapars > /usr/bin/dnapenny > /usr/bin/dollop > /usr/bin/dolmove > /usr/bin/dolpenny > /usr/bin/drawgram > /usr/bin/drawtree > /usr/bin/factor-phylip > /usr/bin/gendist > /usr/bin/fitch > /usr/bin/kitsch > /usr/bin/mix > /usr/bin/neighbor > /usr/bin/move > /usr/bin/pars > /usr/bin/penny > /usr/bin/proml > /usr/bin/promlk > /usr/bin/protdist > /usr/bin/protpars > /usr/bin/restdist > /usr/bin/restml > /usr/bin/retree > /usr/bin/seqboot > /usr/bin/treedist >>>> Done. > > > >emerge --info: >Portage 2.3.100 (python 3.7.7-final-0, default/linux/amd64/17.1, gcc-10.1.0, glibc-2.31-r5, 5.4.0-1011-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1011-aws-x86_64-AMD_EPYC_7571-with-gentoo-2.7 >KiB Mem: 16011348 total, 976896 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Thu, 11 Jun 2020 14:35:16 +0000 >sh bash 5.0_p17 >ld GNU ld (Gentoo 2.34 p4) 2.34.0 >app-shells/bash: 5.0_p17::gentoo >dev-lang/perl: 5.30.3-r1::gentoo >dev-lang/python: 2.7.18::gentoo, 3.7.7-r2::gentoo, 3.8.3::gentoo >dev-util/pkgconfig: 0.29.2::gentoo >sys-apps/baselayout: 2.7::gentoo >sys-apps/openrc: 0.42.1::gentoo >sys-apps/sandbox: 2.20::gentoo >sys-devel/autoconf: 2.69-r5::gentoo >sys-devel/automake: 1.16.2::gentoo >sys-devel/binutils: 2.34-r1::gentoo >sys-devel/gcc: 10.1.0::gentoo >sys-devel/gcc-config: 2.3::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.7::gentoo (virtual/os-headers) >sys-libs/glibc: 2.31-r5::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-max-age: 24 > sync-rsync-verify-metamanifest: yes > sync-rsync-extra-opts: > sync-rsync-verify-jobs: 1 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="*" >CBUILD="x86_64-pc-linux-gnu" >CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fcommon" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fcommon" >DISTDIR="/usr/portage/distfiles" >EMERGE_DEFAULT_OPTS="--with-bdeps=y --binpkg-respect-use=y -1 -b -k" >ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fcommon" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fcommon" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF-8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j4" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt dri fortran gdbm iconv ipv6 libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python2_7 python3_7" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" >Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS >
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