* Package: sci-biology/phylip-3.696-r2 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox @@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; This ebuild was merged at the following commit: https://github.com/gentoo-mirror/gentoo/commit/b82b65588c884bdad6c46ce75183c948aa2439bc @@@@@ END @@@@@ >>> Unpacking source... >>> Unpacking phylip-3.696.tar.gz to /var/tmp/portage/sci-biology/phylip-3.696-r2/work >>> Source unpacked in /var/tmp/portage/sci-biology/phylip-3.696-r2/work >>> Preparing source in /var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/phylip-3.696-r2/work/phylip-3.696/src ... make -j4 -j1 CC=x86_64-pc-linux-gnu-gcc DC=x86_64-pc-linux-gnu-gcc 'CFLAGS=-O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result' all put Building PHYLIP version 3.696 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o clique.o clique.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o disc.o disc.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o phylip.o phylip.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result clique.o disc.o phylip.o -lm -o clique x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o consense.o consense.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o cons.o cons.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result consense.o phylip.o cons.o -lm -o consense x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o contml.o contml.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o cont.o cont.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result contml.o cont.o phylip.o -lm -o contml x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o contrast.o contrast.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result contrast.o cont.o phylip.o -lm -o contrast x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnacomp.o dnacomp.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o seq.o seq.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnacomp.o seq.o phylip.o -lm -o dnacomp x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnadist.o dnadist.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnadist.o seq.o phylip.o -lm -o dnadist x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnainvar.o dnainvar.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnainvar.o seq.o phylip.o -lm -o dnainvar x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnaml.o dnaml.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnaml.o seq.o phylip.o -lm -o dnaml x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnamlk.o dnamlk.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o mlclock.o mlclock.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o printree.o printree.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnamlk.o seq.o phylip.o mlclock.o printree.o -lm -o dnamlk x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnamove.o dnamove.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o moves.o moves.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnamove.o seq.o moves.o phylip.o -lm -o dnamove x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnapars.o dnapars.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnapars.o seq.o phylip.o -lm -o dnapars x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dnapenny.o dnapenny.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dnapenny.o seq.o phylip.o -lm -o dnapenny x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dolmove.o dolmove.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dollo.o dollo.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dolmove.o disc.o moves.o dollo.o phylip.o -lm -o dolmove x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dollop.o dollop.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dollop.o disc.o dollo.o phylip.o -lm -o dollop x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dolpenny.o dolpenny.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result dolpenny.o disc.o dollo.o phylip.o -lm -o dolpenny x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o factor.o factor.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result factor.o phylip.o -lm -o factor x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o fitch.o fitch.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o dist.o dist.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result fitch.o dist.o phylip.o -lm -o fitch x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o gendist.o gendist.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result gendist.o phylip.o -lm -o gendist x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o kitsch.o kitsch.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result kitsch.o dist.o phylip.o -lm -o kitsch x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o mix.o mix.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o wagner.o wagner.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result mix.o disc.o wagner.o phylip.o -lm -o mix x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o move.o move.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result move.o disc.o moves.o wagner.o phylip.o -lm -o move x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o neighbor.o neighbor.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result neighbor.o dist.o phylip.o -lm -o neighbor x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o pars.o pars.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o discrete.o discrete.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result pars.o discrete.o phylip.o -lm -o pars x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o penny.o penny.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result penny.o disc.o wagner.o phylip.o -lm -o penny x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o proml.o proml.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result proml.o seq.o phylip.o -lm -o proml x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o promlk.o promlk.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result promlk.o seq.o phylip.o mlclock.o printree.o -lm -o promlk x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o protdist.o protdist.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result protdist.o seq.o phylip.o -lm -o protdist x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o protpars.o protpars.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result protpars.o seq.o phylip.o -lm -o protpars x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o restdist.o restdist.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result restdist.o seq.o phylip.o -lm -o restdist x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o restml.o restml.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result restml.o seq.o phylip.o -lm -o restml x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o retree.o retree.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result retree.o moves.o phylip.o -lm -o retree x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o seqboot.o seqboot.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result seqboot.o seq.o phylip.o -lm -o seqboot x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c -o treedist.o treedist.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result treedist.o cons.o phylip.o -lm -o treedist x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c drawgram.c drawgram.c: In function ‘drawgram’: drawgram.c:2111:9: warning: implicit declaration of function ‘makebox’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;] 2111 | makebox(fontname,&xoffset,&yoffset,&scale,spp); | ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c draw.c draw.c: In function ‘metricforfont’: draw.c:2603:53: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2603 | fontmetric[i-31] = timesroman_metric[i-31], | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2602:15: note: within this loop 2602 | for (i=31;i<256;++i) | ^~~ draw.c:2591:49: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2591 | fontmetric[i-31] = timesroman_metric[i-31], | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2590:11: note: within this loop 2590 | for (i=31;i<256;++i) | ^~~ draw.c:2551:48: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2551 | fontmetric[i-31] = timesbolditalic_metric[i-31]; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2550:5: note: within this loop 2550 | for (i=31;i<256;++i) | ^~~ draw.c:2548:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2548 | fontmetric[i-31] = timesbold_metric[i-31]; | ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2547:5: note: within this loop 2547 | for (i=31;i<256;++i) | ^~~ draw.c:2545:44: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2545 | fontmetric[i-31] = timesitalic_metric[i-31]; | ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2544:5: note: within this loop 2544 | for (i=31;i<256;++i) | ^~~ draw.c:2542:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2542 | fontmetric[i-31] = timesroman_metric[i-31]; | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2541:5: note: within this loop 2541 | for (i=31;i<256;++i) | ^~~ draw.c:2539:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2539 | fontmetric[i-31] = timesroman_metric[i-31]; | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2538:5: note: within this loop 2538 | for (i=31;i<256;++i) | ^~~ draw.c:2536:46: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2536 | fontmetric[i-31] = helveticabold_metric[i-31]; | ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2535:5: note: within this loop 2535 | for (i=31;i<256;++i) | ^~~ draw.c:2532:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2532 | fontmetric[i-31] = helvetica_metric[i-31]; | ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2531:5: note: within this loop 2531 | for (i=31;i<256;++i) | ^~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -c draw2.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result draw.o draw2.o drawgram.o phylip.o -lm -o drawgram x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -shared -fPIC -c drawtree.c drawtree.c: In function ‘drawtree’: drawtree.c:3017:9: warning: implicit declaration of function ‘makebox’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;] 3017 | makebox(fontname,&xoffset,&yoffset,&scale,spp); | ^~~~~~~ x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result draw.o draw2.o drawtree.o phylip.o -lm -o drawtree x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -o libdrawgram.so -shared -fPIC drawgram.c draw.c draw2.c phylip.c drawgram.c: In function ‘drawgram’: drawgram.c:2111:9: warning: implicit declaration of function ‘makebox’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;] 2111 | makebox(fontname,&xoffset,&yoffset,&scale,spp); | ^~~~~~~ draw.c: In function ‘metricforfont’: draw.c:2603:53: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2603 | fontmetric[i-31] = timesroman_metric[i-31], | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2602:15: note: within this loop 2602 | for (i=31;i<256;++i) | ^~~ draw.c:2591:49: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2591 | fontmetric[i-31] = timesroman_metric[i-31], | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2590:11: note: within this loop 2590 | for (i=31;i<256;++i) | ^~~ draw.c:2551:48: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2551 | fontmetric[i-31] = timesbolditalic_metric[i-31]; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2550:5: note: within this loop 2550 | for (i=31;i<256;++i) | ^~~ draw.c:2548:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2548 | fontmetric[i-31] = timesbold_metric[i-31]; | ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2547:5: note: within this loop 2547 | for (i=31;i<256;++i) | ^~~ draw.c:2545:44: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2545 | fontmetric[i-31] = timesitalic_metric[i-31]; | ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2544:5: note: within this loop 2544 | for (i=31;i<256;++i) | ^~~ draw.c:2542:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2542 | fontmetric[i-31] = timesroman_metric[i-31]; | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2541:5: note: within this loop 2541 | for (i=31;i<256;++i) | ^~~ draw.c:2539:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2539 | fontmetric[i-31] = timesroman_metric[i-31]; | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2538:5: note: within this loop 2538 | for (i=31;i<256;++i) | ^~~ draw.c:2536:46: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2536 | fontmetric[i-31] = helveticabold_metric[i-31]; | ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2535:5: note: within this loop 2535 | for (i=31;i<256;++i) | ^~~ draw.c:2532:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2532 | fontmetric[i-31] = helvetica_metric[i-31]; | ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2531:5: note: within this loop 2531 | for (i=31;i<256;++i) | ^~~ x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -frecord-gcc-switches -fcommon -Wno-unused-result -o libdrawtree.so -shared -fPIC drawtree.c draw.c draw2.c phylip.c drawtree.c: In function ‘drawtree’: drawtree.c:3017:9: warning: implicit declaration of function ‘makebox’ []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration]8;;] 3017 | makebox(fontname,&xoffset,&yoffset,&scale,spp); | ^~~~~~~ draw.c: In function ‘metricforfont’: draw.c:2603:53: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2603 | fontmetric[i-31] = timesroman_metric[i-31], | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2602:15: note: within this loop 2602 | for (i=31;i<256;++i) | ^~~ draw.c:2591:49: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2591 | fontmetric[i-31] = timesroman_metric[i-31], | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2590:11: note: within this loop 2590 | for (i=31;i<256;++i) | ^~~ draw.c:2551:48: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2551 | fontmetric[i-31] = timesbolditalic_metric[i-31]; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2550:5: note: within this loop 2550 | for (i=31;i<256;++i) | ^~~ draw.c:2548:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2548 | fontmetric[i-31] = timesbold_metric[i-31]; | ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2547:5: note: within this loop 2547 | for (i=31;i<256;++i) | ^~~ draw.c:2545:44: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2545 | fontmetric[i-31] = timesitalic_metric[i-31]; | ~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2544:5: note: within this loop 2544 | for (i=31;i<256;++i) | ^~~ draw.c:2542:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2542 | fontmetric[i-31] = timesroman_metric[i-31]; | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2541:5: note: within this loop 2541 | for (i=31;i<256;++i) | ^~~ draw.c:2539:43: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2539 | fontmetric[i-31] = timesroman_metric[i-31]; | ~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2538:5: note: within this loop 2538 | for (i=31;i<256;++i) | ^~~ draw.c:2536:46: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2536 | fontmetric[i-31] = helveticabold_metric[i-31]; | ~~~~~~~~~~~~~~~~~~~~^~~~~~ draw.c:2535:5: note: within this loop 2535 | for (i=31;i<256;++i) | ^~~ draw.c:2532:42: warning: iteration 224 invokes undefined behavior []8;;https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Waggressive-loop-optimizations-Waggressive-loop-optimizations]8;;] 2532 | fontmetric[i-31] = helvetica_metric[i-31]; | ~~~~~~~~~~~~~~~~^~~~~~ draw.c:2531:5: note: within this loop 2531 | for (i=31;i<256;++i) | ^~~ Finished compiling. Installing PHYLIP v3.6 binaries in ../exe Installing dynamic libraries in ../exe Installing jar files in ../exe Installing font files in ../exe Finished installation. >>> Source compiled. >>> Test phase [not enabled]: sci-biology/phylip-3.696-r2 >>> Install sci-biology/phylip-3.696-r2 into /var/tmp/portage/sci-biology/phylip-3.696-r2/image/ >>> Completed installing sci-biology/phylip-3.696-r2 into /var/tmp/portage/sci-biology/phylip-3.696-r2/image/ * Final size of build directory: 24712 KiB (24.1 MiB) * Final size of installed tree: 9440 KiB ( 9.2 MiB) * QA Notice: The following shared libraries lack a SONAME * /usr/lib64/libdrawgram.so * /usr/lib64/libdrawtree.so strip: x86_64-pc-linux-gnu-strip --strip-unneeded -N __gentoo_check_ldflags__ -R .comment -R .GCC.command.line -R .note.gnu.gold-version /usr/lib64/libdrawgram.so /usr/bin/clique /usr/bin/consense /usr/lib64/libdrawtree.so /usr/bin/contml /usr/bin/contrast /usr/bin/dnacomp /usr/bin/dnadist /usr/bin/dnainvar /usr/bin/dnaml /usr/bin/dnamlk /usr/bin/dnamove /usr/bin/dnapars /usr/bin/dnapenny /usr/bin/dollop /usr/bin/dolmove /usr/bin/dolpenny /usr/bin/drawgram /usr/bin/drawtree /usr/bin/factor-phylip /usr/bin/gendist /usr/bin/fitch /usr/bin/kitsch /usr/bin/mix /usr/bin/neighbor /usr/bin/move /usr/bin/pars /usr/bin/penny /usr/bin/proml /usr/bin/promlk /usr/bin/protdist /usr/bin/protpars /usr/bin/restdist /usr/bin/restml /usr/bin/retree /usr/bin/seqboot /usr/bin/treedist >>> Done. emerge --info: Portage 2.3.100 (python 3.7.7-final-0, default/linux/amd64/17.1, gcc-10.1.0, glibc-2.31-r5, 5.4.0-1011-aws x86_64) ================================================================= System uname: Linux-5.4.0-1011-aws-x86_64-AMD_EPYC_7571-with-gentoo-2.7 KiB Mem: 16011348 total, 976896 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Thu, 11 Jun 2020 14:35:16 +0000 sh bash 5.0_p17 ld GNU ld (Gentoo 2.34 p4) 2.34.0 app-shells/bash: 5.0_p17::gentoo dev-lang/perl: 5.30.3-r1::gentoo dev-lang/python: 2.7.18::gentoo, 3.7.7-r2::gentoo, 3.8.3::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.7::gentoo sys-apps/openrc: 0.42.1::gentoo sys-apps/sandbox: 2.20::gentoo sys-devel/autoconf: 2.69-r5::gentoo sys-devel/automake: 1.16.2::gentoo sys-devel/binutils: 2.34-r1::gentoo sys-devel/gcc: 10.1.0::gentoo sys-devel/gcc-config: 2.3::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.7::gentoo (virtual/os-headers) sys-libs/glibc: 2.31-r5::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fcommon" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fcommon" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--with-bdeps=y --binpkg-respect-use=y -1 -b -k" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fcommon" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fcommon" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="C.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEOPTS="-j4" PKGDIR="/root/.packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl amd64 berkdb bzip2 cli crypt dri fortran gdbm iconv ipv6 libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python2_7 python3_7" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS