build.log

avogadrolibs-1.93.0.log (text/x-log), 8.48 KB, created by urcindalo on 2020-03-18 09:10:03 UTC

[32;01m * [39;49;00mPackage:    sci-libs/avogadrolibs-1.93.0
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 archive elibc_glibc kernel_linux qt5 userland_GNU vtk
[32;01m * [39;49;00mFEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking avogadrolibs-1.93.0.tar.gz to /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work
>>> Unpacking linux64-genXrdPattern to /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work
unpack linux64-genXrdPattern: file format not recognized. Ignoring.
>>> Source unpacked in /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work
>>> Preparing source in /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0 ...
 [32;01m*[0m Applying avogadrolibs-1.93.0-fix_AvogadroLibsConfig.patch ...
[A[129C [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build"
cmake -C /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_DOCDIR=/usr/share/doc/avogadrolibs-1.93.0 -DUSE_PROTOCALL=OFF -DBUILD_GPL_PLUGINS=ON -DUSE_MOLEQUEUE=ON -DUSE_MMTF=OFF -DUSE_LIBMSYM=OFF -DUSE_SPGLIB=OFF -DUSE_PYTHON=OFF -DUSE_LIBARCHIVE=yes -DBUILD_DOCUMENTATION=no -DUSE_HDF5=no -DENABLE_TRANSLATIONS=yes -DUSE_OPENGL=yes -DUSE_QT=yes -DBUILD_STATIC_PLUGINS=ON -DENABLE_TESTING=no -DUSE_VTK=yes -DBUNDLED_GENXRDPATTERN=/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/genXrdPattern -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0
loading initial cache file /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 9.2.0
-- The CXX compiler identification is GNU 9.2.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success
-- Found Git: /usr/bin/git (found version "2.24.1") 
-- Could not use git to determine source version, using version 1.93.0
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") 
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenGL.cmake:275 (message):
  Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when
  available.  Run "cmake --help-policy CMP0072" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.

  FindOpenGL found both a legacy GL library:

    OPENGL_gl_LIBRARY: /usr/lib64/libGL.so

  and GLVND libraries for OpenGL and GLX:

    OPENGL_opengl_LIBRARY: /usr/lib64/libOpenGL.so
    OPENGL_glx_LIBRARY: /usr/lib64/libGLX.so

  OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for
  compatibility with CMake 3.10 and below the legacy GL library will be used.
Call Stack (most recent call first):
  avogadro/rendering/CMakeLists.txt:6 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found OpenGL: /usr/lib64/libOpenGL.so   
-- Found GLEW: /usr/include  
-- Found PythonInterp: /usr/bin/python (found suitable version "3.6.10", minimum required is "2") 
CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenGL.cmake:275 (message):
  Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when
  available.  Run "cmake --help-policy CMP0072" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.

  FindOpenGL found both a legacy GL library:

    OPENGL_gl_LIBRARY: /usr/lib64/libGL.so

  and GLVND libraries for OpenGL and GLX:

    OPENGL_opengl_LIBRARY: /usr/lib64/libOpenGL.so
    OPENGL_glx_LIBRARY: /usr/lib64/libGLX.so

  OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for
  compatibility with CMake 3.10 and below the legacy GL library will be used.
Call Stack (most recent call first):
  avogadro/vtk/CMakeLists.txt:5 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Downloading genXrdPattern executable from https://github.com/psavery/genXrdPattern/releases/download/1.0-static/linux64-genXrdPattern
CMake Error at cmake/DownloadGenXrdPattern.cmake:40 (file):
  file DOWNLOAD HASH mismatch

    for file: [/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/avogadro/qtplugins/plotxrd/tmp/genXrdPattern]
      expected hash: [e1b3c1d6b951ed83a037567490d75f1d]
        actual hash: [d41d8cd98f00b204e9800998ecf8427e]
             status: [6;"Couldn't resolve host name"]

Call Stack (most recent call first):
  avogadro/qtplugins/plotxrd/CMakeLists.txt:4 (DownloadGenXrdPattern)


Avogadro Generators not found at /var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0/../avogadrogenerators!
-- Found LIBARCHIVE: /usr/include  
CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenGL.cmake:275 (message):
  Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when
  available.  Run "cmake --help-policy CMP0072" for policy details.  Use the
  cmake_policy command to set the policy and suppress this warning.

  FindOpenGL found both a legacy GL library:

    OPENGL_gl_LIBRARY: /usr/lib64/libGL.so

  and GLVND libraries for OpenGL and GLX:

    OPENGL_opengl_LIBRARY: /usr/lib64/libOpenGL.so
    OPENGL_glx_LIBRARY: /usr/lib64/libGLX.so

  OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for
  compatibility with CMake 3.10 and below the legacy GL library will be used.
Call Stack (most recent call first):
  avogadro/qtplugins/overlayaxes/CMakeLists.txt:3 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -O3 -march=znver1
C++             -O3 -march=znver1
Linker flags:
Executable      -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed
Module          -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed
Shared          -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed

-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build/CMakeFiles/CMakeOutput.log".
 [31;01m*[0m ERROR: sci-libs/avogadrolibs-1.93.0::gentoo failed (configure phase):
 [31;01m*[0m   cmake failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  125:  Called src_configure
 [31;01m*[0m   environment, line 2054:  Called cmake-utils_src_configure
 [31;01m*[0m   environment, line  902:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/avogadrolibs-1.93.0::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/avogadrolibs-1.93.0::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0_build'
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/avogadrolibs-1.93.0/work/avogadrolibs-1.93.0'