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Gentoo's Bugzilla – Attachment 607236 Details for
Bug 707028
sci-biology/poa-2-r1 : fails to build with -fno-common or gcc-10
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sci-biology:poa-2-r1:20200128-210632.log
sci-biology:poa-2-r1:20200128-210632.log (text/plain), 137.45 KB, created by
Toralf Förster
on 2020-01-28 21:20:13 UTC
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sci-biology:poa-2-r1:20200128-210632.log
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Creator:
Toralf Förster
Created:
2020-01-28 21:20:13 UTC
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137.45 KB
patch
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> * Package: sci-biology/poa-2-r1 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking poaV2.tar.gz to /var/tmp/portage/sci-biology/poa-2-r1/work >>>> Source unpacked in /var/tmp/portage/sci-biology/poa-2-r1/work >>>> Preparing source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ... > * Applying 2-respect-flags.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ... >make -j1 CC=x86_64-pc-linux-gnu-gcc 'OPT_CFLAGS=-O2 -pipe -march=native -fno-common' poa >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o align_score.o align_score.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o main.o main.c >In file included from lpo.h:6, > from main.c:3: >main.c: In function âmainâ: >./default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >main.c:183:3: note: in expansion of macro âCALLOCâ > 183 | CALLOC (input_seqs, max_input_seqs, LPOSequence_T *); > | ^~~~~~ >./default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >./default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >main.c:221:2: note: in expansion of macro âREALLOCâ > 221 | REALLOC (input_seqs, max_input_seqs, LPOSequence_T *); > | ^~~~~~~ >./default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >In file included from ./default.h:16, > from lpo.h:6, > from main.c:3: >main.c:225:30: warning: format â%sâ expects argument of type âchar *â, but argument 3 has type âFILE *â {aka âstruct _IO_FILE *â} [-Wformat=] > 225 | WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting", > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 226 | po_list_file),"$Revision: 1.2.2.9 $"); > | ~~~~~~~~~~~~ > | | > | FILE * {aka struct _IO_FILE *} >./black_flag.h:212:10: note: in definition of macro âWARN_MSGâ > 212 | (sprintf MESSAGE,\ > | ^~~~~~~ >main.c:225:59: note: format string is defined here > 225 | WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting", > | ~^ > | | > | char * >In file included from lpo.h:6, > from main.c:3: >./default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >main.c:254:2: note: in expansion of macro âREALLOCâ > 254 | REALLOC (input_seqs, max_input_seqs, LPOSequence_T *); > | ^~~~~~~ >./default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o black_flag.o black_flag.c >In file included from black_flag.c:4: >black_flag.c: In function âblack_flag_init_argsâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >black_flag.c:109:3: note: in expansion of macro âCALLOCâ > 109 | CALLOC(Program_name,len,char); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o seq_util.o seq_util.c >In file included from seq_util.c:2: >seq_util.c: In function âread_score_matrixâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >seq_util.c:170:3: note: in expansion of macro âCALLOCâ > 170 | CALLOC (m->gap_penalty_x, m->max_gap_length+2, LPOScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >seq_util.c:171:3: note: in expansion of macro âCALLOCâ > 171 | CALLOC (m->gap_penalty_y, m->max_gap_length+2, LPOScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o fasta_format.o fasta_format.c >fasta_format.c: In function âread_fastaâ: >fasta_format.c:48:2: warning: implicit declaration of function âstringptr_cat_posâ; did you mean âstringptr_catâ? [-Wimplicit-function-declaration] > 48 | stringptr_cat_pos(&tmp_seq,line,&length); > | ^~~~~~~~~~~~~~~~~ > | stringptr_cat >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o msa_format.o msa_format.c >In file included from msa_format.h:17, > from msa_format.c:17: >msa_format.c: In function âread_clustalâ: >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:169:7: note: in expansion of macro âREALLOCâ > 169 | REALLOC (seq_names, n_seqs, char *); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:171:7: note: in expansion of macro âREALLOCâ > 171 | REALLOC (seq_titles, n_seqs, char *); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:174:7: note: in expansion of macro âREALLOCâ > 174 | REALLOC (aln_mat, n_seqs, char *); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:176:7: note: in expansion of macro âREALLOCâ > 176 | REALLOC (aln_lengths, n_seqs, int); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:184:22: warning: format â%dâ expects argument of type âintâ, but argument 6 has type âsize_tâ {aka âlong unsigned intâ} [-Wformat=] > 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ > | ~~~~~ > | | > | size_t {aka long unsigned int} >default.h:184:22: note: in definition of macro âREALLOCâ > 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >default.h:184:68: note: format string is defined here > 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 3 has type âsize_tâ {aka âlong unsigned intâ} [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ >msa_format.c:185:5: note: in expansion of macro âREALLOCâ > 185 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); > | ^~~~~~~ >default.h:196:34: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:185:5: note: in expansion of macro âREALLOCâ > 185 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >msa_format.c: In function âread_pirâ: >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:248:7: note: in expansion of macro âREALLOCâ > 248 | REALLOC (seq_names, n_seqs, char *); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:250:7: note: in expansion of macro âREALLOCâ > 250 | REALLOC (seq_titles, n_seqs, char *); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:252:7: note: in expansion of macro âREALLOCâ > 252 | REALLOC (aln_mat, n_seqs, char *); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:254:7: note: in expansion of macro âREALLOCâ > 254 | REALLOC (aln_lengths, n_seqs, int); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:184:22: warning: format â%dâ expects argument of type âintâ, but argument 6 has type âsize_tâ {aka âlong unsigned intâ} [-Wformat=] > 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ > | ~~~~~ >default.h:184:22: note: in definition of macro âREALLOCâ > 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >default.h:184:68: note: format string is defined here > 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 3 has type âsize_tâ {aka âlong unsigned intâ} [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ >msa_format.c:268:7: note: in expansion of macro âREALLOCâ > 268 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); > | ^~~~~~~ >default.h:196:34: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:268:7: note: in expansion of macro âREALLOCâ > 268 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >msa_format.c: In function âlpo_from_aln_matâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:318:3: note: in expansion of macro âCALLOCâ > 318 | CALLOC (column_ids, n_seqs+1, int *); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:319:3: note: in expansion of macro âCALLOCâ > 319 | CALLOC (res_ids, n_seqs+1, int *); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:326:5: note: in expansion of macro âCALLOCâ > 326 | CALLOC (column_ids[i], max_aln_length, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:327:5: note: in expansion of macro âCALLOCâ > 327 | CALLOC (res_ids[i], max_aln_length, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:334:3: note: in expansion of macro âCALLOCâ > 334 | CALLOC (consens_row, max_aln_length, char); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:347:3: note: in expansion of macro âCALLOCâ > 347 | CALLOC (lposeq, 1, LPOSequence_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:351:3: note: in expansion of macro âCALLOCâ > 351 | CALLOC (lposeq->sequence, max_aln_length+1, char); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:369:3: note: in expansion of macro âREALLOCâ > 369 | REALLOC (lposeq->sequence, len+1, char); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:375:5: note: in expansion of macro âCALLOCâ > 375 | CALLOC (curr_seq, 1, LPOSequence_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:380:5: note: in expansion of macro âCALLOCâ > 380 | CALLOC (curr_seq->sequence, aln_lengths[i]+1, char); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:398:5: note: in expansion of macro âREALLOCâ > 398 | REALLOC (curr_seq->sequence, len+1, char); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >msa_format.c:404:5: warning: implicit declaration of function âbuild_seq_to_po_indexâ [-Wimplicit-function-declaration] > 404 | build_seq_to_po_index (lposeq); > | ^~~~~~~~~~~~~~~~~~~~~ >In file included from msa_format.h:17, > from msa_format.c:17: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:406:5: note: in expansion of macro âCALLOCâ > 406 | CALLOC (al_x, len, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:407:5: note: in expansion of macro âCALLOCâ > 407 | CALLOC (al_y, lposeq->length, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >msa_format.c:428:5: warning: implicit declaration of function âfuse_ring_identitiesâ [-Wimplicit-function-declaration] > 428 | fuse_ring_identities (lposeq->length, lposeq->letter, > | ^~~~~~~~~~~~~~~~~~~~ >In file included from msa_format.h:17, > from msa_format.c:17: >msa_format.c: In function âfilter_sequence_setâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >msa_format.c:485:3: note: in expansion of macro âCALLOCâ > 485 | CALLOC (keep_seq, n_seqs, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o align_lpo2.o align_lpo2.c >In file included from align_lpo2.c:2: >align_lpo2.c: In function âget_seq_left_and_finalâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:60:3: note: in expansion of macro âCALLOCâ > 60 | CALLOC (is_final_node_x, len_x, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:66:3: note: in expansion of macro âCALLOCâ > 66 | CALLOC (x_left, len_x, LPOLetterLink_T *); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:70:7: note: in expansion of macro âCALLOCâ > 70 | CALLOC (x_left[i], 1, LPOLetterLink_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >align_lpo2.c: In function âtrace_back_lpo_alignmentâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:96:3: note: in expansion of macro âCALLOCâ > 96 | CALLOC (x_al, len_x, LPOLetterRef_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:97:3: note: in expansion of macro âCALLOCâ > 97 | CALLOC (y_al, len_y, LPOLetterRef_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >align_lpo2.c: In function âalign_lpoâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:185:3: note: in expansion of macro âCALLOCâ > 185 | CALLOC (next_gap_array, max_gap_length + 2, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:186:3: note: in expansion of macro âCALLOCâ > 186 | CALLOC (next_perp_gap_array, max_gap_length + 2, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:199:3: note: in expansion of macro âCALLOCâ > 199 | CALLOC (move, len_y, DPMove_T *); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:201:5: note: in expansion of macro âCALLOCâ > 201 | CALLOC (move[i], len_x, DPMove_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:204:3: note: in expansion of macro âCALLOCâ > 204 | CALLOC (init_col_score, len_y+1, DPScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:207:3: note: in expansion of macro âCALLOCâ > 207 | CALLOC (curr_score, len_x+1, DPScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo2.c:209:3: note: in expansion of macro âCALLOCâ > 209 | CALLOC (prev_score, len_x+1, DPScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o align_lpo_po2.o align_lpo_po2.c >In file included from align_lpo_po2.c:2: >align_lpo_po2.c: In function âget_lpo_statsâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:41:3: note: in expansion of macro âCALLOCâ > 41 | CALLOC (node_type, len, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:42:3: note: in expansion of macro âCALLOCâ > 42 | CALLOC (refs_from_right, len, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:43:3: note: in expansion of macro âCALLOCâ > 43 | CALLOC (tmp, len, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:44:3: note: in expansion of macro âCALLOCâ > 44 | CALLOC (left_links, len, LPOLetterLink_T *); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:71:7: note: in expansion of macro âCALLOCâ > 71 | CALLOC (left_links[i], 1, LPOLetterLink_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >align_lpo_po2.c: In function âtrace_back_lpo_alignmentâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:120:3: note: in expansion of macro âCALLOCâ > 120 | CALLOC (x_al, len_x, LPOLetterRef_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:121:3: note: in expansion of macro âCALLOCâ > 121 | CALLOC (y_al, len_y, LPOLetterRef_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >align_lpo_po2.c: In function âalign_lpo_poâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:227:3: note: in expansion of macro âCALLOCâ > 227 | CALLOC (next_gap_array, max_gap_length + 2, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:228:3: note: in expansion of macro âCALLOCâ > 228 | CALLOC (next_perp_gap_array, max_gap_length + 2, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:254:3: note: in expansion of macro âCALLOCâ > 254 | CALLOC (move, len_y, DPMove_T *); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:256:5: note: in expansion of macro âCALLOCâ > 256 | CALLOC (move[i], len_x, DPMove_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:259:3: note: in expansion of macro âCALLOCâ > 259 | CALLOC (init_col_score, len_y+1, DPScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:262:3: note: in expansion of macro âCALLOCâ > 262 | CALLOC (score_rows, len_y+1, DPScore_T *); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:264:3: note: in expansion of macro âCALLOCâ > 264 | CALLOC (score_rows[-1], len_x+1, DPScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >align_lpo_po2.c:312:5: note: in expansion of macro âCALLOCâ > 312 | CALLOC (score_rows[i], len_x+1, DPScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >align_lpo_po2.c:438:44: warning: format â%ldâ expects argument of type âlong intâ, but argument 4 has type âintâ [-Wformat=] > 438 | fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y); > | ~~^ ~~~~~~~~~ > | | | > | long int int > | %d >align_lpo_po2.c:438:69: warning: format â%ldâ expects argument of type âlong intâ, but argument 6 has type âintâ [-Wformat=] > 438 | intf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y); > | ~~^ ~~~~~~~~~ > | | | > | long int int > | %d >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o buildup_lpo.o buildup_lpo.c >In file included from buildup_lpo.c:3: >buildup_lpo.c: In function âclip_unaligned_endsâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:146:3: note: in expansion of macro âCALLOCâ > 146 | CALLOC(temp,seq->length,LPOLetter_T); /* ALLOCATE NEW letter[] COPY */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >buildup_lpo.c: In function âread_seqpair_scorefileâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:327:3: note: in expansion of macro âCALLOCâ > 327 | CALLOC (adj_score, nseq, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:330:3: note: in expansion of macro âCALLOCâ > 330 | CALLOC (score_list, max_nscore, SeqPairScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:353:2: note: in expansion of macro âREALLOCâ > 353 | REALLOC (score_list, max_nscore, SeqPairScore_T); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:374:2: note: in expansion of macro âREALLOCâ > 374 | REALLOC (score_list, max_nscore, SeqPairScore_T); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:394:2: note: in expansion of macro âREALLOCâ > 394 | REALLOC (score_list, max_nscore, SeqPairScore_T); > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >buildup_lpo.c: In function âbuildup_progressive_lpoâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:445:3: note: in expansion of macro âCALLOCâ > 445 | CALLOC(seq_cluster,nseq,int); /* MAPS SEQS (or CLUSTERS) TO CLUSTER THEY'RE IN */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:446:3: note: in expansion of macro âCALLOCâ > 446 | CALLOC(seq_id_in_cluster,nseq,int); /* INDEXES SEQS (or CLUSTERS) WITHIN EACH CLUSTER */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:447:3: note: in expansion of macro âCALLOCâ > 447 | CALLOC(cluster_size,nseq,int); /* COUNTS SEQS IN SAME CLUSTER (updated w/ merges) */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:448:3: note: in expansion of macro âCALLOCâ > 448 | CALLOC(initial_nseq,nseq,int); /* COUNTS SEQS INITIALLY IN EACH CLUSTER (not updated w/ merges) */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >buildup_lpo.c:538:5: note: in expansion of macro âCALLOCâ > 538 | CALLOC (perm, nseq_tot, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o lpo.o lpo.c >In file included from lpo.c:3: >lpo.c: In function âlpo_initâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:15:3: note: in expansion of macro âCALLOCâ > 15 | CALLOC(seq->letter,seq->length,LPOLetter_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âbuild_seq_to_po_indexâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:157:5: note: in expansion of macro âCALLOCâ > 157 | CALLOC(seq->source_seq[i].seq_to_po,seq->source_seq[i].length,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:158:5: note: in expansion of macro âCALLOCâ > 158 | CALLOC(seq->source_seq[i].po_to_seq,seq->length,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:159:5: note: in expansion of macro âCALLOCâ > 159 | CALLOC(seq->source_seq[i].sequence,seq->source_seq[i].length+1,char); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âsave_lpo_sourceâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:212:5: note: in expansion of macro âCALLOCâ > 212 | CALLOC(memptr,BUF,ATYPE) } \ > | ^~~~~~ >lpo.c:189:3: note: in expansion of macro âREBUFFâ > 189 | REBUFF(seq->source_seq,seq->nsource_seq,SOURCE_SEQ_BUFFER_CHUNK, > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:215:5: note: in expansion of macro âREALLOCâ > 215 | REALLOC(memptr,(NUM)+(BUF),ATYPE); \ > | ^~~~~~~ >lpo.c:189:3: note: in expansion of macro âREBUFFâ > 189 | REBUFF(seq->source_seq,seq->nsource_seq,SOURCE_SEQ_BUFFER_CHUNK, > | ^~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âsave_lpo_source_listâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:213:3: note: in expansion of macro âCALLOCâ > 213 | CALLOC(list,nsource_seq,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âadd_lpo_linkâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:238:3: note: in expansion of macro âCALLOCâ > 238 | CALLOC(list->more,1,LPOLetterLink_T); /* ADD ENTRY TO LINKED LIST */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âadd_lpo_sourcesâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:252:7: note: in expansion of macro âCALLOCâ > 252 | CALLOC(new_s->more,1,LPOLetterSource_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âreindex_lpo_source_seqsâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:270:3: note: in expansion of macro âCALLOCâ > 270 | CALLOC (map, len, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:271:3: note: in expansion of macro âCALLOCâ > 271 | CALLOC (invmap, len, int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âreindex_lpo_fusionâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:427:3: note: in expansion of macro âCALLOCâ > 427 | CALLOC(do_fuse,len_y,char); /* MARK POSITIONS TO FUSE seq_y TO seq_x */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âcopy_fuse_lpo_remapâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:500:3: note: in expansion of macro âCALLOCâ > 500 | CALLOC(new_seq,1,LPOSequence_T); /* CREATE A NEW HOLDER */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:501:3: note: in expansion of macro âCALLOCâ > 501 | CALLOC(new_x,len_x,LPOLetterRef_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:502:3: note: in expansion of macro âCALLOCâ > 502 | CALLOC(new_y,len_y,LPOLetterRef_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:505:3: note: in expansion of macro âCALLOCâ > 505 | CALLOC(new_lpo,new_len,LPOLetter_T); /* ALLOCATE NEW LINEARIZED PO */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âcopy_lpoâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:564:3: note: in expansion of macro âCALLOCâ > 564 | CALLOC(x_to_y,holder_x->length,LPOLetterRef_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo.c: In function âfuse_lpo_remapâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:618:3: note: in expansion of macro âCALLOCâ > 618 | CALLOC(new_x,len_x,LPOLetterRef_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:619:3: note: in expansion of macro âCALLOCâ > 619 | CALLOC(new_y,len_y,LPOLetterRef_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo.c:622:3: note: in expansion of macro âREALLOCâ > 622 | REALLOC(seq_x,new_len,LPOLetter_T); /* EXPAND seq_x TO HOLD FUSED LPO */ > | ^~~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o heaviest_bundle.o heaviest_bundle.c >In file included from heaviest_bundle.c:3: >heaviest_bundle.c: In function âheaviest_bundleâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >heaviest_bundle.c:27:3: note: in expansion of macro âCALLOCâ > 27 | CALLOC(path,len,LPOLetterRef_T); /* GET MEMORY FOR DYNAMIC PROGRAMMING */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >heaviest_bundle.c:28:3: note: in expansion of macro âCALLOCâ > 28 | CALLOC(score,len,LPOScore_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >heaviest_bundle.c:29:3: note: in expansion of macro âCALLOCâ > 29 | CALLOC(contains_pos,nsource_seq,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >heaviest_bundle.c:67:3: note: in expansion of macro âCALLOCâ > 67 | CALLOC(best_path,len,LPOLetterRef_T); /* MEMORY FOR STORING BEST PATH */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >heaviest_bundle.c: In function âassign_sequence_bundle_idâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >heaviest_bundle.c:90:3: note: in expansion of macro âCALLOCâ > 90 | CALLOC(bundle_count,seq->nsource_seq,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o lpo_format.o lpo_format.c >In file included from lpo_format.c:3: >lpo_format.c: In function âread_lpoâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:60:3: note: in expansion of macro âCALLOCâ > 60 | CALLOC(seq,1,LPOSequence_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:71:3: note: in expansion of macro âCALLOCâ > 71 | CALLOC(seq->letter,length,LPOLetter_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:241:5: note: in expansion of macro âCALLOCâ > 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~ >lpo_format.c:72:3: note: in expansion of macro âGETMEMâ > 72 | GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:245:5: note: in expansion of macro âREALLOCâ > 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~~ >lpo_format.c:72:3: note: in expansion of macro âGETMEMâ > 72 | GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); > | ^~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:73:3: note: in expansion of macro âCALLOCâ > 73 | CALLOC(pos_count,nsource_seq,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo_format.c: In function âread_lpo_selectâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:159:3: note: in expansion of macro âCALLOCâ > 159 | CALLOC(seq,1,LPOSequence_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:170:3: note: in expansion of macro âCALLOCâ > 170 | CALLOC(seq->letter,length,LPOLetter_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:241:5: note: in expansion of macro âCALLOCâ > 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~ >lpo_format.c:171:3: note: in expansion of macro âGETMEMâ > 171 | GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:245:5: note: in expansion of macro âREALLOCâ > 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~~ >lpo_format.c:171:3: note: in expansion of macro âGETMEMâ > 171 | GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); > | ^~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:172:3: note: in expansion of macro âCALLOCâ > 172 | CALLOC(pos_count,nsource_seq,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:196:3: note: in expansion of macro âCALLOCâ > 196 | CALLOC(iseq_compact,nsource_seq,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:197:3: note: in expansion of macro âCALLOCâ > 197 | CALLOC(last_pos,nsource_seq,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:198:3: note: in expansion of macro âCALLOCâ > 198 | CALLOC(match_pos,nsource_seq,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:229:3: note: in expansion of macro âCALLOCâ > 229 | CALLOC(link_list,seq->length,int); /*TEMPORARY DATA FOR COMPACTION MAPPING */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:230:3: note: in expansion of macro âCALLOCâ > 230 | CALLOC(pos_compact,seq->length,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:231:3: note: in expansion of macro âCALLOCâ > 231 | CALLOC(ring_old,seq->length,int); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo_format.c: In function âxlate_lpo_to_alâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:353:3: note: in expansion of macro âCALLOCâ > 353 | CALLOC(seq_pos,seq->nsource_seq,char *); /* ALLOCATE MAP ARRAY*/ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:354:3: note: in expansion of macro âCALLOCâ > 354 | CALLOC(p,seq->nsource_seq*nring,char); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >lpo_format.c:374:5: note: in expansion of macro âCALLOCâ > 374 | CALLOC(include_in_save,nring,char); /* BLANK FLAGS: WHAT RINGS TO SHOW*/ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >lpo_format.c: In function âread_lpoâ: >lpo_format.c:61:3: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 61 | fscanf(ifile,"VERSION=%s",version); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >lpo_format.c:62:3: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 62 | fscanf(ifile," NAME=%[^\n]",name); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >lpo_format.c:63:3: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 63 | fscanf(ifile," TITLE=%[^\n]",title); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >lpo_format.c:86:5: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 86 | fscanf(ifile,"%*[ \t]"); > | ^~~~~~~~~~~~~~~~~~~~~~~ >lpo_format.c: In function âread_lpo_selectâ: >lpo_format.c:160:3: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 160 | fscanf(ifile,"VERSION=%s",version); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >lpo_format.c:161:3: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 161 | fscanf(ifile," NAME=%[^\n]",name); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >lpo_format.c:162:3: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 162 | fscanf(ifile," TITLE=%[^\n]",title); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >lpo_format.c:185:5: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 185 | fscanf(ifile,"%*[ \t]"); > | ^~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o create_seq.o create_seq.c >In file included from create_seq.c:3: >create_seq.c: In function âcreate_seqâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:212:5: note: in expansion of macro âCALLOCâ > 212 | CALLOC(memptr,BUF,ATYPE) } \ > | ^~~~~~ >create_seq.c:29:3: note: in expansion of macro âREBUFFâ > 29 | REBUFF(*p_seq,nseq,SEQUENCE_BUFFER_CHUNK,Sequence_T); /* ALLOCATE MEMORY*/ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:215:5: note: in expansion of macro âREALLOCâ > 215 | REALLOC(memptr,(NUM)+(BUF),ATYPE); \ > | ^~~~~~~ >create_seq.c:29:3: note: in expansion of macro âREBUFFâ > 29 | REBUFF(*p_seq,nseq,SEQUENCE_BUFFER_CHUNK,Sequence_T); /* ALLOCATE MEMORY*/ > | ^~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o remove_bundle.o remove_bundle.c >In file included from remove_bundle.c:4: >remove_bundle.c: In function âcompact_linksâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >remove_bundle.c:16:3: note: in expansion of macro âCALLOCâ > 16 | CALLOC(link,1,LPOLetterLink_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >remove_bundle.c: In function âcompact_sourcesâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >remove_bundle.c:59:3: note: in expansion of macro âCALLOCâ > 59 | CALLOC(source,1,LPOLetterSource_T); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >remove_bundle.c: In function âremove_bundleâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >remove_bundle.c:128:3: note: in expansion of macro âCALLOCâ > 128 | CALLOC(old_to_new,seq->length,int); /* CREATE MAPPING ARRAY */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o numeric_data.o numeric_data.c >In file included from ./lpo.h:6, > from numeric_data.c:3: >numeric_data.c: In function ânew_numeric_dataâ: >./default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >./default.h:212:5: note: in expansion of macro âCALLOCâ > 212 | CALLOC(memptr,BUF,ATYPE) } \ > | ^~~~~~ >numeric_data.c:18:3: note: in expansion of macro âREBUFFâ > 18 | REBUFF(source_seq->data,source_seq->ndata,NUMDATA_BUFFER_CHUNK,LPONumericData_T); > | ^~~~~~ >./default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >./default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >./default.h:215:5: note: in expansion of macro âREALLOCâ > 215 | REALLOC(memptr,(NUM)+(BUF),ATYPE); \ > | ^~~~~~~ >numeric_data.c:18:3: note: in expansion of macro âREBUFFâ > 18 | REBUFF(source_seq->data,source_seq->ndata,NUMDATA_BUFFER_CHUNK,LPONumericData_T); > | ^~~~~~ >./default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >./default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >numeric_data.c:25:3: note: in expansion of macro âCALLOCâ > 25 | CALLOC(data->data,source_seq->length,double); /* ALLOCATE THE ARRAY */ > | ^~~~~~ >./default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >numeric_data.c: In function âread_numeric_dataâ: >numeric_data.c:139:4: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > 139 | fscanf(ifile," %lf",data->data+j); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o stringptr.o stringptr.c >In file included from stringptr.c:2: >stringptr.c: In function âstringptr_cat_posâ: >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >stringptr.c:30:3: note: in expansion of macro âCALLOCâ > 30 | CALLOC(s2_temp,s2_len,char); /* ALLOCATE TEMP STORAGE */ > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:241:5: note: in expansion of macro âCALLOCâ > 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~ >stringptr.c:40:3: note: in expansion of macro âGETMEMâ > 40 | GETMEM(s1->p,total_len, > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:245:5: note: in expansion of macro âREALLOCâ > 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~~ >stringptr.c:40:3: note: in expansion of macro âGETMEMâ > 40 | GETMEM(s1->p,total_len, > | ^~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >stringptr.c: In function âstringptr_cpyâ: >default.h:147:22: warning: format â%dâ expects argument of type âintâ, but argument 6 has type âsize_tâ {aka âlong unsigned intâ} [-Wformat=] > 147 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 148 | __FILE__,__LINE__,STRINGIFY(memptr),(N)); \ > | ~~~ >default.h:147:22: note: in definition of macro âCALLOCâ > 147 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >stringptr.c:67:3: note: in expansion of macro âGETMEMâ > 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); > | ^~~~~~ >default.h:147:68: note: format string is defined here > 147 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ~^ > | | > | int > | %ld >default.h:154:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âsize_tâ {aka âlong unsigned intâ} [-Wformat=] > 154 | fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ >default.h:154:20: note: in definition of macro âCALLOCâ > 154 | fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >stringptr.c:67:3: note: in expansion of macro âGETMEMâ > 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); > | ^~~~~~ >default.h:154:49: note: format string is defined here > 154 | fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 3 has type âsize_tâ {aka âlong unsigned intâ} [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ >default.h:241:5: note: in expansion of macro âCALLOCâ > 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~ >stringptr.c:67:3: note: in expansion of macro âGETMEMâ > 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); > | ^~~~~~ >default.h:155:32: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:155:20: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:241:5: note: in expansion of macro âCALLOCâ > 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~ >stringptr.c:67:3: note: in expansion of macro âGETMEMâ > 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); > | ^~~~~~ >default.h:155:37: note: format string is defined here > 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:184:22: warning: format â%dâ expects argument of type âintâ, but argument 6 has type âsize_tâ {aka âlong unsigned intâ} [-Wformat=] > 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ > | ~~~~~ >default.h:184:22: note: in definition of macro âREALLOCâ > 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >stringptr.c:67:3: note: in expansion of macro âGETMEMâ > 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); > | ^~~~~~ >default.h:184:68: note: format string is defined here > 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 3 has type âsize_tâ {aka âlong unsigned intâ} [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ >default.h:245:5: note: in expansion of macro âREALLOCâ > 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~~ >stringptr.c:67:3: note: in expansion of macro âGETMEMâ > 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); > | ^~~~~~ >default.h:196:34: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >default.h:196:22: warning: format â%dâ expects argument of type âintâ, but argument 4 has type âlong unsigned intâ [-Wformat=] > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ > | | > | long unsigned int >default.h:245:5: note: in expansion of macro âREALLOCâ > 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ > | ^~~~~~~ >stringptr.c:67:3: note: in expansion of macro âGETMEMâ > 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); > | ^~~~~~ >default.h:196:39: note: format string is defined here > 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ > | ~^ > | | > | int > | %ld >rm -f liblpo.a >ar rc liblpo.a black_flag.o seq_util.o fasta_format.o msa_format.o align_lpo2.o align_lpo_po2.o buildup_lpo.o lpo.o heaviest_bundle.o lpo_format.o create_seq.o remove_bundle.o numeric_data.o stringptr.o >ranlib liblpo.a >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -o poa align_score.o main.o -lm liblpo.a >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: main.o:(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: main.o:(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(black_flag.o):(.data.rel.local+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(black_flag.o):(.data.rel.local+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(seq_util.o):(.bss+0x8): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(seq_util.o):(.bss+0x10): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(fasta_format.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(fasta_format.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(msa_format.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(msa_format.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(buildup_lpo.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(buildup_lpo.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(lpo.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(lpo.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(heaviest_bundle.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(heaviest_bundle.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(lpo_format.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(lpo_format.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(create_seq.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(create_seq.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(numeric_data.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(numeric_data.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(stringptr.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(stringptr.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(align_lpo_po2.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here >/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(align_lpo_po2.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here >collect2: error: ld returned 1 exit status >make: *** [Makefile:48: poa] Error 1 > * ERROR: sci-biology/poa-2-r1::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-biology/poa-2-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/poa-2-r1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-biology:poa-2-r1:20200128-210632.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/poa-2-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/poa-2-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/poa-2-r1/work/poaV2' > * S: '/var/tmp/portage/sci-biology/poa-2-r1/work/poaV2'
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