* Package: sci-biology/poa-2-r1 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking poaV2.tar.gz to /var/tmp/portage/sci-biology/poa-2-r1/work >>> Source unpacked in /var/tmp/portage/sci-biology/poa-2-r1/work >>> Preparing source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ... * Applying 2-respect-flags.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/poa-2-r1/work/poaV2 ... make -j1 CC=x86_64-pc-linux-gnu-gcc 'OPT_CFLAGS=-O2 -pipe -march=native -fno-common' poa x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o align_score.o align_score.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o main.o main.c In file included from lpo.h:6, from main.c:3: main.c: In function ‘main’: ./default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int main.c:183:3: note: in expansion of macro ‘CALLOC’ 183 | CALLOC (input_seqs, max_input_seqs, LPOSequence_T *); | ^~~~~~ ./default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld ./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int main.c:221:2: note: in expansion of macro ‘REALLOC’ 221 | REALLOC (input_seqs, max_input_seqs, LPOSequence_T *); | ^~~~~~~ ./default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld In file included from ./default.h:16, from lpo.h:6, from main.c:3: main.c:225:30: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘FILE *’ {aka ‘struct _IO_FILE *’} [-Wformat=] 225 | WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 | po_list_file),"$Revision: 1.2.2.9 $"); | ~~~~~~~~~~~~ | | | FILE * {aka struct _IO_FILE *} ./black_flag.h:212:10: note: in definition of macro ‘WARN_MSG’ 212 | (sprintf MESSAGE,\ | ^~~~~~~ main.c:225:59: note: format string is defined here 225 | WARN_MSG(USERR,(ERRTXT,"Error reading PO list file %s.\nExiting", | ~^ | | | char * In file included from lpo.h:6, from main.c:3: ./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int main.c:254:2: note: in expansion of macro ‘REALLOC’ 254 | REALLOC (input_seqs, max_input_seqs, LPOSequence_T *); | ^~~~~~~ ./default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o black_flag.o black_flag.c In file included from black_flag.c:4: black_flag.c: In function ‘black_flag_init_args’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int black_flag.c:109:3: note: in expansion of macro ‘CALLOC’ 109 | CALLOC(Program_name,len,char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o seq_util.o seq_util.c In file included from seq_util.c:2: seq_util.c: In function ‘read_score_matrix’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int seq_util.c:170:3: note: in expansion of macro ‘CALLOC’ 170 | CALLOC (m->gap_penalty_x, m->max_gap_length+2, LPOScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int seq_util.c:171:3: note: in expansion of macro ‘CALLOC’ 171 | CALLOC (m->gap_penalty_y, m->max_gap_length+2, LPOScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o fasta_format.o fasta_format.c fasta_format.c: In function ‘read_fasta’: fasta_format.c:48:2: warning: implicit declaration of function ‘stringptr_cat_pos’; did you mean ‘stringptr_cat’? [-Wimplicit-function-declaration] 48 | stringptr_cat_pos(&tmp_seq,line,&length); | ^~~~~~~~~~~~~~~~~ | stringptr_cat x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o msa_format.o msa_format.c In file included from msa_format.h:17, from msa_format.c:17: msa_format.c: In function ‘read_clustal’: default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:169:7: note: in expansion of macro ‘REALLOC’ 169 | REALLOC (seq_names, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:171:7: note: in expansion of macro ‘REALLOC’ 171 | REALLOC (seq_titles, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:174:7: note: in expansion of macro ‘REALLOC’ 174 | REALLOC (aln_mat, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:176:7: note: in expansion of macro ‘REALLOC’ 176 | REALLOC (aln_lengths, n_seqs, int); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ | ~~~~~ | | | size_t {aka long unsigned int} default.h:184:22: note: in definition of macro ‘REALLOC’ 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ default.h:184:68: note: format string is defined here 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ msa_format.c:185:5: note: in expansion of macro ‘REALLOC’ 185 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); | ^~~~~~~ default.h:196:34: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:185:5: note: in expansion of macro ‘REALLOC’ 185 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld msa_format.c: In function ‘read_pir’: default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:248:7: note: in expansion of macro ‘REALLOC’ 248 | REALLOC (seq_names, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:250:7: note: in expansion of macro ‘REALLOC’ 250 | REALLOC (seq_titles, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:252:7: note: in expansion of macro ‘REALLOC’ 252 | REALLOC (aln_mat, n_seqs, char *); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:254:7: note: in expansion of macro ‘REALLOC’ 254 | REALLOC (aln_lengths, n_seqs, int); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ | ~~~~~ default.h:184:22: note: in definition of macro ‘REALLOC’ 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ default.h:184:68: note: format string is defined here 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ msa_format.c:268:7: note: in expansion of macro ‘REALLOC’ 268 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); | ^~~~~~~ default.h:196:34: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:268:7: note: in expansion of macro ‘REALLOC’ 268 | REALLOC (aln_mat[curr_seq], aln_lengths[curr_seq] + strlen(aln), char); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld msa_format.c: In function ‘lpo_from_aln_mat’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:318:3: note: in expansion of macro ‘CALLOC’ 318 | CALLOC (column_ids, n_seqs+1, int *); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:319:3: note: in expansion of macro ‘CALLOC’ 319 | CALLOC (res_ids, n_seqs+1, int *); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:326:5: note: in expansion of macro ‘CALLOC’ 326 | CALLOC (column_ids[i], max_aln_length, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:327:5: note: in expansion of macro ‘CALLOC’ 327 | CALLOC (res_ids[i], max_aln_length, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:334:3: note: in expansion of macro ‘CALLOC’ 334 | CALLOC (consens_row, max_aln_length, char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:347:3: note: in expansion of macro ‘CALLOC’ 347 | CALLOC (lposeq, 1, LPOSequence_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:351:3: note: in expansion of macro ‘CALLOC’ 351 | CALLOC (lposeq->sequence, max_aln_length+1, char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:369:3: note: in expansion of macro ‘REALLOC’ 369 | REALLOC (lposeq->sequence, len+1, char); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:375:5: note: in expansion of macro ‘CALLOC’ 375 | CALLOC (curr_seq, 1, LPOSequence_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:380:5: note: in expansion of macro ‘CALLOC’ 380 | CALLOC (curr_seq->sequence, aln_lengths[i]+1, char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:398:5: note: in expansion of macro ‘REALLOC’ 398 | REALLOC (curr_seq->sequence, len+1, char); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld msa_format.c:404:5: warning: implicit declaration of function ‘build_seq_to_po_index’ [-Wimplicit-function-declaration] 404 | build_seq_to_po_index (lposeq); | ^~~~~~~~~~~~~~~~~~~~~ In file included from msa_format.h:17, from msa_format.c:17: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:406:5: note: in expansion of macro ‘CALLOC’ 406 | CALLOC (al_x, len, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:407:5: note: in expansion of macro ‘CALLOC’ 407 | CALLOC (al_y, lposeq->length, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld msa_format.c:428:5: warning: implicit declaration of function ‘fuse_ring_identities’ [-Wimplicit-function-declaration] 428 | fuse_ring_identities (lposeq->length, lposeq->letter, | ^~~~~~~~~~~~~~~~~~~~ In file included from msa_format.h:17, from msa_format.c:17: msa_format.c: In function ‘filter_sequence_set’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int msa_format.c:485:3: note: in expansion of macro ‘CALLOC’ 485 | CALLOC (keep_seq, n_seqs, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o align_lpo2.o align_lpo2.c In file included from align_lpo2.c:2: align_lpo2.c: In function ‘get_seq_left_and_final’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:60:3: note: in expansion of macro ‘CALLOC’ 60 | CALLOC (is_final_node_x, len_x, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:66:3: note: in expansion of macro ‘CALLOC’ 66 | CALLOC (x_left, len_x, LPOLetterLink_T *); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:70:7: note: in expansion of macro ‘CALLOC’ 70 | CALLOC (x_left[i], 1, LPOLetterLink_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld align_lpo2.c: In function ‘trace_back_lpo_alignment’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:96:3: note: in expansion of macro ‘CALLOC’ 96 | CALLOC (x_al, len_x, LPOLetterRef_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:97:3: note: in expansion of macro ‘CALLOC’ 97 | CALLOC (y_al, len_y, LPOLetterRef_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld align_lpo2.c: In function ‘align_lpo’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:185:3: note: in expansion of macro ‘CALLOC’ 185 | CALLOC (next_gap_array, max_gap_length + 2, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:186:3: note: in expansion of macro ‘CALLOC’ 186 | CALLOC (next_perp_gap_array, max_gap_length + 2, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:199:3: note: in expansion of macro ‘CALLOC’ 199 | CALLOC (move, len_y, DPMove_T *); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:201:5: note: in expansion of macro ‘CALLOC’ 201 | CALLOC (move[i], len_x, DPMove_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:204:3: note: in expansion of macro ‘CALLOC’ 204 | CALLOC (init_col_score, len_y+1, DPScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:207:3: note: in expansion of macro ‘CALLOC’ 207 | CALLOC (curr_score, len_x+1, DPScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo2.c:209:3: note: in expansion of macro ‘CALLOC’ 209 | CALLOC (prev_score, len_x+1, DPScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o align_lpo_po2.o align_lpo_po2.c In file included from align_lpo_po2.c:2: align_lpo_po2.c: In function ‘get_lpo_stats’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:41:3: note: in expansion of macro ‘CALLOC’ 41 | CALLOC (node_type, len, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:42:3: note: in expansion of macro ‘CALLOC’ 42 | CALLOC (refs_from_right, len, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:43:3: note: in expansion of macro ‘CALLOC’ 43 | CALLOC (tmp, len, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:44:3: note: in expansion of macro ‘CALLOC’ 44 | CALLOC (left_links, len, LPOLetterLink_T *); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:71:7: note: in expansion of macro ‘CALLOC’ 71 | CALLOC (left_links[i], 1, LPOLetterLink_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld align_lpo_po2.c: In function ‘trace_back_lpo_alignment’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:120:3: note: in expansion of macro ‘CALLOC’ 120 | CALLOC (x_al, len_x, LPOLetterRef_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:121:3: note: in expansion of macro ‘CALLOC’ 121 | CALLOC (y_al, len_y, LPOLetterRef_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld align_lpo_po2.c: In function ‘align_lpo_po’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:227:3: note: in expansion of macro ‘CALLOC’ 227 | CALLOC (next_gap_array, max_gap_length + 2, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:228:3: note: in expansion of macro ‘CALLOC’ 228 | CALLOC (next_perp_gap_array, max_gap_length + 2, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:254:3: note: in expansion of macro ‘CALLOC’ 254 | CALLOC (move, len_y, DPMove_T *); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:256:5: note: in expansion of macro ‘CALLOC’ 256 | CALLOC (move[i], len_x, DPMove_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:259:3: note: in expansion of macro ‘CALLOC’ 259 | CALLOC (init_col_score, len_y+1, DPScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:262:3: note: in expansion of macro ‘CALLOC’ 262 | CALLOC (score_rows, len_y+1, DPScore_T *); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:264:3: note: in expansion of macro ‘CALLOC’ 264 | CALLOC (score_rows[-1], len_x+1, DPScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int align_lpo_po2.c:312:5: note: in expansion of macro ‘CALLOC’ 312 | CALLOC (score_rows[i], len_x+1, DPScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld align_lpo_po2.c:438:44: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int’ [-Wformat=] 438 | fprintf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y); | ~~^ ~~~~~~~~~ | | | | long int int | %d align_lpo_po2.c:438:69: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 6 has type ‘int’ [-Wformat=] 438 | intf (stderr, "aligned (%d nodes, %ld edges) to (%d nodes, %ld edges): ", len_x, n_edges_x, len_y, n_edges_y); | ~~^ ~~~~~~~~~ | | | | long int int | %d x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o buildup_lpo.o buildup_lpo.c In file included from buildup_lpo.c:3: buildup_lpo.c: In function ‘clip_unaligned_ends’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:146:3: note: in expansion of macro ‘CALLOC’ 146 | CALLOC(temp,seq->length,LPOLetter_T); /* ALLOCATE NEW letter[] COPY */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld buildup_lpo.c: In function ‘read_seqpair_scorefile’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:327:3: note: in expansion of macro ‘CALLOC’ 327 | CALLOC (adj_score, nseq, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:330:3: note: in expansion of macro ‘CALLOC’ 330 | CALLOC (score_list, max_nscore, SeqPairScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:353:2: note: in expansion of macro ‘REALLOC’ 353 | REALLOC (score_list, max_nscore, SeqPairScore_T); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:374:2: note: in expansion of macro ‘REALLOC’ 374 | REALLOC (score_list, max_nscore, SeqPairScore_T); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:394:2: note: in expansion of macro ‘REALLOC’ 394 | REALLOC (score_list, max_nscore, SeqPairScore_T); | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld buildup_lpo.c: In function ‘buildup_progressive_lpo’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:445:3: note: in expansion of macro ‘CALLOC’ 445 | CALLOC(seq_cluster,nseq,int); /* MAPS SEQS (or CLUSTERS) TO CLUSTER THEY'RE IN */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:446:3: note: in expansion of macro ‘CALLOC’ 446 | CALLOC(seq_id_in_cluster,nseq,int); /* INDEXES SEQS (or CLUSTERS) WITHIN EACH CLUSTER */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:447:3: note: in expansion of macro ‘CALLOC’ 447 | CALLOC(cluster_size,nseq,int); /* COUNTS SEQS IN SAME CLUSTER (updated w/ merges) */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:448:3: note: in expansion of macro ‘CALLOC’ 448 | CALLOC(initial_nseq,nseq,int); /* COUNTS SEQS INITIALLY IN EACH CLUSTER (not updated w/ merges) */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int buildup_lpo.c:538:5: note: in expansion of macro ‘CALLOC’ 538 | CALLOC (perm, nseq_tot, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o lpo.o lpo.c In file included from lpo.c:3: lpo.c: In function ‘lpo_init’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:15:3: note: in expansion of macro ‘CALLOC’ 15 | CALLOC(seq->letter,seq->length,LPOLetter_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘build_seq_to_po_index’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:157:5: note: in expansion of macro ‘CALLOC’ 157 | CALLOC(seq->source_seq[i].seq_to_po,seq->source_seq[i].length,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:158:5: note: in expansion of macro ‘CALLOC’ 158 | CALLOC(seq->source_seq[i].po_to_seq,seq->length,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:159:5: note: in expansion of macro ‘CALLOC’ 159 | CALLOC(seq->source_seq[i].sequence,seq->source_seq[i].length+1,char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘save_lpo_source’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:212:5: note: in expansion of macro ‘CALLOC’ 212 | CALLOC(memptr,BUF,ATYPE) } \ | ^~~~~~ lpo.c:189:3: note: in expansion of macro ‘REBUFF’ 189 | REBUFF(seq->source_seq,seq->nsource_seq,SOURCE_SEQ_BUFFER_CHUNK, | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:215:5: note: in expansion of macro ‘REALLOC’ 215 | REALLOC(memptr,(NUM)+(BUF),ATYPE); \ | ^~~~~~~ lpo.c:189:3: note: in expansion of macro ‘REBUFF’ 189 | REBUFF(seq->source_seq,seq->nsource_seq,SOURCE_SEQ_BUFFER_CHUNK, | ^~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘save_lpo_source_list’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:213:3: note: in expansion of macro ‘CALLOC’ 213 | CALLOC(list,nsource_seq,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘add_lpo_link’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:238:3: note: in expansion of macro ‘CALLOC’ 238 | CALLOC(list->more,1,LPOLetterLink_T); /* ADD ENTRY TO LINKED LIST */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘add_lpo_sources’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:252:7: note: in expansion of macro ‘CALLOC’ 252 | CALLOC(new_s->more,1,LPOLetterSource_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘reindex_lpo_source_seqs’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:270:3: note: in expansion of macro ‘CALLOC’ 270 | CALLOC (map, len, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:271:3: note: in expansion of macro ‘CALLOC’ 271 | CALLOC (invmap, len, int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘reindex_lpo_fusion’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:427:3: note: in expansion of macro ‘CALLOC’ 427 | CALLOC(do_fuse,len_y,char); /* MARK POSITIONS TO FUSE seq_y TO seq_x */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘copy_fuse_lpo_remap’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:500:3: note: in expansion of macro ‘CALLOC’ 500 | CALLOC(new_seq,1,LPOSequence_T); /* CREATE A NEW HOLDER */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:501:3: note: in expansion of macro ‘CALLOC’ 501 | CALLOC(new_x,len_x,LPOLetterRef_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:502:3: note: in expansion of macro ‘CALLOC’ 502 | CALLOC(new_y,len_y,LPOLetterRef_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:505:3: note: in expansion of macro ‘CALLOC’ 505 | CALLOC(new_lpo,new_len,LPOLetter_T); /* ALLOCATE NEW LINEARIZED PO */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘copy_lpo’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:564:3: note: in expansion of macro ‘CALLOC’ 564 | CALLOC(x_to_y,holder_x->length,LPOLetterRef_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo.c: In function ‘fuse_lpo_remap’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:618:3: note: in expansion of macro ‘CALLOC’ 618 | CALLOC(new_x,len_x,LPOLetterRef_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:619:3: note: in expansion of macro ‘CALLOC’ 619 | CALLOC(new_y,len_y,LPOLetterRef_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo.c:622:3: note: in expansion of macro ‘REALLOC’ 622 | REALLOC(seq_x,new_len,LPOLetter_T); /* EXPAND seq_x TO HOLD FUSED LPO */ | ^~~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o heaviest_bundle.o heaviest_bundle.c In file included from heaviest_bundle.c:3: heaviest_bundle.c: In function ‘heaviest_bundle’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int heaviest_bundle.c:27:3: note: in expansion of macro ‘CALLOC’ 27 | CALLOC(path,len,LPOLetterRef_T); /* GET MEMORY FOR DYNAMIC PROGRAMMING */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int heaviest_bundle.c:28:3: note: in expansion of macro ‘CALLOC’ 28 | CALLOC(score,len,LPOScore_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int heaviest_bundle.c:29:3: note: in expansion of macro ‘CALLOC’ 29 | CALLOC(contains_pos,nsource_seq,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int heaviest_bundle.c:67:3: note: in expansion of macro ‘CALLOC’ 67 | CALLOC(best_path,len,LPOLetterRef_T); /* MEMORY FOR STORING BEST PATH */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld heaviest_bundle.c: In function ‘assign_sequence_bundle_id’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int heaviest_bundle.c:90:3: note: in expansion of macro ‘CALLOC’ 90 | CALLOC(bundle_count,seq->nsource_seq,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o lpo_format.o lpo_format.c In file included from lpo_format.c:3: lpo_format.c: In function ‘read_lpo’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:60:3: note: in expansion of macro ‘CALLOC’ 60 | CALLOC(seq,1,LPOSequence_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:71:3: note: in expansion of macro ‘CALLOC’ 71 | CALLOC(seq->letter,length,LPOLetter_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:241:5: note: in expansion of macro ‘CALLOC’ 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~ lpo_format.c:72:3: note: in expansion of macro ‘GETMEM’ 72 | GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:245:5: note: in expansion of macro ‘REALLOC’ 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~~ lpo_format.c:72:3: note: in expansion of macro ‘GETMEM’ 72 | GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); | ^~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:73:3: note: in expansion of macro ‘CALLOC’ 73 | CALLOC(pos_count,nsource_seq,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo_format.c: In function ‘read_lpo_select’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:159:3: note: in expansion of macro ‘CALLOC’ 159 | CALLOC(seq,1,LPOSequence_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:170:3: note: in expansion of macro ‘CALLOC’ 170 | CALLOC(seq->letter,length,LPOLetter_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:241:5: note: in expansion of macro ‘CALLOC’ 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~ lpo_format.c:171:3: note: in expansion of macro ‘GETMEM’ 171 | GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:245:5: note: in expansion of macro ‘REALLOC’ 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~~ lpo_format.c:171:3: note: in expansion of macro ‘GETMEM’ 171 | GETMEM(seq->source_seq,nsource_seq,last_alloc,SOURCE_SEQ_BUFFER_CHUNK,LPOSourceInfo_T); | ^~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:172:3: note: in expansion of macro ‘CALLOC’ 172 | CALLOC(pos_count,nsource_seq,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:196:3: note: in expansion of macro ‘CALLOC’ 196 | CALLOC(iseq_compact,nsource_seq,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:197:3: note: in expansion of macro ‘CALLOC’ 197 | CALLOC(last_pos,nsource_seq,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:198:3: note: in expansion of macro ‘CALLOC’ 198 | CALLOC(match_pos,nsource_seq,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:229:3: note: in expansion of macro ‘CALLOC’ 229 | CALLOC(link_list,seq->length,int); /*TEMPORARY DATA FOR COMPACTION MAPPING */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:230:3: note: in expansion of macro ‘CALLOC’ 230 | CALLOC(pos_compact,seq->length,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:231:3: note: in expansion of macro ‘CALLOC’ 231 | CALLOC(ring_old,seq->length,int); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo_format.c: In function ‘xlate_lpo_to_al’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:353:3: note: in expansion of macro ‘CALLOC’ 353 | CALLOC(seq_pos,seq->nsource_seq,char *); /* ALLOCATE MAP ARRAY*/ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:354:3: note: in expansion of macro ‘CALLOC’ 354 | CALLOC(p,seq->nsource_seq*nring,char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int lpo_format.c:374:5: note: in expansion of macro ‘CALLOC’ 374 | CALLOC(include_in_save,nring,char); /* BLANK FLAGS: WHAT RINGS TO SHOW*/ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld lpo_format.c: In function ‘read_lpo’: lpo_format.c:61:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 61 | fscanf(ifile,"VERSION=%s",version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:62:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 62 | fscanf(ifile," NAME=%[^\n]",name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:63:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 63 | fscanf(ifile," TITLE=%[^\n]",title); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:86:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 86 | fscanf(ifile,"%*[ \t]"); | ^~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c: In function ‘read_lpo_select’: lpo_format.c:160:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 160 | fscanf(ifile,"VERSION=%s",version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:161:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 161 | fscanf(ifile," NAME=%[^\n]",name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:162:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 162 | fscanf(ifile," TITLE=%[^\n]",title); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lpo_format.c:185:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 185 | fscanf(ifile,"%*[ \t]"); | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o create_seq.o create_seq.c In file included from create_seq.c:3: create_seq.c: In function ‘create_seq’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:212:5: note: in expansion of macro ‘CALLOC’ 212 | CALLOC(memptr,BUF,ATYPE) } \ | ^~~~~~ create_seq.c:29:3: note: in expansion of macro ‘REBUFF’ 29 | REBUFF(*p_seq,nseq,SEQUENCE_BUFFER_CHUNK,Sequence_T); /* ALLOCATE MEMORY*/ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:215:5: note: in expansion of macro ‘REALLOC’ 215 | REALLOC(memptr,(NUM)+(BUF),ATYPE); \ | ^~~~~~~ create_seq.c:29:3: note: in expansion of macro ‘REBUFF’ 29 | REBUFF(*p_seq,nseq,SEQUENCE_BUFFER_CHUNK,Sequence_T); /* ALLOCATE MEMORY*/ | ^~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o remove_bundle.o remove_bundle.c In file included from remove_bundle.c:4: remove_bundle.c: In function ‘compact_links’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int remove_bundle.c:16:3: note: in expansion of macro ‘CALLOC’ 16 | CALLOC(link,1,LPOLetterLink_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld remove_bundle.c: In function ‘compact_sources’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int remove_bundle.c:59:3: note: in expansion of macro ‘CALLOC’ 59 | CALLOC(source,1,LPOLetterSource_T); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld remove_bundle.c: In function ‘remove_bundle’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int remove_bundle.c:128:3: note: in expansion of macro ‘CALLOC’ 128 | CALLOC(old_to_new,seq->length,int); /* CREATE MAPPING ARRAY */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o numeric_data.o numeric_data.c In file included from ./lpo.h:6, from numeric_data.c:3: numeric_data.c: In function ‘new_numeric_data’: ./default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int ./default.h:212:5: note: in expansion of macro ‘CALLOC’ 212 | CALLOC(memptr,BUF,ATYPE) } \ | ^~~~~~ numeric_data.c:18:3: note: in expansion of macro ‘REBUFF’ 18 | REBUFF(source_seq->data,source_seq->ndata,NUMDATA_BUFFER_CHUNK,LPONumericData_T); | ^~~~~~ ./default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld ./default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int ./default.h:215:5: note: in expansion of macro ‘REALLOC’ 215 | REALLOC(memptr,(NUM)+(BUF),ATYPE); \ | ^~~~~~~ numeric_data.c:18:3: note: in expansion of macro ‘REBUFF’ 18 | REBUFF(source_seq->data,source_seq->ndata,NUMDATA_BUFFER_CHUNK,LPONumericData_T); | ^~~~~~ ./default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld ./default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int numeric_data.c:25:3: note: in expansion of macro ‘CALLOC’ 25 | CALLOC(data->data,source_seq->length,double); /* ALLOCATE THE ARRAY */ | ^~~~~~ ./default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld numeric_data.c: In function ‘read_numeric_data’: numeric_data.c:139:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 139 | fscanf(ifile," %lf",data->data+j); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I. -c -o stringptr.o stringptr.c In file included from stringptr.c:2: stringptr.c: In function ‘stringptr_cat_pos’: default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int stringptr.c:30:3: note: in expansion of macro ‘CALLOC’ 30 | CALLOC(s2_temp,s2_len,char); /* ALLOCATE TEMP STORAGE */ | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:241:5: note: in expansion of macro ‘CALLOC’ 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~ stringptr.c:40:3: note: in expansion of macro ‘GETMEM’ 40 | GETMEM(s1->p,total_len, | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:245:5: note: in expansion of macro ‘REALLOC’ 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~~ stringptr.c:40:3: note: in expansion of macro ‘GETMEM’ 40 | GETMEM(s1->p,total_len, | ^~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld stringptr.c: In function ‘stringptr_cpy’: default.h:147:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 147 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | __FILE__,__LINE__,STRINGIFY(memptr),(N)); \ | ~~~ default.h:147:22: note: in definition of macro ‘CALLOC’ 147 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stringptr.c:67:3: note: in expansion of macro ‘GETMEM’ 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); | ^~~~~~ default.h:147:68: note: format string is defined here 147 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ~^ | | | int | %ld default.h:154:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 154 | fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ default.h:154:20: note: in definition of macro ‘CALLOC’ 154 | fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stringptr.c:67:3: note: in expansion of macro ‘GETMEM’ 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); | ^~~~~~ default.h:154:49: note: format string is defined here 154 | fprintf(stderr,"Unable to meet request: %s[%d]\n",STRINGIFY(memptr),(N)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~ default.h:241:5: note: in expansion of macro ‘CALLOC’ 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~ stringptr.c:67:3: note: in expansion of macro ‘GETMEM’ 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); | ^~~~~~ default.h:155:32: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:155:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:241:5: note: in expansion of macro ‘CALLOC’ 241 | CALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~ stringptr.c:67:3: note: in expansion of macro ‘GETMEM’ 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); | ^~~~~~ default.h:155:37: note: format string is defined here 155 | fprintf(stderr,"requested %d x %d bytes \n",(N),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:184:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __FILE__,__LINE__,STRINGIFY(memptr),(NUM)); \ | ~~~~~ default.h:184:22: note: in definition of macro ‘REALLOC’ 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stringptr.c:67:3: note: in expansion of macro ‘GETMEM’ 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); | ^~~~~~ default.h:184:68: note: format string is defined here 184 | fprintf(stderr,"%s, line %d: *** invalid memory request: %s[%d].\n",\ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ default.h:245:5: note: in expansion of macro ‘REALLOC’ 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~~ stringptr.c:67:3: note: in expansion of macro ‘GETMEM’ 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); | ^~~~~~ default.h:196:34: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld default.h:196:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=] 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | long unsigned int default.h:245:5: note: in expansion of macro ‘REALLOC’ 245 | REALLOC(memptr,((NUM)+1)-((NUM)+1)%(BUF)+(BUF),TYPE);\ | ^~~~~~~ stringptr.c:67:3: note: in expansion of macro ‘GETMEM’ 67 | GETMEM(s1->p,strlen(s2)+1,s1->last_alloc,STRINGPTR_BUFFER_CHUNK,char); | ^~~~~~ default.h:196:39: note: format string is defined here 196 | fprintf(stderr,"requested %d x %d bytes \n",(NUM),sizeof(ATYPE)); \ | ~^ | | | int | %ld rm -f liblpo.a ar rc liblpo.a black_flag.o seq_util.o fasta_format.o msa_format.o align_lpo2.o align_lpo_po2.o buildup_lpo.o lpo.o heaviest_bundle.o lpo_format.o create_seq.o remove_bundle.o numeric_data.o stringptr.o ranlib liblpo.a x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -o poa align_score.o main.o -lm liblpo.a /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: main.o:(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: main.o:(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(black_flag.o):(.data.rel.local+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(black_flag.o):(.data.rel.local+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(seq_util.o):(.bss+0x8): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(seq_util.o):(.bss+0x10): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(fasta_format.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(fasta_format.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(msa_format.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(msa_format.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(buildup_lpo.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(buildup_lpo.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(lpo.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(lpo.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(heaviest_bundle.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(heaviest_bundle.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(lpo_format.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(lpo_format.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(create_seq.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(create_seq.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(numeric_data.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(numeric_data.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(stringptr.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(stringptr.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(align_lpo_po2.o):(.bss+0x0): multiple definition of `Program_version'; align_score.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: liblpo.a(align_lpo_po2.o):(.bss+0x8): multiple definition of `Program_name'; align_score.o:(.bss+0x8): first defined here collect2: error: ld returned 1 exit status make: *** [Makefile:48: poa] Error 1 * ERROR: sci-biology/poa-2-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-biology/poa-2-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/poa-2-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:poa-2-r1:20200128-210632.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/poa-2-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/poa-2-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/poa-2-r1/work/poaV2' * S: '/var/tmp/portage/sci-biology/poa-2-r1/work/poaV2'