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Gentoo's Bugzilla – Attachment 505752 Details for
Bug 638496
sci-biology/wgs-assembler-7.0-r1 : uidserver_common.h:17:10: fatal error: rpc/types.h: No such file or directory
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sci-biology:wgs-assembler-7.0-r1:20171122-124457.log
sci-biology:wgs-assembler-7.0-r1:20171122-124457.log (text/plain), 607.13 KB, created by
Toralf Förster
on 2017-11-22 18:17:26 UTC
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hide
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Description:
sci-biology:wgs-assembler-7.0-r1:20171122-124457.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2017-11-22 18:17:26 UTC
Size:
607.13 KB
patch
obsolete
> * Package: sci-biology/wgs-assembler-7.0-r1 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking wgs-7.0.tar.bz2 to /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work >>>> Source unpacked in /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work >>>> Preparing source in /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0 ... > * Applying wgs-assembler-7.0-build.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0 ... >Testing '/usr/include/python2.6' >Testing '/usr/include/python2.5' >Testing '/usr/include/python2.4' >Testing '/usr/include/python2.3' >Testing '/usr/include/python2.2' >Testing '/usr/local/include/python2.6' >Testing '/usr/local/include/python2.5' >Testing '/usr/local/include/python2.4' >Testing '/usr/local/include/python2.3' >Testing '/usr/local/include/python2.2' >Testing '/System/Library/Frameworks/Python.framework/Versions/2.3/include/python2.3' >Testing '/System/Library/Frameworks/Python.framework/Versions/2.4/include/python2.4' >Testing '/System/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5' >Testing '/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6' >Testing '/usr/local/packages/python/include/python2.6' >Testing '/usr/local/packages/python/include/python2.5' >Testing '/usr/local/packages/python/include/python2.4' >Pyhton executable found in '/usr/bin/python' >WARNING: Python development environment not found. Will not build ATAC. >Configured. >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0 ... >make -j1 -C kmer -j1 install >make: Entering directory '/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer' >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/sfx.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/list.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/hash.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/except.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/dict.c.d >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.c >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.c: In function âmtRandomGaussianâ: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.c:166:34: warning: variable ây2â set but not used [-Wunused-but-set-variable] > double x1=0, x2=0, w=0, y1=0, y2=0; > ^~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar-test.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar-test.c >x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar-test /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar-test.o -pthread -ldl -lm -lbz2 >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar-test | diff - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.out > /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/diffs 2>&1 >if test -s /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/diffs ; then echo 'MT19937: TEST FAILED'; else echo 'MT19937: Test Passed'; fi >MT19937: Test Passed >touch /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/test.c >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar-test | diff - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.out >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/test.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/speedCounter.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/intervalList.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/fibonacciNumbers.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/qsort_mt.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/palloc.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/md5.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/file.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/reversecomplement.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/halign.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-colorspace.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-acgtspace.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet.c.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/percentCovered.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C.d >making /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-fasta.C.d >making meryl/simple.C.d >making meryl/compare-counts.C.d >making meryl/maskMers.C.d >making meryl/mapMers-depth.C.d >making meryl/mapMers.C.d >making meryl/asmMerQC.C.d >making meryl/meryl.C.d >making meryl/unaryOp.C.d >making meryl/merge.C.d >making meryl/estimate.C.d >making meryl/dump.C.d >making meryl/build-threads.C.d >making meryl/build.C.d >making meryl/binaryOp.C.d >making meryl/args.C.d >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/meryl.o -c meryl/meryl.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/meryl.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/args.o -c meryl/args.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/args.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/args.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/args.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/args.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/args.C:26:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "writeString()-- Failed to write string of length "u32bitFMT": %s\n", len, strerror(errno)); > ^ >meryl/args.C: In function âchar* readString(FILE*)â: >meryl/args.C:40:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&len, sizeof(u32bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >meryl/args.C:50:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(str, sizeof(char), len, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ >meryl/args.C: In constructor âmerylArgs::merylArgs(const char*)â: >meryl/args.C:513:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(magic, sizeof(char), 16, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >meryl/args.C:521:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(this, sizeof(merylArgs), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/binaryOp.o -c meryl/binaryOp.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/meryl.H:4, > from meryl/binaryOp.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/binaryOp.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/binaryOp.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/binaryOp.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/binaryOp.C:43:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR - mersize of '%s' is "u32bitFMT"\n", args->mergeFiles[0], A->merSize()); > ^ >meryl/binaryOp.C:44:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR - mersize of '%s' is "u32bitFMT"\n", args->mergeFiles[1], B->merSize()); > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/build.o -c meryl/build.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/build.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/build.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/build.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/build.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/build.C:152:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(cmd, "qsub -t 1-"u64bitFMT" -cwd -b n -j y -o %s-count-\\$TASK_ID.err %s -N mc%s %s-count.sh", > ^ >meryl/build.C:155:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(cmd, "qsub -t 1-"u64bitFMT" -cwd -b n -j y -o %s-count-\\$TASK_ID.err -N mc%s %s-count.sh", > ^ >meryl/build.C:247:2: warning: #warning not submitting prepareBatch to grid [-Wcpp] > #warning not submitting prepareBatch to grid > ^~~~~~~ >meryl/build.C:276:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Have a memory limit: mersPerBatch="u64bitFMT" segmentLimit="u64bitFMT"\n", args->mersPerBatch, args->segmentLimit); > ^ >meryl/build.C:276:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Have a memory limit: mersPerBatch="u64bitFMT" segmentLimit="u64bitFMT"\n", args->mersPerBatch, args->segmentLimit); > ^ >meryl/build.C:280:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Have a segment limit: mersPerBatch="u64bitFMT" segmentLimit="u64bitFMT"\n", args->mersPerBatch, args->segmentLimit); > ^ >meryl/build.C:280:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Have a segment limit: mersPerBatch="u64bitFMT" segmentLimit="u64bitFMT"\n", args->mersPerBatch, args->segmentLimit); > ^ >meryl/build.C:285:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Have NO LIMITS!: mersPerBatch="u64bitFMT" segmentLimit="u64bitFMT"\n", args->mersPerBatch, args->segmentLimit); > ^ >meryl/build.C:285:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Have NO LIMITS!: mersPerBatch="u64bitFMT" segmentLimit="u64bitFMT"\n", args->mersPerBatch, args->segmentLimit); > ^ >meryl/build.C:290:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "basesPerBatch = "u64bitFMT"\n", args->basesPerBatch); > ^ >meryl/build.C:310:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " numMersActual = "u64bitFMT"\n", args->numMersActual); > ^ >meryl/build.C:311:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " mersPerBatch = "u64bitFMT"\n", args->mersPerBatch); > ^ >meryl/build.C:312:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " basesPerBatch = "u64bitFMT"\n", args->basesPerBatch); > ^ >meryl/build.C:313:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " numBuckets = "u64bitFMT" ("u32bitFMT" bits)\n", args->numBuckets, args->numBuckets_log2); > ^ >meryl/build.C:313:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " numBuckets = "u64bitFMT" ("u32bitFMT" bits)\n", args->numBuckets, args->numBuckets_log2); > ^ >meryl/build.C:314:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " bucketPointerWidth = "u32bitFMT"\n", args->bucketPointerWidth); > ^ >meryl/build.C:315:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " merDataWidth = "u32bitFMT"\n", args->merDataWidth); > ^ >meryl/build.C:322:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Computing "u64bitFMT" segments using "u64bitFMT"MB memory each.\n", > ^ >meryl/build.C:322:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Computing "u64bitFMT" segments using "u64bitFMT"MB memory each.\n", > ^ >meryl/build.C:325:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Computing "u64bitFMT" segments using AS MUCH MEMORY AS NEEDED.\n", > ^ >meryl/build.C:327:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " numMersActual = "u64bitFMT"\n", args->numMersActual); > ^ >meryl/build.C:328:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " mersPerBatch = "u64bitFMT"\n", args->mersPerBatch); > ^ >meryl/build.C:329:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " basesPerBatch = "u64bitFMT"\n", args->basesPerBatch); > ^ >meryl/build.C:330:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " numBuckets = "u64bitFMT" ("u32bitFMT" bits)\n", args->numBuckets, args->numBuckets_log2); > ^ >meryl/build.C:330:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " numBuckets = "u64bitFMT" ("u32bitFMT" bits)\n", args->numBuckets, args->numBuckets_log2); > ^ >meryl/build.C:331:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " bucketPointerWidth = "u32bitFMT"\n", args->bucketPointerWidth); > ^ >meryl/build.C:332:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " merDataWidth = "u32bitFMT"\n", args->merDataWidth); > ^ >meryl/build.C:355:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(filename, "%s.batch"u64bitFMT".mcdat", args->outputFile, segment); > ^ >meryl/build.C:359:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Found result for batch "u64bitFMT" in %s.\n", segment, filename); > ^ >meryl/build.C:365:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Computing segment "u64bitFMT" of "u64bitFMT".\n", segment+1, args->segmentLimit); > ^ >meryl/build.C:365:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Computing segment "u64bitFMT" of "u64bitFMT".\n", segment+1, args->segmentLimit); > ^ >meryl/build.C:378:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocating "u64bitFMT"MB for mer storage ("u32bitFMT" bits wide).\n", > ^ >meryl/build.C:378:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocating "u64bitFMT"MB for mer storage ("u32bitFMT" bits wide).\n", > ^ >meryl/build.C:397:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocating "u64bitFMT"MB for mer position storage.\n", > ^ >meryl/build.C:403:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocating "u64bitFMT"MB for bucket pointer table ("u32bitFMT" bits wide).\n", > ^ >meryl/build.C:403:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocating "u64bitFMT"MB for bucket pointer table ("u32bitFMT" bits wide).\n", > ^ >meryl/build.C:409:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocating "u64bitFMT"MB for counting the size of each bucket.\n", args->numBuckets >> 18); > ^ >meryl/build.C:490:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Releasing "u64bitFMT"MB from counting the size of each bucket.\n", args->numBuckets >> 18); > ^ >meryl/build.C:545:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(batchOutputFile, "%s.batch"u64bitFMT, args->outputFile, segment); > ^ >meryl/build.C:565:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: In segment "u64bitFMT"\n", segment); > ^ >meryl/build.C:566:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: Bucket "u64bitFMT" (out of "u64bitFMT") ends before it starts!\n", > ^ >meryl/build.C:566:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: Bucket "u64bitFMT" (out of "u64bitFMT") ends before it starts!\n", > ^ >meryl/build.C:568:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: start="u64bitFMT"\n", st); > ^ >meryl/build.C:569:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: end ="u64bitFMT"\n", ed); > ^ >meryl/build.C:574:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: In segment "u64bitFMT"\n", segment); > ^ >meryl/build.C:575:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: Bucket "u64bitFMT" (out of "u64bitFMT") is HUGE!\n", > ^ >meryl/build.C:575:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: Bucket "u64bitFMT" (out of "u64bitFMT") is HUGE!\n", > ^ >meryl/build.C:577:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: start="u64bitFMT"\n", st); > ^ >meryl/build.C:578:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: end ="u64bitFMT"\n", ed); > ^ >meryl/build.C:680:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Segment "u64bitFMT" finished.\n", segment); > ^ >meryl/build.C:718:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s -countbatch "u64bitFMT" -o %s\n", args->execName, s, args->outputFile); > ^ >meryl/build.C:796:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(argv[argc], "%s.batch"u32bitFMT, args->outputFile, i); > ^ >meryl/build.C:820:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(filename, "%s.batch"u32bitFMT".mcidx", args->outputFile, i); > ^ >meryl/build.C:822:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(filename, "%s.batch"u32bitFMT".mcdat", args->outputFile, i); > ^ >meryl/build.C:824:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(filename, "%s.batch"u32bitFMT".mcpos", args->outputFile, i); > ^ >meryl/build.C: In function âvoid runSegment(merylArgs*, u64bit)â: >meryl/build.C:425:8: warning: unused variable âmstringâ [-Wunused-variable] > char mstring[256]; > ^~~~~~~ >meryl/build.C: In function âvoid build(merylArgs*)â: >meryl/build.C:782:41: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > arga[argc] = false; argv[argc++] = "meryl-build-merge"; > ^~~~~~~~~~~~~~~~~~~ >meryl/build.C:783:41: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > arga[argc] = false; argv[argc++] = "-M"; > ^~~~ >meryl/build.C:784:41: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > arga[argc] = false; argv[argc++] = "merge"; > ^~~~~~~ >meryl/build.C:788:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > argv[argc++] = "-v"; > ^~~~ >meryl/build.C:793:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > argv[argc++] = "-s"; > ^~~~ >meryl/build.C:800:41: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > arga[argc] = false; argv[argc++] = "-o"; > ^~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/build-threads.o -c meryl/build-threads.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/build-threads.C:7: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/build-threads.C:7: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/build-threads.C:7: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/build-threads.C:7: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/dump.o -c meryl/dump.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/meryl.H:4, > from meryl/dump.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/dump.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/dump.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/dump.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/dump.C:17:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, ">"u64bitFMT"\n%s\n", > ^ >meryl/dump.C:35:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, ">"u64bitFMT, M->theCount()); > ^ >meryl/dump.C:37:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, " "u32bitFMT, M->getPosition(i)); > ^ >meryl/dump.C:50:2: warning: #warning make this a test [-Wcpp] > #warning make this a test > ^~~~~~~ >meryl/dump.C:72:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Found "u64bitFMT" mers.\n", M->numberOfTotalMers()); > ^ >meryl/dump.C:73:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Found "u64bitFMT" distinct mers.\n", M->numberOfDistinctMers()); > ^ >meryl/dump.C:74:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Found "u64bitFMT" unique mers.\n", M->numberOfUniqueMers()); > ^ >meryl/dump.C:87:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Found "u64bitFMT" mers.\n", M->numberOfTotalMers()); > ^ >meryl/dump.C:88:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Found "u64bitFMT" distinct mers.\n", M->numberOfDistinctMers()); > ^ >meryl/dump.C:89:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Found "u64bitFMT" unique mers.\n", M->numberOfUniqueMers()); > ^ >meryl/dump.C:91:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Largest mercount is "u64bitFMT"; "u64bitFMT" mers are too big for histogram.\n", > ^ >meryl/dump.C:91:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Largest mercount is "u64bitFMT"; "u64bitFMT" mers are too big for histogram.\n", > ^ >meryl/dump.C:101:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, u32bitFMT"\t"u64bitFMT"\t%.4f\t%.4f\n", > ^ >meryl/dump.C:148:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, u32bitFMT"\t"u64bitFMT"\n", d, hist[d]); > ^ >meryl/dump.C:151:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "huge\t"u64bitFMT"\n", histHuge); > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/estimate.o -c meryl/estimate.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/estimate.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/estimate.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/estimate.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/estimate.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/estimate.C:102:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Can fit "u64bitFMT" mers into table with prefix of "u64bitFMT" bits, using %8.3fMB (%8.3fMB for positions)\n", > ^ >meryl/estimate.C:102:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Can fit "u64bitFMT" mers into table with prefix of "u64bitFMT" bits, using %8.3fMB (%8.3fMB for positions)\n", > ^ >meryl/estimate.C:180:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, u64bitFMT" "u32bitFMT"-mers can be computed using "u64bitFMT"MB memory.\n", > ^ >meryl/estimate.C:180:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, u64bitFMT" "u32bitFMT"-mers can be computed using "u64bitFMT"MB memory.\n", > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/merge.o -c meryl/merge.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/meryl.H:4, > from meryl/merge.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/merge.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/merge.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/merge.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/merge.C:14:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR - must have at least two databases (you gave "u32bitFMT")!\n", args->mergeFilesLen); > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/unaryOp.o -c meryl/unaryOp.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/meryl.H:4, > from meryl/unaryOp.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/unaryOp.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/unaryOp.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/meryl.H:4, > from meryl/unaryOp.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >rm -f meryl/libmerylguts.a && ar ruvs meryl/libmerylguts.a meryl/args.o meryl/binaryOp.o meryl/build.o meryl/build-threads.o meryl/dump.o meryl/estimate.o meryl/merge.o meryl/unaryOp.o >ar: creating meryl/libmerylguts.a >a - meryl/args.o >a - meryl/binaryOp.o >a - meryl/build.o >a - meryl/build-threads.o >a - meryl/dump.o >a - meryl/estimate.o >a - meryl/merge.o >a - meryl/unaryOp.o >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:72:2: warning: #warning not checking pmagic [-Wcpp] > #warning not checking pmagic > ^~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:134:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "merylStreamReader()-- ERROR: User requested mersize "u32bitFMT" but '%s' is mersize "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:134:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > err, "merylStreamReader()-- ERROR: User requested mersize "u32bitFMT" but '%s' is mersize "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:6:24: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *ImagicV = "merylStreamIv03\n"; > ^~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:7:24: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *ImagicX = "merylStreamIvXX\n"; > ^~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:8:24: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *DmagicV = "merylStreamDv03\n"; > ^~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:9:24: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *DmagicX = "merylStreamDvXX\n"; > ^~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:10:24: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *PmagicV = "merylStreamPv03\n"; > ^~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:11:24: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *PmagicX = "merylStreamPvXX\n"; > ^~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C: In constructor âmerylStreamReader::merylStreamReader(const char*, u32bit)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.C:42:11: warning: variable âPmagicâ set but not used [-Wunused-but-set-variable] > char Pmagic[16] = {0}; > ^~~~~~ >rm -f /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a && ar ruvs /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.o >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:151:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "fastaFile::getSequence(full)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:151:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "fastaFile::getSequence(full)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:252:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "fastaFile::getSequence(part)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:252:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "fastaFile::getSequence(part)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C: In member function âvoid fastaFile::loadIndex(char*)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:355:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_header, sizeof(fastaFileHeader), 1, I); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:375:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_index, sizeof(fastaFileIndex), _header._numberOfSequences, I); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.C:376:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_names, sizeof(char), _header._namesLength, I); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:141:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "fastqFile::getSequence(full)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:141:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "fastqFile::getSequence(full)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:242:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "fastqFile::getSequence(part)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:242:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "fastqFile::getSequence(part)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C: In member function âvoid fastqFile::loadIndex(char*)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:341:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_header, sizeof(fastqFileHeader), 1, I); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:361:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_index, sizeof(fastqFileIndex), _header._numberOfSequences, I); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.C:362:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_names, sizeof(char), _header._namesLength, I); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:2: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:2: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:2: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:2: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:129:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStore::getSequence(full)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:129:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStore::getSequence(full)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:197:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStore::getSequence(part)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:197:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStore::getSequence(part)-- iid "u32bitFMT" more than number of sequences "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:203:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStore::getSequence(part)-- for iid "u32bitFMT"; invalid bgn="u32bitFMT" end="u32bitFMT"; seqLen="u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:203:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStore::getSequence(part)-- for iid "u32bitFMT"; invalid bgn="u32bitFMT" end="u32bitFMT"; seqLen="u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:203:96: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > re::getSequence(part)-- for iid "u32bitFMT"; invalid bgn="u32bitFMT" end="u32bitFMT"; seqLen="u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:203:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > part)-- for iid "u32bitFMT"; invalid bgn="u32bitFMT" end="u32bitFMT"; seqLen="u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:463:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "constructSeqStore()-- sequence %s too long, must be shorter than "u64bitFMT" Gbp.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:467:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "constructSeqStore()-- too many sequences, must be fewer than "u64bitFMT".\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:620:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("u32bitFMT" sequences, "u64bitFMT" ACGT letters, "u32bitFMT" ACGT blocks, "u32bitFMT" GAP blocks).\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:620:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > stderr, "constructSeqStore()-- seqStore '%s' constructed ("u32bitFMT" sequences, "u64bitFMT" ACGT letters, "u32bitFMT" ACGT blocks, "u32bitFMT" GAP blocks).\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:620:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > ore()-- seqStore '%s' constructed ("u32bitFMT" sequences, "u64bitFMT" ACGT letters, "u32bitFMT" ACGT blocks, "u32bitFMT" GAP blocks).\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:620:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > tructed ("u32bitFMT" sequences, "u64bitFMT" ACGT letters, "u32bitFMT" ACGT blocks, "u32bitFMT" GAP blocks).\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C: In function âvoid constructSeqStore(char*, seqCache*)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:410:42: warning: âmemsetâ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] > memset(&HEAD, sizeof(seqStoreHeader), 0); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C: In constructor âseqStore::seqStore(const char*)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:21:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_header, sizeof(seqStoreHeader), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C: In member function âvirtual seqFile* seqStore::openFile(const char*)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:73:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&magic1, sizeof(u64bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:74:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&magic2, sizeof(u64bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C: In member function âvoid seqStore::loadIndex()â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:318:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_header, sizeof(seqStoreHeader), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:329:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread( _index, sizeof(seqStoreIndex), _header._numberOfSequences, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:343:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread( _block, sizeof(seqStoreBlock), _header._numberOfBlocks, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.C:347:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread( _names, sizeof(char), _header._namesLength, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.C:171:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqCache::loadAllSequences()-- Failed to load iid "u32bitFMT".\n", > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:2: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:2: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:2: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:236:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStream::setRange()-- ERROR: range ("u64bitFMT","u64bitFMT") too big; only "u64bitFMT" positions.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:236:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStream::setRange()-- ERROR: range ("u64bitFMT","u64bitFMT") too big; only "u64bitFMT" positions.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:236:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > tderr, "seqStream::setRange()-- ERROR: range ("u64bitFMT","u64bitFMT") too big; only "u64bitFMT" positions.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:268:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStream::sequenceNumberOfPosition()-- WARNING: position p="u64bitFMT" too big; only "u64bitFMT" positions.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:268:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > qStream::sequenceNumberOfPosition()-- WARNING: position p="u64bitFMT" too big; only "u64bitFMT" positions.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:340:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="u32bitFMT" bgn="u32bitFMT" end="u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:340:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > Stream::fillBuffer()-- Failed to getSequence(part) #1 iid="u32bitFMT" bgn="u32bitFMT" end="u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:340:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > er()-- Failed to getSequence(part) #1 iid="u32bitFMT" bgn="u32bitFMT" end="u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:386:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="u32bitFMT" bgn="u32bitFMT" end="u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:386:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > Stream::fillBuffer()-- Failed to getSequence(part) #2 iid="u32bitFMT" bgn="u32bitFMT" end="u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.C:386:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > er()-- Failed to getSequence(part) #2 iid="u32bitFMT" bgn="u32bitFMT" end="u32bitFMT"\n", > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:1:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:7:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "generateCorrectSequence()-- Using seed "u32bitFMT"\n", seed); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "generateCorrectSequence()-- Generating "u32bitFMT" sequences of length "u32bitFMT" to "u32bitFMT"\n", numSeq, minLen, maxLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "generateCorrectSequence()-- Generating "u32bitFMT" sequences of length "u32bitFMT" to "u32bitFMT"\n", numSeq, minLen, maxLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > ctSequence()-- Generating "u32bitFMT" sequences of length "u32bitFMT" to "u32bitFMT"\n", numSeq, minLen, maxLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:15:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testID:"u32bitFMT" - empty sequence\n", testID); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:22:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testID:"u32bitFMT" - header differs '%s' vs '%s'\n", testID, S->header(), correctSequence[sid].header); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:26:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testID:"u32bitFMT" - header length differs "u32bitFMT" vs "u32bitFMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:26:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testID:"u32bitFMT" - header length differs "u32bitFMT" vs "u32bitFMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:26:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > rintf(stderr, "testID:"u32bitFMT" - header length differs "u32bitFMT" vs "u32bitFMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:30:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testID:"u32bitFMT" - sequence differs\n", testID); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:34:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testID:"u32bitFMT" - sequence length differs strlen "u32bitFMT" vs "u32bitFMT"\n", testID, (u32bit)strlen(S->sequence()), correctSequence[sid].sequenceLength); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:34:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testID:"u32bitFMT" - sequence length differs strlen "u32bitFMT" vs "u32bitFMT"\n", testID, (u32bit)strlen(S->sequence()), correctSequence[sid].sequenceLength); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:34:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > err, "testID:"u32bitFMT" - sequence length differs strlen "u32bitFMT" vs "u32bitFMT"\n", testID, (u32bit)strlen(S->sequence()), correctSequence[sid].sequenceLength); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:38:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testID:"u32bitFMT" - sequence length differs "u32bitFMT" vs "u32bitFMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:38:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testID:"u32bitFMT" - sequence length differs "u32bitFMT" vs "u32bitFMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.C:38:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > ntf(stderr, "testID:"u32bitFMT" - sequence length differs "u32bitFMT" vs "u32bitFMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:1:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:7:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "generateCorrectSequence()-- Using seed "u32bitFMT"\n", seed); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "generateCorrectSequence()-- Generating "u32bitFMT" sequences of length "u32bitFMT" to "u32bitFMT"\n", numSeq, minLen, maxLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "generateCorrectSequence()-- Generating "u32bitFMT" sequences of length "u32bitFMT" to "u32bitFMT"\n", numSeq, minLen, maxLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > ctSequence()-- Generating "u32bitFMT" sequences of length "u32bitFMT" to "u32bitFMT"\n", numSeq, minLen, maxLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:17:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testIndexing()-- numSeq="u32bitFMT" sep=%c sepLen="u32bitFMT"\n", numSeq, sep, sepLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:17:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testIndexing()-- numSeq="u32bitFMT" sep=%c sepLen="u32bitFMT"\n", numSeq, sep, sepLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:55:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "lengthOf "u32bitFMT" returned "u32bitFMT", not correct "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:55:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "lengthOf "u32bitFMT" returned "u32bitFMT", not correct "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:55:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "lengthOf "u32bitFMT" returned "u32bitFMT", not correct "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:60:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "startOf "u32bitFMT" returned "u64bitFMT", not correct "u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:60:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "startOf "u32bitFMT" returned "u64bitFMT", not correct "u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:60:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "startOf "u32bitFMT" returned "u64bitFMT", not correct "u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:65:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "IIDOf "u32bitFMT" returned "u32bitFMT", not correct "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:65:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "IIDOf "u32bitFMT" returned "u32bitFMT", not correct "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:65:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "IIDOf "u32bitFMT" returned "u32bitFMT", not correct "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:74:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sequenceNumberOfPosition "u64bitFMT" returned "u32bitFMT", not correct "u32bitFMT".\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:74:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sequenceNumberOfPosition "u64bitFMT" returned "u32bitFMT", not correct "u32bitFMT".\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:74:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > tf(stderr, "sequenceNumberOfPosition "u64bitFMT" returned "u32bitFMT", not correct "u32bitFMT".\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:95:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "wrong separator at sep "u32bitFMT" got %d expected %d\n", x, s, sep); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:124:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:124:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:124:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:128:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- seqPos wrong got "u32bitFMT"\n", sp, si, st, ch, chainSeqPos[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:128:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- seqPos wrong got "u32bitFMT"\n", sp, si, st, ch, chainSeqPos[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:128:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- seqPos wrong got "u32bitFMT"\n", sp, si, st, ch, chainSeqPos[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:128:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- seqPos wrong got "u32bitFMT"\n", sp, si, st, ch, chainSeqPos[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:132:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- seqIID wrong got"u32bitFMT"\n", sp, si, st, ch, chainSeqIID[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:132:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- seqIID wrong got"u32bitFMT"\n", sp, si, st, ch, chainSeqIID[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:132:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- seqIID wrong got"u32bitFMT"\n", sp, si, st, ch, chainSeqIID[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:132:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- seqIID wrong got"u32bitFMT"\n", sp, si, st, ch, chainSeqIID[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:136:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- strPos wrong got "u64bitFMT"\n", sp, si, st, ch, chainStrPos[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:136:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- strPos wrong got "u64bitFMT"\n", sp, si, st, ch, chainStrPos[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:136:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- strPos wrong got "u64bitFMT"\n", sp, si, st, ch, chainStrPos[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:136:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sp="u32bitFMT" si="u32bitFMT" st="u64bitFMT" ch=%c -- strPos wrong got "u64bitFMT"\n", sp, si, st, ch, chainStrPos[sib]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:145:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "iterated length wrong; sib="u32bitFMT" sie="u32bitFMT"\n", sib, sie); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:145:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "iterated length wrong; sib="u32bitFMT" sie="u32bitFMT"\n", sib, sie); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:159:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testChaining()-- numSeq="u32bitFMT" sep=%c sepLen="u32bitFMT"\n", numSeq, sep, sepLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.C:159:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "testChaining()-- numSeq="u32bitFMT" sep=%c sepLen="u32bitFMT"\n", numSeq, sep, sepLen); > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:1:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:3: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:7:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "generateCorrectSequence()-- Using seed "u32bitFMT"\n", seed); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "generateCorrectSequence()-- Generating "u32bitFMT" sequences of length "u32bitFMT" to "u32bitFMT"\n", numSeq, minLen, maxLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "generateCorrectSequence()-- Generating "u32bitFMT" sequences of length "u32bitFMT" to "u32bitFMT"\n", numSeq, minLen, maxLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > ctSequence()-- Generating "u32bitFMT" sequences of length "u32bitFMT" to "u32bitFMT"\n", numSeq, minLen, maxLen); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:11:2: warning: #warning HOW DO WE TEST IF WE GET ALL THE MERS? [-Wcpp] > #warning HOW DO WE TEST IF WE GET ALL THE MERS? > ^~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:33:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "MS pos="u32bitFMT" posInSeq="u64bitFMT" posInStr="u64bitFMT" seqNum="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:33:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "MS pos="u32bitFMT" posInSeq="u64bitFMT" posInStr="u64bitFMT" seqNum="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:33:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "MS pos="u32bitFMT" posInSeq="u64bitFMT" posInStr="u64bitFMT" seqNum="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:33:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > stdout, "MS pos="u32bitFMT" posInSeq="u64bitFMT" posInStr="u64bitFMT" seqNum="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:39:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "MS pos="u32bitFMT" failed '%s' != '%s'.\n", pos, testmer, seq + pos); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:124:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "mer stream position out of range; at "u32bitFMT", range "u32bitFMT"-"u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:124:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "mer stream position out of range; at "u32bitFMT", range "u32bitFMT"-"u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:124:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "mer stream position out of range; at "u32bitFMT", range "u32bitFMT"-"u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C: In function âint main(int, char**)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:219:80: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > new seqStream("GGGTCAACTCCGCCCGCACTCTAGC", 25), > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:223:64: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:225:64: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:228:64: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:239:90: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > new seqStream("GGGAATTTTCAACTCCGCCCGCACTCTAGCCCAAA", 35), > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:243:60: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:245:60: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.C:248:60: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); > ^ >rm -f /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a && ar ruvs /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaFile.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastqFile.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/fastaStdin.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/sffFile.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqFactory.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqCache.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/seqStream.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/merStream.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-acgtspace.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-acgtspace.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-colorspace.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-colorspace.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/halign.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/halign.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/reversecomplement.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/reversecomplement.c >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.H:28:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.H:29, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.H:29, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.H:29, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >rm -f /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a && ar ruvs /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-acgtspace.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-colorspace.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/halign.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/reversecomplement.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-acgtspace.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/alphabet-colorspace.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/halign.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/reversecomplement.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/kmer.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/file.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/file.c >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/file.c: In function âopenFileâ: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/file.c:390:9: warning: variable âisRWâ set but not used [-Wunused-but-set-variable] > int isRW = 1; > ^~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/md5.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/md5.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/palloc.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/palloc.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/qsort_mt.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/qsort_mt.c >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/qsort_mt.c: In function âqsort_algoâ: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/qsort_mt.c:264:13: warning: variable âidâ set but not used [-Wunused-but-set-variable] > pthread_t id; > ^~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/qsort_mt.c: In function âqsort_threadâ: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/qsort_mt.c:370:13: warning: variable âidâ set but not used [-Wunused-but-set-variable] > pthread_t id; > ^~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.c >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C: In member function âvoid bigQueue::mergeTemporaryFiles()â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C:204:16: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(thing, _objectSize, 1, _temporaryFiles[i]); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C:255:14: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(thing, _objectSize, 1, _temporaryFiles[fileid]); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C: In member function âbool bigQueue::next()â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.C:302:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_thingBuffer, _objectSize, 1, _temporaryFiles[0]); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.C:7: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.C:7: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.C:7: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.C:7: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.C:34:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "bitPackedArray::get()-- element index "u64bitFMT" is out of range, only "u64bitFMT" elements.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.C:34:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "bitPackedArray::get()-- element index "u64bitFMT" is out of range, only "u64bitFMT" elements.\n", > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:166:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " at position "u64bitHEX"\n", file_offset); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:365:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "bitPackedFile::seekNormal() '%s' seek to pos="u64bitFMT" failed: %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:374:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "bitPackedFile::seekNormal() '%s' read of "u64bitFMT" bytes failed': %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C: In constructor âbitPackedFile::bitPackedFile(const char*, u64bit, bool)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:107:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, t, sizeof(char) * 16); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:108:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &at, sizeof(u64bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:109:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &bt, sizeof(u64bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C: In member function âvoid bitPackedFile::flushDirty()â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.C:230:8: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, _bfr, sizeof(u64bit) * _bfrmax); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/fibonacciNumbers.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/fibonacciNumbers.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/fibonacciNumbers.C:1:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/intervalList.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/intervalList.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/intervalList.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/intervalList.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/intervalList.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/intervalList.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C:132:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "readBuffer::fillBuffer()-- only read "u64bitFMT" bytes, couldn't read "u64bitFMT" bytes from '%s': %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C:132:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "readBuffer::fillBuffer()-- only read "u64bitFMT" bytes, couldn't read "u64bitFMT" bytes from '%s': %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C:165:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "readBuffer()-- '%s' couldn't seek to position "s64bitFMT": %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.C:228:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "readBuffer()-- couldn't read "u64bitFMT" bytes from '%s': n%s\n", > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:227:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "recordFile::seek() '%s' seek to record="u64bitFMT" at fileposition="u64bitFMT" failed: %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:227:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "recordFile::seek() '%s' seek to record="u64bitFMT" at fileposition="u64bitFMT" failed: %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:233:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "recordFile::seek() '%s' read of "u64bitFMT" bytes failed at record "u64bitFMT", fileposition "u64bitFMT"': %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:233:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "recordFile::seek() '%s' read of "u64bitFMT" bytes failed at record "u64bitFMT", fileposition "u64bitFMT"': %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:233:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > e::seek() '%s' read of "u64bitFMT" bytes failed at record "u64bitFMT", fileposition "u64bitFMT"': %s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C: In constructor ârecordFile::recordFile(const char*, u32bit, u32bit, char)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:68:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &recordFileMagic1, sizeof(u64bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:69:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &recordFileMagic2, sizeof(u64bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:70:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &_numRecords, sizeof(u64bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:71:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &_recordSize, sizeof(u32bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:72:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &_headerSize, sizeof(u32bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:73:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, _header, sizeof(char) * _headerSize); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:112:9: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > read(_file, &m1, sizeof(u64bit)); > ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:113:9: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > read(_file, &m2, sizeof(u64bit)); > ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:114:9: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > read(_file, &_numRecords, sizeof(u64bit)); > ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:115:9: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > read(_file, &_recordSize, sizeof(u32bit)); > ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:116:9: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > read(_file, &_headerSize, sizeof(u32bit)); > ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:117:9: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > read(_file, _header, sizeof(char) * _headerSize); > ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C: In destructor ârecordFile::~recordFile()â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:151:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &recordFileMagic1, sizeof(u64bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:152:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &recordFileMagic2, sizeof(u64bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:153:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &_numRecords, sizeof(u64bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:154:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &_recordSize, sizeof(u32bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:155:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, &_headerSize, sizeof(u32bit)); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:156:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, _header, sizeof(char) * _headerSize); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C: In member function âvoid recordFile::flushDirty()â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:197:8: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(_file, _bfr, _recordSize * _rec); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C: In member function âvoid recordFile::seek(u64bit, bool)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.C:231:7: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > read(_file, _bfr, _recordSize * _bfrmax); > ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/speedCounter.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/speedCounter.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/speedCounter.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/speedCounter.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/speedCounter.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/speedCounter.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.H:7, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.H:7, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.H:7, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.H:7, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:127:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sweatShop::setThreadData()-- worker ID "u32bitFMT" more than number of workers="u32bitFMT"\n", t, _numberOfWorkers), exit(1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:127:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sweatShop::setThreadData()-- worker ID "u32bitFMT" more than number of workers="u32bitFMT"\n", t, _numberOfWorkers), exit(1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:390:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " %6.1f/s - "u64bitFMTW(8)" loaded; "u64bitFMTW(8)" queued for compute; "u64bitFMTW(8)" finished; "u64bitFMTW(8)" written; "u64bitFMTW(8)" queued for output)\r", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:390:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " %6.1f/s - "u64bitFMTW(8)" loaded; "u64bitFMTW(8)" queued for compute; "u64bitFMTW(8)" finished; "u64bitFMTW(8)" written; "u64bitFMTW(8)" queued for output)\r", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:390:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " %6.1f/s - "u64bitFMTW(8)" loaded; "u64bitFMTW(8)" queued for compute; "u64bitFMTW(8)" finished; "u64bitFMTW(8)" written; "u64bitFMTW(8)" queued for output)\r", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:390:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > tFMTW(8)" loaded; "u64bitFMTW(8)" queued for compute; "u64bitFMTW(8)" finished; "u64bitFMTW(8)" written; "u64bitFMTW(8)" queued for output)\r", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:390:135: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > MTW(8)" queued for compute; "u64bitFMTW(8)" finished; "u64bitFMTW(8)" written; "u64bitFMTW(8)" queued for output)\r", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:422:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " %6.1f/s - "u64bitFMTW(8)" queued for compute; "u64bitFMTW(8)" finished; "u64bitFMTW(8)" queued for output)\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:422:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " %6.1f/s - "u64bitFMTW(8)" queued for compute; "u64bitFMTW(8)" finished; "u64bitFMTW(8)" queued for output)\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:422:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > derr, " %6.1f/s - "u64bitFMTW(8)" queued for compute; "u64bitFMTW(8)" finished; "u64bitFMTW(8)" queued for output)\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:557:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sweatShop::run()-- Failed to launch worker thread "u32bitFMT": %s.\n", i, strerror(err)), exit(1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.C:577:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "sweatShop::run()-- Failed to join worker thread "u32bitFMT": %s.\n", i, strerror(err)), exit(1); > ^ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/dict.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/dict.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/except.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/except.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/hash.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/hash.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/list.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/list.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/sfx.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/sfx.c >rm -f /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a && ar ruvs /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/file.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/md5.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/palloc.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/qsort_mt.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/fibonacciNumbers.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/intervalList.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/speedCounter.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/dict.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/except.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/hash.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/list.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/sfx.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/file.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/md5.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/palloc.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/qsort_mt.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bigQueue.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/fibonacciNumbers.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/intervalList.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/readBuffer.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/recordFile.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/speedCounter.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/sweatShop.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/dict.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/except.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/hash.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/list.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/sfx.o >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o meryl/meryl meryl/meryl.o meryl/libmerylguts.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/simple.o -c meryl/simple.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/simple.C:8: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/simple.C:8: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/simple.C:8: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/simple.C:8: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/simple.C:98:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Guessing "u64bitFMT" mers in input '%s'\n", numMers, inName); > ^ >meryl/simple.C:99:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Allocating "u64bitFMT"MB for mer storage.\n", numMers * 8 >> 20); > ^ >meryl/simple.C:129:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Found "u64bitFMT" mers in input '%s'\n", theMersLen, inName); > ^ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o meryl/simple meryl/simple.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/asmMerQC.o -c meryl/asmMerQC.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from meryl/asmMerQC.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from meryl/asmMerQC.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from meryl/asmMerQC.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from meryl/asmMerQC.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/asmMerQC.C:50:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Mode of '%s' is "u32bitFMT"\n", name, mi); > ^ >meryl/asmMerQC.C:113:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(dumpSCZF, ">"u32bitFMT"\n%s\n", Ccnt, Cmer.merToString(merstring)); > ^ >meryl/asmMerQC.C:115:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(dumpMCZF, ">"u32bitFMT"\n%s\n", Ccnt, Cmer.merToString(merstring)); > ^ >meryl/asmMerQC.C:132:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(dumpSCZF, ">"u32bitFMT"\n%s\n", Ccnt, Cmer.merToString(merstring)); > ^ >meryl/asmMerQC.C:134:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(dumpMCZF, ">"u32bitFMT"\n%s\n", Ccnt, Cmer.merToString(merstring)); > ^ >meryl/asmMerQC.C:151:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(dumpMCSF, ">"u32bitFMT"\n%s\n", Ccnt, Cmer.merToString(merstring)); > ^ >meryl/asmMerQC.C:153:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(dumpMCMF, ">"u32bitFMT"\n%s\n", Ccnt, Cmer.merToString(merstring)); > ^ >meryl/asmMerQC.C:156:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(dumpSCZF, ">"u32bitFMT"\n%s\n", Ccnt, Cmer.merToString(merstring)); > ^ >meryl/asmMerQC.C:285:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " AF - "u32bitFMT"\n", ms[0]); > ^ >meryl/asmMerQC.C:286:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " TF - "u32bitFMT"\n", ms[1]); > ^ >meryl/asmMerQC.C:287:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " AC - "u32bitFMT"\n", ms[2]); > ^ >meryl/asmMerQC.C:288:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " DC - "u32bitFMT"\n", ms[3]); > ^ >meryl/asmMerQC.C:289:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " CO - "u32bitFMT"\n", ms[4]); > ^ >meryl/asmMerQC.C: In function âvoid compare(merylStreamReader*, merylStreamReader*, kMer&, u32bit, u32bit (*)[6])â: >meryl/asmMerQC.C:111:12: warning: suggest explicit braces to avoid ambiguous âelseâ [-Wdangling-else] > if (Ftype == 0) > ^ >meryl/asmMerQC.C:130:10: warning: suggest explicit braces to avoid ambiguous âelseâ [-Wdangling-else] > if (dumpFlag) > ^ >meryl/asmMerQC.C:149:8: warning: suggest explicit braces to avoid ambiguous âelseâ [-Wdangling-else] > if (Ftype < Ctype) > ^ >meryl/asmMerQC.C: In function âint main(int, char**)â: >meryl/asmMerQC.C:384:81: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > f ((AF) && (AC)) output("all frags vs all contigs", AFmode, AFvsAC); > ^ >meryl/asmMerQC.C:385:81: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > f ((AF) && (DC)) output("all frags vs deg. contigs", AFmode, AFvsDC); > ^ >meryl/asmMerQC.C:386:81: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > f ((AF) && (CO)) output("all frags vs non-deg. contigs", AFmode, AFvsCO); > ^ >meryl/asmMerQC.C:387:81: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > f ((TF) && (AC)) output("trimmed frags vs all contigs", TFmode, TFvsAC); > ^ >meryl/asmMerQC.C:388:81: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > f ((TF) && (DC)) output("trimmed frags vs deg. contigs", TFmode, TFvsDC); > ^ >meryl/asmMerQC.C:389:81: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > f ((TF) && (CO)) output("trimmed frags vs non-deg. contigs", TFmode, TFvsCO); > ^ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o meryl/asmMerQC meryl/asmMerQC.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/mapMers.o -c meryl/mapMers.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/mapMers.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/mapMers.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/mapMers.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/mapMers.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/mapMers.C:93:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"u64bitFMT"\t"u64bitFMT"\t"u64bitFMT"\n", S->header(), beg, end+merSize, end+merSize - beg); > ^ >meryl/mapMers.C:93:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"u64bitFMT"\t"u64bitFMT"\t"u64bitFMT"\n", S->header(), beg, end+merSize, end+merSize - beg); > ^ >meryl/mapMers.C:93:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"u64bitFMT"\t"u64bitFMT"\t"u64bitFMT"\n", S->header(), beg, end+merSize, end+merSize - beg); > ^ >meryl/mapMers.C:113:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"u64bitFMT"\t"u64bitFMT"\t"u64bitFMT"\n", S->header(), beg, end+merSize, end+merSize - beg); > ^ >meryl/mapMers.C:113:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"u64bitFMT"\t"u64bitFMT"\t"u64bitFMT"\n", S->header(), beg, end+merSize, end+merSize - beg); > ^ >meryl/mapMers.C:113:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"u64bitFMT"\t"u64bitFMT"\t"u64bitFMT"\n", S->header(), beg, end+merSize, end+merSize - beg); > ^ >meryl/mapMers.C:115:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "numCovReg: "u64bitFMT"\n", numCovReg); > ^ >meryl/mapMers.C:116:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "lenCovReg: "u64bitFMT"\n", lenCovReg); > ^ >meryl/mapMers.C: In function âint main(int, char**)â: >meryl/mapMers.C:19:13: warning: variable âbeVerboseâ set but not used [-Wunused-but-set-variable] > bool beVerbose = false; > ^~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-fasta.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-fasta.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-fasta.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-fasta.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-fasta.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-fasta.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:98:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "existDB::createFromMeryl()-- Found "u64bitFMT" mers between count of "u32bitFMT" and "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:98:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "existDB::createFromMeryl()-- Found "u64bitFMT" mers between count of "u32bitFMT" and "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:98:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > eateFromMeryl()-- Found "u64bitFMT" mers between count of "u32bitFMT" and "u32bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:117:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "existDB::createFromMeryl()-- hashTable is "u64bitFMT"MB\n", _hashTableWords >> 17); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:118:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "existDB::createFromMeryl()-- buckets is "u64bitFMT"MB\n", _bucketsWords >> 17); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.C:120:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "existDB::createFromMeryl()-- counts is "u64bitFMT"MB\n", _countsWords >> 17); > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:156:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "merSizeInBases: "u32bitFMT"\n", _merSizeInBases); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:157:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "tableBits "u32bitFMT"\n", 2 * _merSizeInBases - _shift1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:159:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_hashTableWords "u64bitFMT" ("u64bitFMT" KB)\n", _hashTableWords, _hashTableWords >> 7); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:159:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_hashTableWords "u64bitFMT" ("u64bitFMT" KB)\n", _hashTableWords, _hashTableWords >> 7); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:160:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_bucketsWords "u64bitFMT" ("u64bitFMT" KB)\n", _bucketsWords, _bucketsWords >> 7); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:160:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_bucketsWords "u64bitFMT" ("u64bitFMT" KB)\n", _bucketsWords, _bucketsWords >> 7); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:161:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_countsWords "u64bitFMT" ("u64bitFMT" KB)\n", _countsWords, _countsWords >> 7); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:161:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_countsWords "u64bitFMT" ("u64bitFMT" KB)\n", _countsWords, _countsWords >> 7); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:163:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_shift1: "u32bitFMT"\n", _shift1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:164:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_shift2 "u32bitFMT"\n", _shift2); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:165:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_mask1 "u64bitHEX"\n", _mask1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:166:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_mask2 "u64bitHEX"\n", _mask2); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:170:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_hshWidth "u32bitFMT"\n", _hshWidth); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:178:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_chkWidth "u32bitFMT"\n", _chkWidth); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:186:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "_cntWidth "u32bitFMT"\n", _cntWidth); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C: In member function âbool existDB::loadState(const char*, bool, bool)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:77:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(cigam, sizeof(char), 16, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:116:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_merSizeInBases, sizeof(u32bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:117:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_shift1, sizeof(u32bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:118:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_shift2, sizeof(u32bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:119:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_mask1, sizeof(u64bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:120:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_mask2, sizeof(u64bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:121:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_hshWidth, sizeof(u32bit), 1, F); // only valid if _compressedHash > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:122:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_chkWidth, sizeof(u32bit), 1, F); // only valid if _compressedBucket > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:123:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_cntWidth, sizeof(u32bit), 1, F); // only valid if _compressedCounts > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:125:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_hashTableWords, sizeof(u64bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:126:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_bucketsWords, sizeof(u64bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:127:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_countsWords, sizeof(u64bit), 1, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:137:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_hashTable, sizeof(u64bit), _hashTableWords, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:138:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_buckets, sizeof(u64bit), _bucketsWords, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.C:139:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_counts, sizeof(u64bit), _countsWords, F); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.H:4, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.C:42:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "existDB::existDB()-- Got "u32bitFMT", expected "u32bitFMT"\n", _merSizeInBases, merSize); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.C:42:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "existDB::existDB()-- Got "u32bitFMT", expected "u32bitFMT"\n", _merSizeInBases, merSize); > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:2:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift1 = "u32bitFMT"\n", _shift1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift2 = "u32bitFMT"\n", _shift2); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "M = "u64bitHEX"\n", m); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "H = "u64bitHEX"\n", h); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "C = "u64bitHEX"\n", c); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "R = "u64bitHEX"\n", r); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:22:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB::get()-- Can't allocate space for more positions, requested "u64bitFMT" u64bit's.\n", posnMax); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:215:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "u64bitFMT" and more than "u64bitFMT"\n", lo, hi); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:215:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > r, "positionDB::filter()-- Filtering out kmers less than "u64bitFMT" and more than "u64bitFMT"\n", lo, hi); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:339:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB::filter()-- Filtered "u64bitFMT" kmers less than "u64bitFMT"\n", loCount, lo); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:339:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB::filter()-- Filtered "u64bitFMT" kmers less than "u64bitFMT"\n", loCount, lo); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:340:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB::filter()-- Filtered "u64bitFMT" kmers more than "u64bitFMT"\n", hiCount, hi); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:340:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB::filter()-- Filtered "u64bitFMT" kmers more than "u64bitFMT"\n", hiCount, hi); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:341:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB::filter()-- Saved "u64bitFMT" kmers with acceptable count\n", okCount); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C: In member function âvoid positionDB::filter(u64bit, u64bit)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.C:204:11: warning: unused variable âvvâ [-Wunused-variable] > u64bit vv; > ^~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:4:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift1 = "u32bitFMT"\n", _shift1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift2 = "u32bitFMT"\n", _shift2); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "M = "u64bitHEX"\n", m); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "H = "u64bitHEX"\n", h); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "C = "u64bitHEX"\n", c); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "R = "u64bitHEX"\n", r); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:25:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(F, "B "u64bitFMT" "u64bitFMT"-"u64bitFMT"\n", h, st, ed); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:25:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(F, "B "u64bitFMT" "u64bitFMT"-"u64bitFMT"\n", h, st, ed); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:25:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(F, "B "u64bitFMT" "u64bitFMT"-"u64bitFMT"\n", h, st, ed); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:32:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(F, "%c chk="u64bitHEX" pos="u64bitFMT" siz="u64bitFMT, > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:32:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(F, "%c chk="u64bitHEX" pos="u64bitFMT" siz="u64bitFMT, > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:32:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(F, "%c chk="u64bitHEX" pos="u64bitFMT" siz="u64bitFMT, > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.C:40:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(F, " "u64bitFMT, getDecodedValue(_positions, pos, _posnWidth)); > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:1:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift1 = "u32bitFMT"\n", _shift1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift2 = "u32bitFMT"\n", _shift2); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "M = "u64bitHEX"\n", m); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "H = "u64bitHEX"\n", h); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "C = "u64bitHEX"\n", c); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "R = "u64bitHEX"\n", r); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:197:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "merSizeInBases: "u32bitFMT"\n", _merSizeInBases); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:198:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "merSkipInBases: "u32bitFMT"\n", _merSkipInBases); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:199:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "tableSizeInBits: "u32bitFMT"\n", _tableSizeInBits); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:200:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "tableSizeInEntries: "u64bitFMT"\n", _tableSizeInEntries); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:201:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "hashWidth: "u32bitFMT"\n", _hashWidth); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:202:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "chckWidth: "u32bitFMT"\n", _chckWidth); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:203:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "posnWidth: "u32bitFMT"\n", _posnWidth); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:204:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "numberOfMers: "u64bitFMT"\n", _numberOfMers); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:205:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "numberOfPositions: "u64bitFMT"\n", _numberOfPositions); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:206:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "numberOfDistinct: "u64bitFMT"\n", _numberOfDistinct); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:207:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "numberOfUnique: "u64bitFMT"\n", _numberOfUnique); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:208:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "numberOfEntries: "u64bitFMT"\n", _numberOfEntries); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:209:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "maximumEntries: "u64bitFMT"\n", _maximumEntries); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C: In member function âvoid positionDB::saveState(const char*)â: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:63:73: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] > _hashTable_FW = (u32bit *)((_hashTable_FW) ? u32bitONE : u32bitZERO); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:37:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(F, magic, sizeof(char) * 16); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:39:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(F, faild, sizeof(char) * 16); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.C:95:10: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result [-Wunused-result] > write(F, magic, sizeof(char) * 16); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.C:1:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift1 = "u32bitFMT"\n", _shift1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift2 = "u32bitFMT"\n", _shift2); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "M = "u64bitHEX"\n", m); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "H = "u64bitHEX"\n", h); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "C = "u64bitHEX"\n", c); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "R = "u64bitHEX"\n", r); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.C:324:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB::getUpToNMismatches()-- Can't allocate space for initial positions, requested "u64bitFMT" u64bit's.\n", posnMax); > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:5, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:1:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift1 = "u32bitFMT"\n", _shift1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift2 = "u32bitFMT"\n", _shift2); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "M = "u64bitHEX"\n", m); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "H = "u64bitHEX"\n", h); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "C = "u64bitHEX"\n", c); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "R = "u64bitHEX"\n", r); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:37:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "ERROR: Bucket "u64bitFMT" starts at "u64bitFMT" ends at "u64bitFMT"?\n", b, st, ed); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:37:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "ERROR: Bucket "u64bitFMT" starts at "u64bitFMT" ends at "u64bitFMT"?\n", b, st, ed); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:37:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "ERROR: Bucket "u64bitFMT" starts at "u64bitFMT" ends at "u64bitFMT"?\n", b, st, ed); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:78:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "ERROR: unset posn bucket="u64bitFMT" t="s64bitFMT" le="u32bitFMT"\n", b, t, le); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:78:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "ERROR: unset posn bucket="u64bitFMT" t="s64bitFMT" le="u32bitFMT"\n", b, t, le); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:78:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "ERROR: unset posn bucket="u64bitFMT" t="s64bitFMT" le="u32bitFMT"\n", b, t, le); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:86:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, u32bitFMTW(4)"] chck="u64bitHEX" posn="u64bitFMT"\n", t, _sortedChck[t], _sortedPosn[t]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:86:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, u32bitFMTW(4)"] chck="u64bitHEX" posn="u64bitFMT"\n", t, _sortedChck[t], _sortedPosn[t]); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "ERROR: bucket="u64bitFMT" t="u32bitFMT" le="u32bitFMT": "u64bitHEX" > "u64bitHEX"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:110:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "ERROR: bucket="u64bitFMT" t="u32bitFMT" le="u32bitFMT": "u64bitHEX" > "u64bitHEX"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:110:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "ERROR: bucket="u64bitFMT" t="u32bitFMT" le="u32bitFMT": "u64bitHEX" > "u64bitHEX"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:110:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > rintf(stdout, "ERROR: bucket="u64bitFMT" t="u32bitFMT" le="u32bitFMT": "u64bitHEX" > "u64bitHEX"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.C:110:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "ERROR: bucket="u64bitFMT" t="u32bitFMT" le="u32bitFMT": "u64bitHEX" > "u64bitHEX"\n", > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:6:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift1 = "u32bitFMT"\n", _shift1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift2 = "u32bitFMT"\n", _shift2); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "M = "u64bitHEX"\n", m); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "H = "u64bitHEX"\n", h); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "C = "u64bitHEX"\n", c); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "R = "u64bitHEX"\n", r); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:45:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "u32bitFMT", wanted "u32bitFMT").\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:45:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > ied to read state from '%s', but mer size is wrong (found "u32bitFMT", wanted "u32bitFMT").\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:51:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "u32bitFMT", wanted "u32bitFMT").\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:51:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > ied to read state from '%s', but mer skip is wrong (found "u32bitFMT", wanted "u32bitFMT").\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:57:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "u32bitFMT", wanted "u32bitFMT").\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:57:123: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > e from '%s', but max number of mismatches is wrong (found "u32bitFMT", wanted "u32bitFMT").\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:126:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " sm = "u64bitFMT"\n", sm); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:127:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " lg = "u64bitFMT"\n", lg); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:128:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " merSize = "u32bitFMT" bits\n", 2 * merSize); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:129:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " approxMers = "u64bitFMT" mers\n", approxMers); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:130:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " posnWidth = "u64bitFMT" bits\n", posnWidth); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:141:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "potential configurations for approximately "u64bitFMT" "u32bitFMT"-mers (posnW="u64bitFMT").\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:141:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > rintf(stderr, "potential configurations for approximately "u64bitFMT" "u32bitFMT"-mers (posnW="u64bitFMT").\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:141:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > , "potential configurations for approximately "u64bitFMT" "u32bitFMT"-mers (posnW="u64bitFMT").\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:199:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "tblBits="u64bitFMTW(2)" shifts="u32bitFMTW(02)","u32bitFMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:199:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "tblBits="u64bitFMTW(2)" shifts="u32bitFMTW(02)","u32bitFMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:199:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "tblBits="u64bitFMTW(2)" shifts="u32bitFMTW(02)","u32bitFMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:216:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "tblBits="u32bitFMT" s1="u32bitFMT" s2="u32bitFMT" -- merSize="u32bitFMT" bits + posnWidth="u64bitFMT" bits (est "u64bitFMT" mers) FINAL\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:216:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "tblBits="u32bitFMT" s1="u32bitFMT" s2="u32bitFMT" -- merSize="u32bitFMT" bits + posnWidth="u64bitFMT" bits (est "u64bitFMT" mers) FINAL\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:216:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "tblBits="u32bitFMT" s1="u32bitFMT" s2="u32bitFMT" -- merSize="u32bitFMT" bits + posnWidth="u64bitFMT" bits (est "u64bitFMT" mers) FINAL\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:216:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "tblBits="u32bitFMT" s1="u32bitFMT" s2="u32bitFMT" -- merSize="u32bitFMT" bits + posnWidth="u64bitFMT" bits (est "u64bitFMT" mers) FINAL\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:216:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > Bits="u32bitFMT" s1="u32bitFMT" s2="u32bitFMT" -- merSize="u32bitFMT" bits + posnWidth="u64bitFMT" bits (est "u64bitFMT" mers) FINAL\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:216:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > T" s2="u32bitFMT" -- merSize="u32bitFMT" bits + posnWidth="u64bitFMT" bits (est "u64bitFMT" mers) FINAL\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:325:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- bktAlloc = new u64bit ["u64bitFMT"]\n", _tableSizeInEntries / 2 + 4); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:347:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocated bucket size counting space with total size "u64bitFMT" KB\n", _tableSizeInEntries >> 8); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:391:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Found "u64bitFMT" mers (max position = "u64bitFMT")\n", _numberOfMers, _numberOfPositions); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:391:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Found "u64bitFMT" mers (max position = "u64bitFMT")\n", _numberOfMers, _numberOfPositions); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:429:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocated "u64bitFMT"KB for buckets ("u64bitFMT" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:429:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocated "u64bitFMT"KB for buckets ("u64bitFMT" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:434:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- _countingBuckets = new u64bit ["u64bitFMT"]\n", bucketsSpace); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:552:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Sorting and repacking buckets ("u64bitFMT" buckets).\n", _tableSizeInEntries); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:564:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Found "u64bitFMTW(12)" total mers\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:565:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Found "u64bitFMTW(12)" distinct mers\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:566:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Found "u64bitFMTW(12)" unique mers\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:567:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Need "u64bitFMT" non-unique position list entries ("u64bitFMT" maximum count)\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:567:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Need "u64bitFMT" non-unique position list entries ("u64bitFMT" maximum count)\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:636:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocated "u64bitFMTW(10)"KB for hash table ("u64bitFMT" 64-bit words)\n", hs >> 7, hs); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:636:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocated "u64bitFMTW(10)"KB for hash table ("u64bitFMT" 64-bit words)\n", hs >> 7, hs); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:642:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- _hashTable_BP = new u64bit ["u64bitFMT"]\n", hs); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:661:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Reusing bucket space; Have: "u64bitFMT" Need: "u64bitFMT" (64-bit words)\n", bucketsSpace, bs); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:661:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Reusing bucket space; Have: "u64bitFMT" Need: "u64bitFMT" (64-bit words)\n", bucketsSpace, bs); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:668:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocated "u64bitFMTW(10)"KB for buckets ("u64bitFMT" 64-bit words)\n", bs >> 7, bs); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:668:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocated "u64bitFMTW(10)"KB for buckets ("u64bitFMT" 64-bit words)\n", bs >> 7, bs); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:673:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- _buckets = new u64bit ["u64bitFMT"]\n", bs); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:679:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocated "u64bitFMTW(10)"KB for positions ("u64bitFMT" 64-bit words)\n", ps >> 7, ps); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:679:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Allocated "u64bitFMTW(10)"KB for positions ("u64bitFMT" 64-bit words)\n", ps >> 7, ps); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:684:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- _positions = new u64bit ["u64bitFMT"\n", ps); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:694:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Transferring to final structure ("u64bitFMT" buckets).\n", _tableSizeInEntries); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:877:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- ERROR: Got position "u64bitFMT", but only "u64bitFMT" available!\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:877:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "positionDB()-- ERROR: Got position "u64bitFMT", but only "u64bitFMT" available!\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:915:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Avail: Bucket "u64bitFMTW(12)" Position "u64bitFMTW(12)" (64-bit words)\n", bs, ps); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:915:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Avail: Bucket "u64bitFMTW(12)" Position "u64bitFMTW(12)" (64-bit words)\n", bs, ps); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:916:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Avail: Bucket "u64bitFMTW(12)" Position "u64bitFMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:916:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Avail: Bucket "u64bitFMTW(12)" Position "u64bitFMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:917:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Used: Bucket "u64bitFMTW(12)" Position "u64bitFMTW(12)" (64-bit words)\n", currentBbit / 64, currentPbit / 64); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:917:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Used: Bucket "u64bitFMTW(12)" Position "u64bitFMTW(12)" (64-bit words)\n", currentBbit / 64, currentPbit / 64); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:927:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Used: Bucket "u64bitFMTW(12)" Position "u64bitFMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:927:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Used: Bucket "u64bitFMTW(12)" Position "u64bitFMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:929:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Found "u64bitFMTW(12)" total mers\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:930:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Found "u64bitFMTW(12)" distinct mers\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:931:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Found "u64bitFMTW(12)" unique mers\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:932:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Need "u64bitFMT" non-unique position list entries ("u64bitFMT" maximum count)\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:932:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > " Need "u64bitFMT" non-unique position list entries ("u64bitFMT" maximum count)\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:954:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Rebuilding the hash table, from "u32bitFMT" bits wide to "u32bitFMT" bits wide.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:954:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Rebuilding the hash table, from "u32bitFMT" bits wide to "u32bitFMT" bits wide.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:989:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Loading "u64bitFMT" mercounts.\n", counts->numberOfDistinctMers()); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:1012:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Loaded "u64bitFMT" mercounts; largest is "u64bitFMT".\n", countsLoaded, largestMerylCount); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:1012:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Loaded "u64bitFMT" mercounts; largest is "u64bitFMT".\n", countsLoaded, largestMerylCount); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:1016:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Compress sizes from "u32bitFMT" bits to "u32bitFMT" bits.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.C:1016:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, " Compress sizes from "u32bitFMT" bits to "u32bitFMT" bits.\n", > ^ >rm -f /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a && ar ruvs /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-fasta.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-fasta.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-create-from-meryl.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB-state.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-access.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-dump.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-file.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-mismatch.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB-sort.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.o >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o meryl/mapMers meryl/mapMers.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/mapMers-depth.o -c meryl/mapMers-depth.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/mapMers-depth.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/mapMers-depth.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/mapMers-depth.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/mapMers-depth.C:5: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/mapMers-depth.C:86:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, u32bitFMTW(7)"\t"u32bitFMTW(6)"\n", x, 0); > ^ >meryl/mapMers-depth.C:88:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, u32bitFMTW(7)"\t"u32bitFMTW(6)"\n", x, ID.de(i)); > ^ >meryl/mapMers-depth.C:91:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, u32bitFMTW(7)"\t"u32bitFMTW(6)"\n", x, 0); > ^ >meryl/mapMers-depth.C: In function âint main(int, char**)â: >meryl/mapMers-depth.C:17:13: warning: variable âbeVerboseâ set but not used [-Wunused-but-set-variable] > bool beVerbose = false; > ^~~~~~~~~ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o meryl/mapMers-depth meryl/mapMers-depth.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/testPositionBias.o -c meryl/testPositionBias.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/testPositionBias.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/testPositionBias.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/testPositionBias.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/testPositionBias.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/testPositionBias.C:67:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%c%c%c "u32bitFMTW(3)" A "u32bitFMTW(6)" B "u32bitFMTW(6)" %.5f C "u32bitFMTW(6)" %.5f\n", > ^ >meryl/testPositionBias.C:67:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%c%c%c "u32bitFMTW(3)" A "u32bitFMTW(6)" B "u32bitFMTW(6)" %.5f C "u32bitFMTW(6)" %.5f\n", > ^ >meryl/testPositionBias.C:67:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%c%c%c "u32bitFMTW(3)" A "u32bitFMTW(6)" B "u32bitFMTW(6)" %.5f C "u32bitFMTW(6)" %.5f\n", > ^ >meryl/testPositionBias.C:67:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > f(stdout, "%c%c%c "u32bitFMTW(3)" A "u32bitFMTW(6)" B "u32bitFMTW(6)" %.5f C "u32bitFMTW(6)" %.5f\n", > ^ >meryl/testPositionBias.C: In function âvoid showBias(u32bit)â: >meryl/testPositionBias.C:54:43: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > u32bit *A = collectCounts("CNPT3", base); > ^ >meryl/testPositionBias.C:55:50: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > u32bit *B = collectCounts("25.errorless", base); > ^ >meryl/testPositionBias.C:56:60: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > u32bit *C = collectCounts("25.errorless.simulated", base); > ^ >meryl/testPositionBias.C: In function âdouble computeRMSD(u32bit)â: >meryl/testPositionBias.C:83:43: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > u32bit *A = collectCounts("CNPT3", base); > ^ >meryl/testPositionBias.C:84:50: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > u32bit *B = collectCounts("25.errorless", base); > ^ >meryl/testPositionBias.C:85:60: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > u32bit *C = collectCounts("25.errorless.simulated", base); > ^ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o meryl/testPositionBias meryl/testPositionBias.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/maskMers.o -c meryl/maskMers.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from meryl/maskMers.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/maskMers.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/maskMers.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from meryl/maskMers.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/maskMers.C:141:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Loading sequence "u32bitFMT" of length "u32bitFMT"\n", i, _seqLen[i]); > ^ >meryl/maskMers.C:141:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Loading sequence "u32bitFMT" of length "u32bitFMT"\n", i, _seqLen[i]); > ^ >meryl/maskMers.C:279:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(outputName, "%s.density.seq"u32bitFMTW(02), outputPrefix, s); > ^ >meryl/maskMers.C:355:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Starting sequence "u32bitFMT"\n", s); > ^ >meryl/maskMers.C:357:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(outputName, "%s.mateRescue.seq"u32bitFMTW(02)".out", outputPrefix, s); > ^ >meryl/maskMers.C:360:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(outputName, "%s.mateRescue.seq"u32bitFMTW(02)".dat", outputPrefix, s); > ^ >meryl/maskMers.C:514:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(outputFile, u32bitFMT"\t"u32bitFMT"\t"u32bitFMT"\t%.0f\t%.0f\t"u32bitFMT"\t"s32bitFMT"\t"s32bitFMT"\n", > ^ >meryl/maskMers.C:514:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(outputFile, u32bitFMT"\t"u32bitFMT"\t"u32bitFMT"\t%.0f\t%.0f\t"u32bitFMT"\t"s32bitFMT"\t"s32bitFMT"\n", > ^ >meryl/maskMers.C:514:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(outputFile, u32bitFMT"\t"u32bitFMT"\t"u32bitFMT"\t%.0f\t%.0f\t"u32bitFMT"\t"s32bitFMT"\t"s32bitFMT"\n", > ^ >meryl/maskMers.C:514:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > utFile, u32bitFMT"\t"u32bitFMT"\t"u32bitFMT"\t%.0f\t%.0f\t"u32bitFMT"\t"s32bitFMT"\t"s32bitFMT"\n", > ^ >meryl/maskMers.C:514:100: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > tFMT"\t"u32bitFMT"\t"u32bitFMT"\t%.0f\t%.0f\t"u32bitFMT"\t"s32bitFMT"\t"s32bitFMT"\n", > ^ >meryl/maskMers.C: In member function âvoid merMaskedSequence::loadMasking(u32bit)â: >meryl/maskMers.C:125:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_numSeq, sizeof(u32bit), 1, maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >meryl/maskMers.C:126:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&_merSize, sizeof(u32bit), 1, maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >meryl/maskMers.C:134:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread( _seqLen, sizeof(u32bit), _numSeq, maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >meryl/maskMers.C:149:12: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_masking[i], sizeof(char), _seqLen[i], maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >meryl/maskMers.C:150:12: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(_repeatID[i], sizeof(u32bit), _seqLen[i], maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o meryl/maskMers meryl/maskMers.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o meryl/compare-counts.o -c meryl/compare-counts.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from meryl/compare-counts.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from meryl/compare-counts.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from meryl/compare-counts.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.H:4, > from meryl/compare-counts.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >meryl/compare-counts.C:123:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, u32bitFMT"\t"u32bitFMT"\t%f\t%f\n", i, j, log(heatraw[i][j]), heatsca[i][j]); > ^ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o meryl/compare-counts meryl/compare-counts.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:49:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "mer "u64bitHEX" not found : e=%d f=%d g=%d\n", m, ee, ef, eg); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:78:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Tried "u64bitFMT", didn't find "u64bitFMT" merStream mers in the existDB.\n", tried, lost); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:78:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Tried "u64bitFMT", didn't find "u64bitFMT" merStream mers in the existDB.\n", tried, lost); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:110:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Found "u64bitFMT" mers in the meryl database.\n", expected); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:130:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Expected to find "u64bitFMT" mers, but found "u64bitFMT" instead.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.C:130:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Expected to find "u64bitFMT" mers, but found "u64bitFMT" instead.\n", > ^ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/existDB /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-existDB.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio.h:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:14, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/bio++.H:15, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:6: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:8:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift1 = "u32bitFMT"\n", _shift1); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "shift2 = "u32bitFMT"\n", _shift2); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "M = "u64bitHEX"\n", m); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "H = "u64bitHEX"\n", h); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "C = "u64bitHEX"\n", c); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "R = "u64bitHEX"\n", r); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:54:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s @ "u64bitFMT"/"u64bitFMT": Found "u64bitFMT" table entries, and "u32bitFMT" matching positions (", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:54:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s @ "u64bitFMT"/"u64bitFMT": Found "u64bitFMT" table entries, and "u32bitFMT" matching positions (", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:54:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s @ "u64bitFMT"/"u64bitFMT": Found "u64bitFMT" table entries, and "u32bitFMT" matching positions (", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:54:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s @ "u64bitFMT"/"u64bitFMT": Found "u64bitFMT" table entries, and "u32bitFMT" matching positions (", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:68:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Found no matches for mer=%s at pos="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:101:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Got a F match for mer=%s at "u64bitFMT"/"u64bitFMT" (in mers), numMatches="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:101:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Got a F match for mer=%s at "u64bitFMT"/"u64bitFMT" (in mers), numMatches="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:101:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Got a F match for mer=%s at "u64bitFMT"/"u64bitFMT" (in mers), numMatches="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Got a R match for mer=%s at "u64bitFMT"/"u64bitFMT" (in mers), numMatches="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:110:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Got a R match for mer=%s at "u64bitFMT"/"u64bitFMT" (in mers), numMatches="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:110:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "Got a R match for mer=%s at "u64bitFMT"/"u64bitFMT" (in mers), numMatches="u64bitFMT"\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:255:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: merbegin="u64bitFMT" and merend="u64bitFMT" are incompatible.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:255:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: merbegin="u64bitFMT" and merend="u64bitFMT" are incompatible.\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:275:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Building table with merSize "u32bitFMT", merSkip "u32bitFMT"\n", mersize, merskip); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.C:275:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Building table with merSize "u32bitFMT", merSkip "u32bitFMT"\n", mersize, merskip); > ^ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/positionDB /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/driver-posDB.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/percentCovered.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/percentCovered.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/percentCovered.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/percentCovered.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/percentCovered.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/percentCovered.C:1: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/percentCovered /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/percentCovered.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/ -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.C >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:4:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:49:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitFMT "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:50:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u64bitHEX "0x%016"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:52:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s64bitFMT "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:59:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitFMT "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:60:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u32bitHEX "0x%08"PRIx32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:62:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define s32bitFMT "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util.h:69:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define u16bitFMT "%"PRIu16 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:37:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "HEAP["u32bitFMT"]="u64bitFMT"\n", i, _array->get(i)); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:38:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(f, "inside: "u64bitFMT" outside: "u64bitFMT"\n", stat_seekInside, stat_seekOutside); > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/util++.H:43:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.C:4: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/logMsg.H:65:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > "logMsg::add()-- HEY! I wrote "u32bitFMT" bytes beyond the end of the buffer!\n" > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.C:209:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "mask "u32bitFMT" "u32bitFMT"\n", i, blockEnd); > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.C:209:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "mask "u32bitFMT" "u32bitFMT"\n", i, blockEnd); > ^ >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/mask.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libkmer/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libmeryl/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqCache.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-seqStream.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/test-merStream.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libseq/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libbio/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -fPIC -D_REENTRANT -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/test.o -c /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/test.c >rm -f /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/libmt19937ar.a && ar ruvs /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/libmt19937ar.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/test.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/libmt19937ar.a >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/mt19937ar.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/mt19937ar/test.o >rm -f /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/libkaz.a && ar ruvs /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/libkaz.a /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/dict.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/except.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/hash.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/list.o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/sfx.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/libkaz.a >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/dict.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/except.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/hash.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/list.o >a - /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer/libutil/kazlib/sfx.o >make: Leaving directory '/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/kmer' >make -j1 -C src -j1 SITE_NAME=LOCAL >make: Entering directory '/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src' >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_global.o AS_global.C >In file included from AS_global.C:24:0: >AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >AS_global.C:228:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(N, "%s/"F_U64"_%s_"F_U64"_%s", > ^ >AS_global.C:228:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(N, "%s/"F_U64"_%s_"F_U64"_%s", > ^ >* Make Target is objs >############################## AS_RUN ############################## >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/fragmentDepth.o fragmentDepth.C >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/markUniqueUnique.o markUniqueUnique.C >In file included from fragmentDepth.C:32:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >fragmentDepth.C:97:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "histogramBig: "F_U32"\n", histogramBig); > ^ >fragmentDepth.C:195:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"F_U32"\t"F_U32"\t"F_U32"\t%f\t"F_U32"\n", AS_UID_toString(lastuid), i, E, mode, mean, median); > ^ >fragmentDepth.C:195:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"F_U32"\t"F_U32"\t"F_U32"\t%f\t"F_U32"\n", AS_UID_toString(lastuid), i, E, mode, mean, median); > ^ >fragmentDepth.C:195:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"F_U32"\t"F_U32"\t"F_U32"\t%f\t"F_U32"\n", AS_UID_toString(lastuid), i, E, mode, mean, median); > ^ >fragmentDepth.C:195:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stdout, "%s\t"F_U32"\t"F_U32"\t"F_U32"\t%f\t"F_U32"\n", AS_UID_toString(lastuid), i, E, mode, mean, median); > ^ >In file included from markUniqueUnique.C:13:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >In file included from markUniqueUnique.C:16:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL/AS_UTL_Var.h:128:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "VA %10"F_SIZE_TP" bytes; elements: %10"F_SIZE_TP" active; %10"F_SIZE_TP" allocated; %5" F_SIZE_TP" bytes; '%s'\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL/AS_UTL_Var.h:128:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "VA %10"F_SIZE_TP" bytes; elements: %10"F_SIZE_TP" active; %10"F_SIZE_TP" allocated; %5" F_SIZE_TP" bytes; '%s'\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL/AS_UTL_Var.h:128:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "VA %10"F_SIZE_TP" bytes; elements: %10"F_SIZE_TP" active; %10"F_SIZE_TP" allocated; %5" F_SIZE_TP" bytes; '%s'\n", > ^ >fragmentDepth.C: In function âvoid outputResult(AS_UID, intDep*, uint32, int, uint32*, uint32*, int)â: >fragmentDepth.C:221:96: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > _writeFastA(stdout, seq, id[idlen-1].hi, 0, ">%s\n", AS_UID_toString(lastuid)); > ^ >############################## AS_UTL ############################## >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_Hash.o AS_UTL_Hash.C >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_heap.o AS_UTL_heap.C >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_Var.o AS_UTL_Var.C >In file included from AS_UTL_Hash.h:27:0, > from AS_UTL_Hash.C:23: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_rand.o AS_UTL_rand.C >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >AS_UTL_Hash.C:21:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *rcsid = "$Id: AS_UTL_Hash.c,v 1.27 2011/09/06 01:11:56 mkotelbajcvi Exp $"; > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In file included from AS_UTL_heap.h:27:0, > from AS_UTL_heap.C:24: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >AS_UTL_heap.C:22:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *rcsid = "$Id: AS_UTL_heap.c,v 1.13 2011/09/06 01:11:56 mkotelbajcvi Exp $"; > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In file included from AS_UTL_Var.h:36:0, > from AS_UTL_Var.C:37: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >In file included from AS_UTL_Var.C:37:0: >AS_UTL_Var.h:128:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "VA %10"F_SIZE_TP" bytes; elements: %10"F_SIZE_TP" active; %10"F_SIZE_TP" allocated; %5" F_SIZE_TP" bytes; '%s'\n", > ^ >AS_UTL_Var.h:128:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "VA %10"F_SIZE_TP" bytes; elements: %10"F_SIZE_TP" active; %10"F_SIZE_TP" allocated; %5" F_SIZE_TP" bytes; '%s'\n", > ^ >AS_UTL_Var.h:128:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "VA %10"F_SIZE_TP" bytes; elements: %10"F_SIZE_TP" active; %10"F_SIZE_TP" allocated; %5" F_SIZE_TP" bytes; '%s'\n", > ^ >AS_UTL_Var.C:333:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ReadVA()-- Short read from va <%s>; expected "F_SIZE_T" elements, read "F_SIZE_T" elements.\n", > ^ >AS_UTL_Var.C:333:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > intf(stderr, "ReadVA()-- Short read from va <%s>; expected "F_SIZE_T" elements, read "F_SIZE_T" elements.\n", > ^ >AS_UTL_Var.C:22:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *rcsid = "$Id: AS_UTL_Var.c,v 1.34 2011/12/29 09:26:03 brianwalenz Exp $"; > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >In file included from AS_UTL_rand.h:36:0, > from AS_UTL_rand.C:24: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >AS_UTL_rand.C:21:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *rcsid = "$Id: AS_UTL_rand.c,v 1.6 2008/10/08 22:03:00 brianwalenz Exp $"; > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_interval.o AS_UTL_interval.C >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/UnionFind_AS.o UnionFind_AS.C >In file included from AS_UTL_interval.C:22:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >UnionFind_AS.C:21:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *rcsid = "$Id: UnionFind_AS.c,v 1.6 2008/10/08 22:03:00 brianwalenz Exp $"; > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >AS_UTL_interval.C:21:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *rcsid = "$Id: AS_UTL_interval.c,v 1.9 2009/07/30 10:42:56 brianwalenz Exp $"; > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_skiplist.o AS_UTL_skiplist.C >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_alloc.o AS_UTL_alloc.C >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_fileIO.o AS_UTL_fileIO.C >In file included from AS_UTL_skiplist.h:76:0, > from AS_UTL_skiplist.C:45: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >AS_UTL_skiplist.C:36:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *rcsid = "$Id: AS_UTL_skiplist.c,v 1.7 2008/10/08 22:03:00 brianwalenz Exp $"; > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_qsort_mt.o AS_UTL_qsort_mt.C >In file included from AS_UTL_alloc.C:43:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >AS_UTL_alloc.C:55:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Could not calloc memory ("F_SIZE_T" * "F_SIZE_T" bytes = "F_SIZE_T")\n", > ^ >AS_UTL_alloc.C:55:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Could not calloc memory ("F_SIZE_T" * "F_SIZE_T" bytes = "F_SIZE_T")\n", > ^ >AS_UTL_alloc.C:55:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Could not calloc memory ("F_SIZE_T" * "F_SIZE_T" bytes = "F_SIZE_T")\n", > ^ >AS_UTL_alloc.C:72:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Could not malloc memory ("F_SIZE_T" bytes)\n", len); > ^ >AS_UTL_alloc.C:88:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "Could not realloc memory ("F_SIZE_T" bytes)\n", len); > ^ >In file included from AS_UTL_fileIO.h:38:0, > from AS_UTL_fileIO.C:24: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >AS_UTL_fileIO.C:65:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "safeWrite()-- Wanted to write "F_SIZE_T" objects (size="F_SIZE_T"), wrote "F_SIZE_T".\n", > ^ >AS_UTL_fileIO.C:65:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "safeWrite()-- Wanted to write "F_SIZE_T" objects (size="F_SIZE_T"), wrote "F_SIZE_T".\n", > ^ >AS_UTL_fileIO.C:65:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > r, "safeWrite()-- Wanted to write "F_SIZE_T" objects (size="F_SIZE_T"), wrote "F_SIZE_T".\n", > ^ >AS_UTL_fileIO.C:81:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "safeWrite()-- EXPECTED "F_OFF_T", ended up at "F_OFF_T"\n", > ^ >AS_UTL_fileIO.C:81:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "safeWrite()-- EXPECTED "F_OFF_T", ended up at "F_OFF_T"\n", > ^ >AS_UTL_fileIO.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "safeRead()-- Wanted to read "F_SIZE_T" objects (size="F_SIZE_T"), read "F_SIZE_T".\n", > ^ >AS_UTL_fileIO.C:110:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "safeRead()-- Wanted to read "F_SIZE_T" objects (size="F_SIZE_T"), read "F_SIZE_T".\n", > ^ >AS_UTL_fileIO.C:110:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > err, "safeRead()-- Wanted to read "F_SIZE_T" objects (size="F_SIZE_T"), read "F_SIZE_T".\n", > ^ >AS_UTL_fileIO.C:254:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fscanf(F, " %*d "F_OFF_T" %*s %*s ", &size); > ^ >AS_UTL_qsort_mt.C:36:22: warning: ISO C++ forbids converting a string constant to âchar*â [-Wwrite-strings] > static char *rcsid = "$Id: AS_UTL_qsort_mt.c,v 1.5 2009/06/10 18:05:14 brianwalenz Exp $"; > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_fasta.o AS_UTL_fasta.C >AS_UTL_fileIO.C: In function âoff_t AS_UTL_sizeOfFile(const char*)â: >AS_UTL_fileIO.C:253:11: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(F, " %*s %*s %*s %*s "); > ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ >AS_UTL_fileIO.C:254:11: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(F, " %*d "F_OFF_T" %*s %*s ", &size); > ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_UID.o AS_UTL_UID.C >In file included from AS_UTL_fasta.h:32:0, > from AS_UTL_fasta.C:24: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_reverseComplement.o AS_UTL_reverseComplement.C >In file included from AS_UTL_UID.h:32:0, > from AS_UTL_UID.C:24: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >In file included from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG/AS_MSG_pmesg.h:36:0, > from /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER/AS_PER_gkpStore.h:36, > from AS_UTL_UID.C:25: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL/AS_UTL_Var.h:128:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "VA %10"F_SIZE_TP" bytes; elements: %10"F_SIZE_TP" active; %10"F_SIZE_TP" allocated; %5" F_SIZE_TP" bytes; '%s'\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL/AS_UTL_Var.h:128:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "VA %10"F_SIZE_TP" bytes; elements: %10"F_SIZE_TP" active; %10"F_SIZE_TP" allocated; %5" F_SIZE_TP" bytes; '%s'\n", > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL/AS_UTL_Var.h:128:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stream, "VA %10"F_SIZE_TP" bytes; elements: %10"F_SIZE_TP" active; %10"F_SIZE_TP" allocated; %5" F_SIZE_TP" bytes; '%s'\n", > ^ >AS_UTL_UID.C:70:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > sprintf(retbuffer, "CAx"F_U64, uid.UID); > ^ >AS_UTL_UID.C:122:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: UID '"F_STR"' larger than maximum allowed ("F_S32" letters). FAIL.\n", > ^ >AS_UTL_UID.C:122:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: UID '"F_STR"' larger than maximum allowed ("F_S32" letters). FAIL.\n", > ^ >AS_UTL_UID.C:128:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: UID '"F_STR"' contains "F_S32" commas. FAIL.", > ^ >AS_UTL_UID.C:128:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > fprintf(stderr, "ERROR: UID '"F_STR"' contains "F_S32" commas. FAIL.", > ^ >In file included from AS_UTL_reverseComplement.C:24:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/AS_UTL_intervalList.o AS_UTL_intervalList.C >In file included from AS_UTL_intervalList.H:25:0, > from AS_UTL_intervalList.C:24: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >############################## AS_UID ############################## >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/uidclient.o uidclient.C >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/uidserver.o uidserver.C >x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -c -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVM -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_BAT -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_PBR -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/Linux-amd64/obj/SYS_UIDclient_LOCAL.o SYS_UIDclient_LOCAL.C >In file included from SYS_UIDclient.h:31:0, > from uidclient.C:28: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >In file included from uidserver_common.h:1:0, > from uidserver.C:24: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >In file included from uidserver.C:24:0: >uidserver_common.h:17:10: fatal error: rpc/types.h: No such file or directory > #include <rpc/types.h> > ^~~~~~~~~~~~~ >compilation terminated. >make[1]: *** [/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/c_make.gen:383: uidserver.o] Error 1 >make[1]: *** Waiting for unfinished jobs.... >In file included from SYS_UIDclient_LOCAL.C:32:0: >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:108:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16 "%"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:110:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S16I "%*"PRId16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:111:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16 "%"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:113:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U16I "%*"PRIu16 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:114:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32 "%"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:116:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S32I "%*"PRId32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:117:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32 "%"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:119:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U32I "%*"PRIu32 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:120:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64 "%"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:122:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_S64I "%*"PRId64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:123:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64 "%"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:125:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_U64I "%*"PRIu64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:126:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64 "%"PRIx64 > ^ >/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src/AS_global.h:128:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] > #define F_X64I "%*"PRIx64 > ^ >SYS_UIDclient_LOCAL.C: In function âuint64 getGUIDBlock(int)â: >SYS_UIDclient_LOCAL.C:61:11: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(F, F_U64"\n", &guidStart); > ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ >make: *** [Makefile:38: objs] Error 1 >make: Leaving directory '/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0/src' > * ERROR: sci-biology/wgs-assembler-7.0-r1::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-biology/wgs-assembler-7.0-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/wgs-assembler-7.0-r1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-biology:wgs-assembler-7.0-r1:20171122-124457.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0' > * S: '/var/tmp/portage/sci-biology/wgs-assembler-7.0-r1/work/wgs-7.0'
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