sci-astronomy:casacore-2.3.0-r1:20170708-085153.log

sci-astronomy:casacore-2.3.0-r1:20170708-085153.log (text/plain), 9.54 KB, created by Toralf Förster on 2017-07-08 09:15:29 UTC

 * Package:    sci-astronomy/casacore-2.3.0-r1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 c++11 data elibc_glibc kernel_linux openmp python python_targets_python2_7 python_targets_python3_4 threads userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Using following Fortran compiler:
 *   F77: x86_64-pc-linux-gnu-gfortran
 *   FC:  x86_64-pc-linux-gnu-gfortran
>>> Unpacking source...
>>> Unpacking casacore-2.3.0.tar.gz to /var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work
>>> Source unpacked in /var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work
>>> Preparing source in /var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0 ...
 * Applying casacore-2.3.0-disable-class-and-collaboration-graph-generation.patch ...
 [ ok ]
 * Applying casacore-2.3.0-disable-known-test-failures.patch ...
 [ ok ]
 * Applying casacore-2.3.0-disable-tests-that-require-data-tables.patch ...
 [ ok ]
 * Applying casacore-2.3.0-do-not-install-test-and-demonstration-executables.patch ...
 [ ok ]
 * Applying casacore-2.3.0-fix-FTBFS-tStatisticsUtilities-tLatticeStatistics-and-tLC.patch ...
 [ ok ]
 * Applying casacore-2.3.0-fix-too-small-int-type-for-memory-on-32-bit-machines.patch ...
 [ ok ]
 * Applying casacore-2.3.0-loose-some-tests-tFFTServer-tests.patch ...
 [ ok ]
 * Applying casacore-2.3.0-make-the-check-for-NFS-a-bit-more-portable-BSD.patch ...
 [ ok ]
 * Applying casacore-2.3.0-use-the-correct-symbol-to-detect-Linux-OS.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0 ...
 * python2_7: running python_set_options
 * python3_4: running python_set_options
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0_build"
cmake -C /var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_SHARED=ON -DBUILD_PYTHON=OFF -DDATA_DIR=/usr/share/casa/data -DBUILD_TESTING=no -DCXX11=yes -DUSE_FFTW3=no -DUSE_HDF5=no -DUSE_OPENMP=yes -DUSE_THREADS=yes -DPYTHON2_EXECUTABLE=/usr/bin/python2.7 -DBUILD_PYTHON=ON -DPYTHON3_EXECUTABLE=/usr/bin/python3.4 -DBUILD_PYTHON3=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0
loading initial cache file /var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 6.3.0
-- The CXX compiler identification is GNU 6.3.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 6.3.0
-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran
-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90
-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- yes
-- Namespace casacore 'merged' into namespace casa.
-- Performing Test HAS_CXX11
-- Performing Test HAS_CXX11 - Success
-- Performing Test HAS_GXX_FORTRAN_RULES
-- Performing Test HAS_GXX_FORTRAN_RULES - Success
-- Performing Test HAS_GCC_FORTRAN_RULES
-- Performing Test HAS_GCC_FORTRAN_RULES - Success
-- Looking for pread
-- Looking for pread - found
-- Looking for pwrite
-- Looking for pwrite - found
-- Found Readline: /usr/lib/libreadline.so  
-- Could NOT find SOFA (missing:  SOFA_LIBRARY) 
-- Found FLEX: /usr/bin/flex  
-- Found BISON: /usr/bin/bison  
-- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "0.29.2") 
-- Checking for module 'blas'
--   Found blas, version 3.7.0
-- Found BLAS: /usr/lib/libblas.so  
-- Checking for module 'lapack'
--   Found lapack, version 3.7.0
-- Found LAPACK: /usr/lib/liblapack.so;/usr/lib/libblas.so  
-- Found CFITSIO: /usr/lib/libcfitsio.so (found suitable version "3.410", minimum required is "3.030") 
-- Found WCSLIB: /usr/lib/libwcs.so (found suitable version "5.16", minimum required is "4.7") 
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenMP.cmake:179 (if):
  if given arguments:

    "TRUE"

  An argument named "TRUE" appears in a conditional statement.  Policy
  CMP0012 is not set: if() recognizes numbers and boolean constants.  Run
  "cmake --help-policy CMP0012" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindOpenMP.cmake:224 (_OPENMP_GET_SPEC_DATE)
  CMakeLists.txt:417 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenMP.cmake:179 (if):
  if given arguments:

    "TRUE"

  An argument named "TRUE" appears in a conditional statement.  Policy
  CMP0012 is not set: if() recognizes numbers and boolean constants.  Run
  "cmake --help-policy CMP0012" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindOpenMP.cmake:266 (_OPENMP_GET_SPEC_DATE)
  CMakeLists.txt:417 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Try OpenMP Fortran flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenMP.cmake:179 (if):
  if given arguments:

    "TRUE"

  An argument named "TRUE" appears in a conditional statement.  Policy
  CMP0012 is not set: if() recognizes numbers and boolean constants.  Run
  "cmake --help-policy CMP0012" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindOpenMP.cmake:305 (_OPENMP_GET_SPEC_DATE)
  CMakeLists.txt:417 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found OpenMP: -fopenmp  
-- Found Pthreads: /usr/lib/libpthread.so  
CMake Warning (dev) at msfits/CMakeLists.txt:29 (add_subdirectory):
  The source directory

    /var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0/msfits/apps

  does not contain a CMakeLists.txt file.

  CMake does not support this case but it used to work accidentally and is
  being allowed for compatibility.

  Policy CMP0014 is not set: Input directories must have CMakeLists.txt.  Run
  "cmake --help-policy CMP0014" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Looking for python2 specific environment...
-- Found PythonInterp: /usr/bin/python2.7 (found suitable version "2.7.13", minimum required is "2") 
CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:137 (message):
  Could NOT find PythonLibs (missing: PYTHON_LIBRARIES PYTHON_INCLUDE_DIRS)
  (Required is at least version "2")
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:377 (_FPHSA_FAILURE_MESSAGE)
  /usr/share/cmake/Modules/FindPythonLibs.cmake:275 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  cmake/FindPython.cmake:49 (find_package)
  python/CMakeLists.txt:23 (find_package)


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0_build/CMakeFiles/CMakeOutput.log".
 * ERROR: sci-astronomy/casacore-2.3.0-r1::gentoo failed (configure phase):
 *   cmake failed
 * 
 * Call stack:
 *     ebuild.sh, line  115:  Called src_configure
 *   environment, line 4393:  Called cmake-utils_src_configure
 *   environment, line 1268:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 * 
 * If you need support, post the output of `emerge --info '=sci-astronomy/casacore-2.3.0-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-astronomy/casacore-2.3.0-r1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-astronomy:casacore-2.3.0-r1:20170708-085153.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0_build'
 * S: '/var/tmp/portage/sci-astronomy/casacore-2.3.0-r1/work/casacore-2.3.0'