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Gentoo's Bugzilla – Attachment 385922 Details for
Bug 524252
sci-biology/cufflinks-2.2.1 should not depend on <sci-biology/samtools-1.0
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cufflinks-2.2.1 ebuild for samtools-1.0
cufflinks-2.2.1.ebuild (text/plain), 1014 bytes, created by
Michael Schubert
on 2014-10-01 20:32:10 UTC
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Description:
cufflinks-2.2.1 ebuild for samtools-1.0
Filename:
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Creator:
Michael Schubert
Created:
2014-10-01 20:32:10 UTC
Size:
1014 bytes
patch
obsolete
># Copyright 1999-2014 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0-r1.ebuild,v 1.1 2014/02/05 08:16:11 pinkbyte Exp $ > >EAPI=5 > >AUTOTOOLS_AUTORECONF=yes > >inherit autotools-utils > >DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" >HOMEPAGE="http://cufflinks.cbcb.umd.edu/" >SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz" > >SLOT="0" >LICENSE="Artistic" >IUSE="debug" >KEYWORDS="~amd64 ~x86" > >DEPEND=" > >=sci-biology/samtools-0.1.18 > dev-cpp/eigen > dev-libs/boost:=" >RDEPEND="${DEPEND}" > >src_configure() { > local myeconfargs=( > --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/" > --with-bam="${EPREFIX}/usr/" > $(use_enable debug) > ) > CFLAGS="-I${EPREFIX}/usr/include/eigen3 ${CFLAGS}" \ > autotools-utils_src_configure >} > >src_compile() { > cd "${WORKDIR}/${P}_build" > find . -name Makefile -exec sed -i "/^BAM_LIB =/s|$| -lhts|" {} \; > emake >}
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bug 524252
: 385922