/var/tmp/portage/dev-perl/Bio-BigFile-1.06/temp/build.log

build.log (text/plain), 3.54 KB, created by Juergen Rose on 2012-01-01 08:58:26 UTC

[32;01m * [39;49;00mPackage:    dev-perl/Bio-BigFile-1.06
[32;01m * [39;49;00mRepository: science
[32;01m * [39;49;00mMaintainer: [e-mail] [e-mail]
[32;01m * [39;49;00mUSE:        amd64 elibc_glibc kernel_linux multilib userland_GNU
[32;01m * [39;49;00mFEATURES:   sandbox
>>> Unpacking source...
>>> Unpacking Bio-BigFile-1.06.tar.gz to /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work
>>> Source unpacked in /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work
>>> Preparing source in /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work/Bio-BigFile-1.06 ...
 [32;01m*[0m Applying Build.PL.patch ...
[A[171C [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work/Bio-BigFile-1.06 ...
 [32;01m*[0m Using Module::Build
 [32;01m*[0m perl Build.PL --installdirs=vendor --libdoc= --destdir=/var/tmp/portage/dev-perl/Bio-BigFile-1.06/image/ --create_packlist=0

This module requires the compiled jkweb.a library from Jim Kent's source tree.
If you haven't already done so, please download the source from
http://hgdownload.cse.ucsc.edu/admin/jksrc.zip, unpack it, and build the
contents of the "kent/src/lib" subdirectory as directed in the README. Then
enter the location of the "kent/src" subdirectory at the prompt below. To prevent
this message from appearing in the future, set the environment variable KENT_SRC 
to point to the "kent/src" subdirectory.

Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'Bio-BigFile' version '1.06'
>>> Source configured.
>>> Compiling source in /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work/Bio-BigFile-1.06 ...
Building Bio-BigFile
x86_64-pc-linux-gnu-gcc -I/usr/include/ucsc-genome-browser -I/usr/lib64/perl5/5.12.4/x86_64-linux-thread-multi/CORE -DXS_VERSION="1.06" -DVERSION="1.06" -fPIC -Wno-format -Wformat=0 -DMACHTYPE_ -c -march=amdfam10 -O2 -pipe -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -march=amdfam10 -O2 -pipe -o lib/Bio/DB/BigFile.o lib/Bio/DB/BigFile.c
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/BigFile/BigFile.bs')
x86_64-pc-linux-gnu-gcc -shared -march=amdfam10 -O2 -pipe -Wl,-O1 -Wl,--as-needed -o blib/arch/auto/Bio/DB/BigFile/BigFile.so lib/Bio/DB/BigFile.o /jkweb.a -lz -lssl
x86_64-pc-linux-gnu-gcc: /jkweb.a: No such file or directory
error building blib/arch/auto/Bio/DB/BigFile/BigFile.so from lib/Bio/DB/BigFile.o at /usr/lib64/perl5/vendor_perl/5.12.4/ExtUtils/CBuilder/Base.pm line 310.
 [31;01m*[0m ERROR: dev-perl/Bio-BigFile-1.06 failed (compile phase):
 [31;01m*[0m   Compilation failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   85:  Called src_compile
 [31;01m*[0m   environment, line 2580:  Called perl-module_src_compile
 [31;01m*[0m   environment, line 2248:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m           ./Build build || die "Compilation failed";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =dev-perl/Bio-BigFile-1.06',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =dev-perl/Bio-BigFile-1.06'.
 [31;01m*[0m This ebuild is from an overlay named 'science': '/var/lib/layman/science/'
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/dev-perl/Bio-BigFile-1.06/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/dev-perl/Bio-BigFile-1.06/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/dev-perl/Bio-BigFile-1.06/work/Bio-BigFile-1.06'