* Package: dev-perl/Bio-BigFile-1.06  * Repository: science  * Maintainer: mmokrejs@fold.natur.cuni.cz sci-biology@gentoo.org  * USE: amd64 elibc_glibc kernel_linux multilib userland_GNU  * FEATURES: sandbox >>> Unpacking source... >>> Unpacking Bio-BigFile-1.06.tar.gz to /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work >>> Source unpacked in /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work >>> Preparing source in /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work/Bio-BigFile-1.06 ... * Applying Build.PL.patch ...  [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work/Bio-BigFile-1.06 ... * Using Module::Build * perl Build.PL --installdirs=vendor --libdoc= --destdir=/var/tmp/portage/dev-perl/Bio-BigFile-1.06/image/ --create_packlist=0 This module requires the compiled jkweb.a library from Jim Kent's source tree. If you haven't already done so, please download the source from http://hgdownload.cse.ucsc.edu/admin/jksrc.zip, unpack it, and build the contents of the "kent/src/lib" subdirectory as directed in the README. Then enter the location of the "kent/src" subdirectory at the prompt below. To prevent this message from appearing in the future, set the environment variable KENT_SRC to point to the "kent/src" subdirectory. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-BigFile' version '1.06' >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-perl/Bio-BigFile-1.06/work/Bio-BigFile-1.06 ... Building Bio-BigFile x86_64-pc-linux-gnu-gcc -I/usr/include/ucsc-genome-browser -I/usr/lib64/perl5/5.12.4/x86_64-linux-thread-multi/CORE -DXS_VERSION="1.06" -DVERSION="1.06" -fPIC -Wno-format -Wformat=0 -DMACHTYPE_ -c -march=amdfam10 -O2 -pipe -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -march=amdfam10 -O2 -pipe -o lib/Bio/DB/BigFile.o lib/Bio/DB/BigFile.c ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/BigFile/BigFile.bs') x86_64-pc-linux-gnu-gcc -shared -march=amdfam10 -O2 -pipe -Wl,-O1 -Wl,--as-needed -o blib/arch/auto/Bio/DB/BigFile/BigFile.so lib/Bio/DB/BigFile.o /jkweb.a -lz -lssl x86_64-pc-linux-gnu-gcc: /jkweb.a: No such file or directory error building blib/arch/auto/Bio/DB/BigFile/BigFile.so from lib/Bio/DB/BigFile.o at /usr/lib64/perl5/vendor_perl/5.12.4/ExtUtils/CBuilder/Base.pm line 310. * ERROR: dev-perl/Bio-BigFile-1.06 failed (compile phase): * Compilation failed * * Call stack: * ebuild.sh, line 85: Called src_compile * environment, line 2580: Called perl-module_src_compile * environment, line 2248: Called die * The specific snippet of code: * ./Build build || die "Compilation failed"; * * If you need support, post the output of 'emerge --info =dev-perl/Bio-BigFile-1.06', * the complete build log and the output of 'emerge -pqv =dev-perl/Bio-BigFile-1.06'. * This ebuild is from an overlay named 'science': '/var/lib/layman/science/' * The complete build log is located at '/var/tmp/portage/dev-perl/Bio-BigFile-1.06/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-perl/Bio-BigFile-1.06/temp/environment'. * S: '/var/tmp/portage/dev-perl/Bio-BigFile-1.06/work/Bio-BigFile-1.06'