Build log

molscript-2.1.2-r1:20110808-020114.log (text/plain), 15.92 KB, created by Diego Elio Pettenò (RETIRED) on 2011-08-08 07:21:45 UTC

 * Package:    sci-chemistry/molscript-2.1.2-r1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        elibc_glibc kernel_linux test userland_GNU x86
 * FEATURES:   sandbox test userpriv usersandbox
>>> Unpacking source...
>>> Unpacking molscript-2.1.2.tar.gz to /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2 ...
 * Applying fix-makefile-shared.patch ...
 [ ok ]
 * Applying 2.1.2-ldflags.patch ...
 [ ok ]
 * Applying 2.1.2-prll.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2 ...
make -j14 CC=i686-pc-linux-gnu-gcc 'COPT=-O2 -pipe' 
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o molscript.tab.o molscript.tab.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o global.o global.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o lex.o lex.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o col.o col.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o select.o select.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o state.o state.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o graphics.o graphics.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o segment.o segment.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o coord.o coord.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o xform.o xform.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o postscript.o postscript.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o raster3d.o raster3d.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o vrml.o vrml.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o ./regex.o other/regex.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o opengl.o opengl.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o image.o image.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o eps_img.o eps_img.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o sgi_img.o sgi_img.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o jpeg_img.o jpeg_img.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o png_img.o png_img.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o gif_img.o gif_img.c
make -C clib clib.a CFLAGS="-I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT" OPENGLCLIBOBJ="ogl_utils.o ogl_body.o ogl_bitmap_character.o"
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2/clib'
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o args.o args.c
i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o molauto.o molauto.c
png_img.c:34:32: error: ‘Z_DEFAULT_COMPRESSION’ undeclared here (not in a function)
png_img.c: In function ‘pngi_first_plot’:
png_img.c:72:7: error: dereferencing pointer to incomplete type
png_img.c:77:3: warning: passing argument 7 of ‘png_set_IHDR’ makes integer from pointer without a cast [enabled by default]
/usr/include/png.h:2135:1: note: expected ‘int’ but argument is of type ‘void *’
png_img.c:77:3: warning: passing argument 8 of ‘png_set_IHDR’ makes integer from pointer without a cast [enabled by default]
/usr/include/png.h:2135:1: note: expected ‘int’ but argument is of type ‘void *’
png_img.c:77:3: warning: passing argument 9 of ‘png_set_IHDR’ makes integer from pointer without a cast [enabled by default]
/usr/include/png.h:2135:1: note: expected ‘int’ but argument is of type ‘void *’
png_img.c: In function ‘pngi_set_compression’:
png_img.c:138:25: error: ‘Z_BEST_SPEED’ undeclared (first use in this function)
png_img.c:138:25: note: each undeclared identifier is reported only once for each function it appears in
png_img.c:140:25: error: ‘Z_BEST_COMPRESSION’ undeclared (first use in this function)
png_img.c:142:25: error: ‘Z_NO_COMPRESSION’ undeclared (first use in this function)
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o str_utils.o str_utils.c
make: *** [png_img.o] Error 1
make: *** Waiting for unfinished jobs....
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o dynstring.o dynstring.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o err.o err.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o indent.o indent.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o vector3.o vector3.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o matrix3.o matrix3.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o quaternion.o quaternion.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o body3d.o body3d.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o extent3d.o extent3d.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o io_utils.o io_utils.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o colour.o colour.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o key_value.o key_value.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o named_data.o named_data.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o double_hash.o double_hash.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o hermite_curve.o hermite_curve.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o element_lookup.o element_lookup.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o aa_lookup.o aa_lookup.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o mol3d.o mol3d.c
aa_lookup.c:56:4: warning: initialization makes integer from pointer without a cast [enabled by default]
aa_lookup.c:56:4: warning: (near initialization for ‘aa_nodes[0].property’) [enabled by default]
aa_lookup.c:74:4: warning: initialization makes integer from pointer without a cast [enabled by default]
aa_lookup.c:74:4: warning: (near initialization for ‘aa_nodes[9].property’) [enabled by default]
aa_lookup.c:76:4: warning: initialization makes integer from pointer without a cast [enabled by default]
aa_lookup.c:76:4: warning: (near initialization for ‘aa_nodes[10].property’) [enabled by default]
aa_lookup.c:94:4: warning: initialization makes integer from pointer without a cast [enabled by default]
aa_lookup.c:94:4: warning: (near initialization for ‘aa_nodes[19].property’) [enabled by default]
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o mol3d_init.o mol3d_init.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o mol3d_io.o mol3d_io.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o mol3d_utils.o mol3d_utils.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o mol3d_chain.o mol3d_chain.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o mol3d_secstruc.o mol3d_secstruc.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o sgi_image.o sgi_image.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o vrml.o vrml.c
sgi_image.c: In function ‘sgiimg_write_next_char_row’:
sgi_image.c:346:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:351:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:359:9: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:360:9: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:366:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c: In function ‘sgiimg_file_close’:
sgi_image.c:299:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:300:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c: In function ‘sgiimg_file_init’:
sgi_image.c:247:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:248:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:249:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:250:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:251:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:252:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:253:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:254:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:255:43: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:256:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:257:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:258:45: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:261:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
sgi_image.c:262:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result]
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o ogl_utils.o ogl_utils.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o ogl_body.o ogl_body.c
i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT   -c -o ogl_bitmap_character.o ogl_bitmap_character.c
ar -cru clib.a args.o str_utils.o dynstring.o err.o indent.o vector3.o matrix3.o quaternion.o body3d.o extent3d.o io_utils.o colour.o key_value.o named_data.o double_hash.o hermite_curve.o element_lookup.o aa_lookup.o mol3d.o mol3d_init.o mol3d_io.o mol3d_utils.o mol3d_chain.o mol3d_secstruc.o sgi_image.o vrml.o ogl_utils.o ogl_body.o ogl_bitmap_character.o
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2/clib'
emake failed
 * ERROR: sci-chemistry/molscript-2.1.2-r1 failed (compile phase):
 *   emake failed
 * 
 * Call stack:
 *     ebuild.sh, line  56:  Called src_compile
 *   environment, line 2398:  Called die
 * The specific snippet of code:
 *       emake CC="$(tc-getCC)" COPT="${CFLAGS}" || die "emake failed"
 * 
 * If you need support, post the output of 'emerge --info =sci-chemistry/molscript-2.1.2-r1',
 * the complete build log and the output of 'emerge -pqv =sci-chemistry/molscript-2.1.2-r1'.
 * The complete build log is located at '/var/log/portage/build/sci-chemistry/molscript-2.1.2-r1:20110808-020114.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/temp/environment'.
 * S: '/var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2'