* Package: sci-chemistry/molscript-2.1.2-r1 * Repository: gentoo * Maintainer: sci-chemistry@gentoo.org * USE: elibc_glibc kernel_linux test userland_GNU x86 * FEATURES: sandbox test userpriv usersandbox >>> Unpacking source... >>> Unpacking molscript-2.1.2.tar.gz to /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work >>> Preparing source in /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2 ... * Applying fix-makefile-shared.patch ... [ ok ] * Applying 2.1.2-ldflags.patch ... [ ok ] * Applying 2.1.2-prll.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2 ... make -j14 CC=i686-pc-linux-gnu-gcc 'COPT=-O2 -pipe' i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o molscript.tab.o molscript.tab.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o global.o global.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o lex.o lex.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o col.o col.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o select.o select.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o state.o state.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o graphics.o graphics.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o segment.o segment.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o coord.o coord.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o xform.o xform.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o postscript.o postscript.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o raster3d.o raster3d.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o vrml.o vrml.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o ./regex.o other/regex.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o opengl.o opengl.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o image.o image.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o eps_img.o eps_img.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o sgi_img.o sgi_img.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o jpeg_img.o jpeg_img.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o png_img.o png_img.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o gif_img.o gif_img.c make -C clib clib.a CFLAGS="-I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT" OPENGLCLIBOBJ="ogl_utils.o ogl_body.o ogl_bitmap_character.o" make[1]: Entering directory `/var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2/clib' i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o args.o args.c i686-pc-linux-gnu-gcc -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o molauto.o molauto.c png_img.c:34:32: error: ‘Z_DEFAULT_COMPRESSION’ undeclared here (not in a function) png_img.c: In function ‘pngi_first_plot’: png_img.c:72:7: error: dereferencing pointer to incomplete type png_img.c:77:3: warning: passing argument 7 of ‘png_set_IHDR’ makes integer from pointer without a cast [enabled by default] /usr/include/png.h:2135:1: note: expected ‘int’ but argument is of type ‘void *’ png_img.c:77:3: warning: passing argument 8 of ‘png_set_IHDR’ makes integer from pointer without a cast [enabled by default] /usr/include/png.h:2135:1: note: expected ‘int’ but argument is of type ‘void *’ png_img.c:77:3: warning: passing argument 9 of ‘png_set_IHDR’ makes integer from pointer without a cast [enabled by default] /usr/include/png.h:2135:1: note: expected ‘int’ but argument is of type ‘void *’ png_img.c: In function ‘pngi_set_compression’: png_img.c:138:25: error: ‘Z_BEST_SPEED’ undeclared (first use in this function) png_img.c:138:25: note: each undeclared identifier is reported only once for each function it appears in png_img.c:140:25: error: ‘Z_BEST_COMPRESSION’ undeclared (first use in this function) png_img.c:142:25: error: ‘Z_NO_COMPRESSION’ undeclared (first use in this function) i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o str_utils.o str_utils.c make: *** [png_img.o] Error 1 make: *** Waiting for unfinished jobs.... i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o dynstring.o dynstring.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o err.o err.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o indent.o indent.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o vector3.o vector3.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o matrix3.o matrix3.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o quaternion.o quaternion.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o body3d.o body3d.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o extent3d.o extent3d.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o io_utils.o io_utils.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o colour.o colour.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o key_value.o key_value.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o named_data.o named_data.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o double_hash.o double_hash.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o hermite_curve.o hermite_curve.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o element_lookup.o element_lookup.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o aa_lookup.o aa_lookup.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o mol3d.o mol3d.c aa_lookup.c:56:4: warning: initialization makes integer from pointer without a cast [enabled by default] aa_lookup.c:56:4: warning: (near initialization for ‘aa_nodes[0].property’) [enabled by default] aa_lookup.c:74:4: warning: initialization makes integer from pointer without a cast [enabled by default] aa_lookup.c:74:4: warning: (near initialization for ‘aa_nodes[9].property’) [enabled by default] aa_lookup.c:76:4: warning: initialization makes integer from pointer without a cast [enabled by default] aa_lookup.c:76:4: warning: (near initialization for ‘aa_nodes[10].property’) [enabled by default] aa_lookup.c:94:4: warning: initialization makes integer from pointer without a cast [enabled by default] aa_lookup.c:94:4: warning: (near initialization for ‘aa_nodes[19].property’) [enabled by default] i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o mol3d_init.o mol3d_init.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o mol3d_io.o mol3d_io.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o mol3d_utils.o mol3d_utils.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o mol3d_chain.o mol3d_chain.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o mol3d_secstruc.o mol3d_secstruc.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o sgi_image.o sgi_image.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o vrml.o vrml.c sgi_image.c: In function ‘sgiimg_write_next_char_row’: sgi_image.c:346:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:351:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:359:9: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:360:9: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:366:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c: In function ‘sgiimg_file_close’: sgi_image.c:299:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:300:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c: In function ‘sgiimg_file_init’: sgi_image.c:247:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:248:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:249:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:250:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:251:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:252:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:253:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:254:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:255:43: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:256:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:257:10: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:258:45: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:261:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] sgi_image.c:262:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result [-Wunused-result] i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o ogl_utils.o ogl_utils.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o ogl_body.o ogl_body.c i686-pc-linux-gnu-gcc -I. -O2 -pipe -ansi -Iclib -DOPENGL_SUPPORT -I/usr/include/GL -DIMAGE_SUPPORT -DJPEG_SUPPORT -DPNG_SUPPORT -DGIF_SUPPORT -c -o ogl_bitmap_character.o ogl_bitmap_character.c ar -cru clib.a args.o str_utils.o dynstring.o err.o indent.o vector3.o matrix3.o quaternion.o body3d.o extent3d.o io_utils.o colour.o key_value.o named_data.o double_hash.o hermite_curve.o element_lookup.o aa_lookup.o mol3d.o mol3d_init.o mol3d_io.o mol3d_utils.o mol3d_chain.o mol3d_secstruc.o sgi_image.o vrml.o ogl_utils.o ogl_body.o ogl_bitmap_character.o make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2/clib' emake failed * ERROR: sci-chemistry/molscript-2.1.2-r1 failed (compile phase): * emake failed * * Call stack: * ebuild.sh, line 56: Called src_compile * environment, line 2398: Called die * The specific snippet of code: * emake CC="$(tc-getCC)" COPT="${CFLAGS}" || die "emake failed" * * If you need support, post the output of 'emerge --info =sci-chemistry/molscript-2.1.2-r1', * the complete build log and the output of 'emerge -pqv =sci-chemistry/molscript-2.1.2-r1'. * The complete build log is located at '/var/log/portage/build/sci-chemistry/molscript-2.1.2-r1:20110808-020114.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/temp/environment'. * S: '/var/tmp/portage/sci-chemistry/molscript-2.1.2-r1/work/molscript-2.1.2'