Build log

ariadne-1.3-r1:20110315-023435.log (text/plain), 7.84 KB, created by Diego Elio Pettenò (RETIRED) on 2011-03-15 16:32:33 UTC

 * Package:    sci-biology/ariadne-1.3-r1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        elibc_glibc kernel_linux test userland_GNU x86
 * FEATURES:   sandbox test userpriv usersandbox
>>> Unpacking source...
>>> Unpacking ariadne-1.3.tar.Z to /var/tmp/portage/sci-biology/ariadne-1.3-r1/work
 * Applying ariadne-1.3-gcc4.patch ...
 [ ok ]
>>> Source unpacked in /var/tmp/portage/sci-biology/ariadne-1.3-r1/work
>>> Compiling source in /var/tmp/portage/sci-biology/ariadne-1.3-r1/work/SRC-1.3 ...
make -j14 
mkdir -p ./Linux
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/cl.o cl.c; 
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/searchpath.o searchpath.c; 
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/readline.o readline.c; 
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/seq_util.o seq_util.c; 
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/gaplib.o gaplib.c; 
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/cmp.o cmp.c; 
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/profile_util.o profile_util.c; 
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/profile_stat.o profile_stat.c; 
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/prospero_utils.o prospero_utils.c; 
i686-pc-linux-gnu-gcc -c -O2 -pipe -g -I./Include/ -o Linux/topalign.o topalign.c; 
profile_util.c: In function ‘ReadBinaryProfile’:
profile_util.c:328:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:339:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:340:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:341:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:342:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:343:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:344:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:346:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:348:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:353:12: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c: In function ‘WriteBinaryProfile’:
profile_util.c:278:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:279:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:280:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:281:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:282:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:283:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:284:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:285:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:286:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:287:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:294:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c: In function ‘ReadPreProcessedProfile’:
profile_util.c:232:8: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:237:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c:250:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
profile_util.c: In function ‘WritePreProcessedProfile’:
profile_util.c:199:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:200:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:201:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:202:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:203:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:204:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:205:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c:218:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
profile_util.c: In function ‘ReadProfile’:
profile_util.c:66:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
profile_util.c:77:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
profile_util.c:88:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
seq_util.c: In function ‘compile_nbrf_index’:
seq_util.c:881:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
seq_util.c:882:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
seq_util.c: In function ‘compile_fasta_index’:
seq_util.c:844:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
seq_util.c: In function ‘compile_embl_index’:
seq_util.c:795:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
ar rscuv ./Linux/libseq.a ./Linux/cl.o ./Linux/searchpath.o ./Linux/readline.o ./Linux/seq_util.o ./Linux/gaplib.o ./Linux/cmp.o ./Linux/profile_util.o ./Linux/profile_stat.o ./Linux/prospero_utils.o ./Linux/topalign.o; 
a - ./Linux/cl.o
a - ./Linux/searchpath.o
a - ./Linux/readline.o
a - ./Linux/seq_util.o
a - ./Linux/gaplib.o
a - ./Linux/cmp.o
a - ./Linux/profile_util.o
a - ./Linux/profile_stat.o
a - ./Linux/prospero_utils.o
a - ./Linux/topalign.o
i686-pc-linux-gnu-gcc -O2 -pipe -g  -DLinux  -I./Include/ -L./Linux -o ./Linux/ariadne ariadne.c  -lseq  -lm -lpthread
i686-pc-linux-gnu-gcc -O2 -pipe -g  -DLinux  -I./Include/ -L./Linux -o ./Linux/prospero prospero.c  -lseq  -lm -lpthread
prospero.c: In function ‘main’:
prospero.c:63:3: warning: incompatible implicit declaration of built-in function ‘strcpy’
>>> Source compiled.
>>> Test phase [none]: sci-biology/ariadne-1.3-r1

>>> Install ariadne-1.3-r1 into /var/tmp/portage/sci-biology/ariadne-1.3-r1/image/ category sci-biology
>>> Completed installing ariadne-1.3-r1 into /var/tmp/portage/sci-biology/ariadne-1.3-r1/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/ariadne
   usr/bin/prospero
   usr/lib/libseq.a

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/ariadne
 * /usr/bin/prospero


 * QA Notice: Package has poor programming practices which may compile
 *            fine but exhibit random runtime failures.
 * prospero.c:63:3: warning: incompatible implicit declaration of built-in function ‘strcpy’

 * Please do not file a Gentoo bug and instead report the above QA
 * issues directly to the upstream developers of this software.
 * Homepage: http://www.well.ox.ac.uk/ariadne/